Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo
sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo ... 740 0.0
gi|109698609 BTG3 associated nuclear protein isoform b [Homo sap... 346 2e-95
gi|17986266 BTG3 associated nuclear protein isoform a [Homo sapi... 346 2e-95
gi|71979663 growth factor receptor-bound protein 14 [Homo sapiens] 40 0.003
gi|57864582 hornerin [Homo sapiens] 37 0.036
gi|239754597 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo ... 35 0.14
gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo ... 35 0.14
gi|239508884 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 35 0.14
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 34 0.23
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 33 0.52
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 33 0.52
gi|169206319 PREDICTED: hypothetical protein [Homo sapiens] 33 0.52
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 33 0.52
gi|169206579 PREDICTED: hypothetical protein [Homo sapiens] 33 0.52
gi|239744865 PREDICTED: hypothetical protein [Homo sapiens] 33 0.52
gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens] 32 0.89
gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens] 32 0.89
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 31 1.5
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 31 1.5
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 1.5
gi|101943240 general transcription factor IIIC, polypeptide 1, a... 31 1.5
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 31 1.5
gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 2.0
gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo ... 30 2.6
gi|239748853 PREDICTED: hypothetical protein XP_002346819 [Homo ... 30 2.6
gi|239742882 PREDICTED: hypothetical protein XP_002342638 [Homo ... 30 2.6
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 30 2.6
>gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo
sapiens]
Length = 364
Score = 740 bits (1910), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MTDVTKSQPHCELNSFVLTGHSPVLWMMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDE 60
MTDVTKSQPHCELNSFVLTGHSPVLWMMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDE
Sbjct: 1 MTDVTKSQPHCELNSFVLTGHSPVLWMMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDE 60
Query: 61 DEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDSIEAKLQALEATCKSLEEKLDLVTN 120
DEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDSIEAKLQALEATCKSLEEKLDLVTN
Sbjct: 61 DEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDSIEAKLQALEATCKSLEEKLDLVTN 120
Query: 121 KQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNNDRQNAIVAKMEDPLSNRAPDSL 180
KQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNNDRQNAIVAKMEDPLSNRAPDSL
Sbjct: 121 KQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNNDRQNAIVAKMEDPLSNRAPDSL 180
Query: 181 ENVISNAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLIT 240
ENVISNAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLIT
Sbjct: 181 ENVISNAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLIT 240
Query: 241 LNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPS 300
LNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPS
Sbjct: 241 LNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPS 300
Query: 301 AASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAA 360
AASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAA
Sbjct: 301 AASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAA 360
Query: 361 GASE 364
GASE
Sbjct: 361 GASE 364
>gi|109698609 BTG3 associated nuclear protein isoform b [Homo
sapiens]
Length = 491
Score = 346 bits (887), Expect = 2e-95
Identities = 206/350 (58%), Positives = 223/350 (63%), Gaps = 64/350 (18%)
Query: 27 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 86
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI
Sbjct: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
Query: 87 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 146
NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
Sbjct: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
Query: 147 CVVPQTTVILNNDRQNAIVAKM--------EDPLS-NRAPDSLENVISNAVPGRRQNTIV 197
C VP RQN IV K+ ED S + A DS+ + N +
Sbjct: 121 CAVP-------GRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTL 173
Query: 198 VKVPGQEDSHHED--GESGS---------------------------------------- 215
+ + +ED + G+ +
Sbjct: 174 ITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREV 233
Query: 216 EASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRR 275
+A ++S G+ G + + L HLFYKFGITESDWYRIKQSIDSKCRTAWRR
Sbjct: 234 QAVSNLSGQGKHGKKQLDP---LTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRR 290
Query: 276 KQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGA 325
KQRGQSLAVKSFSRRTPNSSSYCPS P PP Q Q P A
Sbjct: 291 KQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTP---PPASELPQPQPQPQA 337
>gi|17986266 BTG3 associated nuclear protein isoform a [Homo
sapiens]
Length = 469
Score = 346 bits (887), Expect = 2e-95
Identities = 206/350 (58%), Positives = 223/350 (63%), Gaps = 64/350 (18%)
Query: 27 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 86
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI
Sbjct: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
Query: 87 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 146
NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
Sbjct: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
Query: 147 CVVPQTTVILNNDRQNAIVAKM--------EDPLS-NRAPDSLENVISNAVPGRRQNTIV 197
C VP RQN IV K+ ED S + A DS+ + N +
Sbjct: 121 CAVP-------GRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTL 173
Query: 198 VKVPGQEDSHHED--GESGS---------------------------------------- 215
+ + +ED + G+ +
Sbjct: 174 ITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREV 233
Query: 216 EASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRR 275
+A ++S G+ G + + L HLFYKFGITESDWYRIKQSIDSKCRTAWRR
Sbjct: 234 QAVSNLSGQGKHGKKQLDP---LTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRR 290
Query: 276 KQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGA 325
KQRGQSLAVKSFSRRTPNSSSYCPS P PP Q Q P A
Sbjct: 291 KQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTP---PPASELPQPQPQPQA 337
>gi|71979663 growth factor receptor-bound protein 14 [Homo sapiens]
Length = 540
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 277 QRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWP---GAAGCTADRR 333
Q GQS A ++ +R +P ++ C +A RG H L P P P G GC ADRR
Sbjct: 6 QDGQSAASRAAARDSPLAAQVCGAAQGRGDAHDLAPAPWLHARALLPLPDGTRGCAADRR 65
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 36.6 bits (83), Expect = 0.036
Identities = 41/160 (25%), Positives = 57/160 (35%), Gaps = 11/160 (6%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRI 261
GQ S+ G SGS S S G QS G + S G+ + G S Y
Sbjct: 901 GQSPSYGRHG-SGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSY-- 957
Query: 262 KQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQ 321
+ S+ + R +Q G S S + + S G P P R
Sbjct: 958 -EQHGSRSGQSSRSEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSR----- 1011
Query: 322 WPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAAG 361
G G + + GP SG GW ++ G GS ++G
Sbjct: 1012 --GRHGSGSGQSSSYGPYRSGSGWSSSRGPYESGSGHSSG 1049
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 12/161 (7%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIG-SNVTLITLNSEGHLFYKFGITESDWYR 260
G S+ + G SGS S S G QS G + + S G+ + G S Y
Sbjct: 1840 GHSSSYGQHG-SGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSY- 1897
Query: 261 IKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQ 320
+ S+ + R +Q G S S + + S G P P R
Sbjct: 1898 --EQHGSRSGQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSR---- 1951
Query: 321 QWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAAG 361
G G + + GP GSG GW ++ G GS ++G
Sbjct: 1952 ---GRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSSG 1989
Score = 31.2 bits (69), Expect = 1.5
Identities = 39/161 (24%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIG-SNVTLITLNSEGHLFYKFGITESDWYR 260
G S+ + G SGS S S G QS G + + S G+ + G S Y
Sbjct: 2310 GHSSSYGQHG-SGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSY- 2367
Query: 261 IKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQ 320
+ S+ + R ++ G S S + + S G P P R
Sbjct: 2368 --EQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSR---- 2421
Query: 321 QWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAAG 361
G G + + P GSG GW ++ G GS ++G
Sbjct: 2422 ---GRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSG 2459
Score = 29.6 bits (65), Expect = 4.4
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 12/161 (7%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIG-SNVTLITLNSEGHLFYKFGITESDWYR 260
G S+ + G SGS S S G QS G + + S G + G S Y
Sbjct: 1370 GHSSSYGQHG-SGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGSGHSSSY- 1427
Query: 261 IKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQ 320
+ S+ + R ++ G S S + + S G P P R
Sbjct: 1428 --EQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSR---- 1481
Query: 321 QWPGAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAAG 361
G G + + P GSG GW ++ G GS ++G
Sbjct: 1482 ---GRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHSSG 1519
Score = 29.3 bits (64), Expect = 5.8
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 24/166 (14%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRI 261
G SH + G SGS S SS G S+S S+V + GH S + +
Sbjct: 1253 GHSSSHGQHG-SGSGRS---SSRGPYESRSGHSSVFGQHESGSGH--------SSAYSQH 1300
Query: 262 KQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSY----CPSAASRGHPHPLPPGPIRL 317
C GQS T SSSY S+ S G+ G
Sbjct: 1301 GSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGY------GRHGA 1354
Query: 318 QSQQWP--GAAGCTADRRGLLGPRGSGRGWVATPGQRHPGSVRAAG 361
S Q P G G + G GSG GW ++ G+ GS +++G
Sbjct: 1355 GSGQSPSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSG 1400
>gi|239754597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 322 WPGAAGCTADRRGLLGPRGSGRGWVATPG---QRHPGSVRAAGAS 363
W C GLL PRG+ RGW G + HP +R GAS
Sbjct: 10 WGQRGQCRGLGSGLLDPRGAERGWCLVSGFTPKPHPEGLRGGGAS 54
>gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo
sapiens]
Length = 170
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 322 WPGAAGCTADRRGLLGPRGSGRGWVATPG---QRHPGSVRAAGAS 363
W C GLL PRG+ RGW G + HP +R GAS
Sbjct: 10 WGQRGQCRGLGSGLLDPRGAERGWCLVSGFTPKPHPEGLRGGGAS 54
>gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo
sapiens]
Length = 170
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 322 WPGAAGCTADRRGLLGPRGSGRGWVATPG---QRHPGSVRAAGAS 363
W C GLL PRG+ RGW G + HP +R GAS
Sbjct: 10 WGQRGQCRGLGSGLLDPRGAERGWCLVSGFTPKPHPEGLRGGGAS 54
>gi|239508884 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 322 WPGAAGCTADRRGLLGPRGSGRGWVATPG---QRHPGSVRAAGAS 363
W C GLL PRG+ RGW G + HP +R GAS
Sbjct: 10 WGQRGQCRGLGSGLLDPRGAERGWCLVSGFTPKPHPEGLRGGGAS 54
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 34.7 bits (78), Expect = 0.14
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 299 PSAASRGHPH---PLPPGPIRLQSQQWPGAA 326
P A+S GHP PLPPGP+ +QS + P AA
Sbjct: 445 PPASSLGHPPAKPPLPPGPVDMQSFRRPSAA 475
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 33.9 bits (76), Expect = 0.23
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 19/143 (13%)
Query: 169 EDPLSNRAPDSLENVISNAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSV------- 221
E P N++P S+ V Q+T V VPG +D G+ GS+ + SV
Sbjct: 518 EAPSENQSPSKGPEEASSEV----QDTNEVHVPGDQDEPQTLGKKGSKNNISVYMTLNQK 573
Query: 222 -SSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQ 280
S A SI S L + NSE F + S S ++ K+
Sbjct: 574 KSDSSSASVCSIDSTDDLKSSNSECSSSESFDFPPGSMH--APSTSSTSSSSKEEKKLSN 631
Query: 281 SLAVKSFSRR-----TPNSSSYC 298
SL +K FS+ TP+ + C
Sbjct: 632 SLKMKVFSKNVSKCVTPDGRTIC 654
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 32.7 bits (73), Expect = 0.52
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIGS--NVTLITLNSEGHLFYKFGITESDWY 259
G+E ++ S AS VS G+ G IG+ N +L S+G W
Sbjct: 750 GEEVDQTKNSNWESSASKPVSGWGEGGQNEIGTWGNGGNASLASKG-----------GWE 798
Query: 260 RIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCP---SAASRGHPHPLPPGPIR 316
K+S AW R + K ++ P P ++ S G P P PPG +R
Sbjct: 799 DCKRS------PAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSWGGPPPPPPGNVR 852
Query: 317 LQSQQW 322
+ W
Sbjct: 853 PSNSSW 858
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 32.7 bits (73), Expect = 0.52
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 202 GQEDSHHEDGESGSEASDSVSSCGQAGSQSIGS--NVTLITLNSEGHLFYKFGITESDWY 259
G+E ++ S AS VS G+ G IG+ N +L S+G W
Sbjct: 750 GEEVDQTKNSNWESSASKPVSGWGEGGQNEIGTWGNGGNASLASKG-----------GWE 798
Query: 260 RIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCP---SAASRGHPHPLPPGPIR 316
K+S AW R + K ++ P P ++ S G P P PPG +R
Sbjct: 799 DCKRS------PAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSWGGPPPPPPGNVR 852
Query: 317 LQSQQW 322
+ W
Sbjct: 853 PSNSSW 858
>gi|169206319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 290 RTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATP 349
R+ S+ +S H PL PGP+R Q Q C DR PR + R W P
Sbjct: 16 RSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDR----NPRPARRTWTERP 71
Query: 350 GQRHPGSVRAA 360
PG+ R A
Sbjct: 72 CS-EPGAGRRA 81
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.7 bits (73), Expect = 0.52
Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 299 PSAASRGHPHPLPPGPIRLQSQQWPGAAG--CTADRRGLLGP-----RGSG-RGWVATPG 350
P+ A RGH P SQ+ PGA G C R GP R +G R A P
Sbjct: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
Query: 351 QRHPGSVRAA 360
R PG RAA
Sbjct: 105 CRAPGRGRAA 114
>gi|169206579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 290 RTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATP 349
R+ S+ +S H PL PGP+R Q Q C DR PR + R W P
Sbjct: 16 RSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDR----NPRPARRTWTERP 71
Query: 350 GQRHPGSVRAA 360
PG+ R A
Sbjct: 72 CS-EPGAGRRA 81
>gi|239744865 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 290 RTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATP 349
R+ S+ +S H PL PGP+R Q Q C DR PR + R W P
Sbjct: 16 RSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDR----NPRPARRTWTERP 71
Query: 350 GQRHPGSVRAA 360
PG+ R A
Sbjct: 72 CS-EPGAGRRA 81
>gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens]
Length = 1531
Score = 32.0 bits (71), Expect = 0.89
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 199 KVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDW 258
KVP +E++ D E +E SDSV+ G + + + W
Sbjct: 1096 KVPDEEENEESDNEKETEKSDSVTDSGPT---------------------FNYLLDMPLW 1134
Query: 259 YRIKQSIDSKCRTAWRRKQRGQSLAVKS 286
Y K+ D CR ++Q +L KS
Sbjct: 1135 YLTKEKKDELCRLRNEKEQELDTLKRKS 1162
>gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 32.0 bits (71), Expect = 0.89
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 51 VLENHVVTDEDEPALKRQRLEI--NCQDPSIKSFLYSINQTICLR--LDSIEAKLQALEA 106
V+EN + DE++ L+ +L+ + + S + + + + L L+ E + + E+
Sbjct: 129 VIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAES 188
Query: 107 TCKSLEEKLDLVTNKQHS 124
C LEE+L +VTN S
Sbjct: 189 KCGDLEEELKIVTNNLKS 206
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 270 RTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAG 327
R + + + R + ++F P S YCP + G +P G L +Q P A G
Sbjct: 115 RGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRPGLWRRVPGGAFLLTAQSQPAAEG 172
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 270 RTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAG 327
R + + + R + ++F P S YCP + G +P G L +Q P A G
Sbjct: 115 RGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRPGLWRRVPGGAFLLTAQSQPAAEG 172
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 270 RTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAG 327
R + + + R + ++F P S YCP + G +P G L +Q P A G
Sbjct: 115 RGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRPGLWRRVPGGAFLLTAQSQPAAEG 172
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.2 bits (69), Expect = 1.5
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 274 RRKQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRR 333
R+ ++G S A R P P P LP GP+ Q +PG G T +
Sbjct: 1855 RKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP-GPVGPPGQGFPGVPGGTGP-K 1912
Query: 334 GLLGPRGSGRGWVATPGQR----HPGSV 357
G G GS +G PG+R PGSV
Sbjct: 1913 GDRGETGS-KGEQGLPGERGLRGEPGSV 1939
>gi|101943240 general transcription factor IIIC, polypeptide 1,
alpha 220kDa [Homo sapiens]
Length = 2109
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 170 DPLSNRAPDSLENVISNAVPGRRQNTIVVKVP---GQEDSHHEDGESGSEASD-SVSSCG 225
DPL A + + ISN+ R T VP +EDS ++G SGS S S SS
Sbjct: 700 DPLVRSAIEQVRFRISNSSTANRVKTSQPPVPQGEAEEDSQGKEGPSGSGDSQLSASSRS 759
Query: 226 QAGSQSIGSNVTLIT 240
++G N IT
Sbjct: 760 ESGRMKKSDNKMGIT 774
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 293 NSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGR 343
+SS CP +RG P P PP A T RR GP G R
Sbjct: 38 DSSGSCPCDGARGLPQPQPP-----SCSSRAAEAAATTPRRARTGPAGGQR 83
>gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 209
Score = 30.8 bits (68), Expect = 2.0
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 288 SRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVA 347
+RR SS P R P P P G ++ PG A GRG A
Sbjct: 132 ARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLA---------------GRGSPA 176
Query: 348 TPGQR---HPGSVRAAGAS 363
PG R PG V GAS
Sbjct: 177 RPGARASHPPGPVGVFGAS 195
>gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo
sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 274 RRKQRGQSLAVKSFSRRTPNSSSYCPSAASRG-----HPHPLPP 312
RR+QRG A SF R + + PSA G HP P PP
Sbjct: 109 RRRQRGWCSAQPSFGPRPDSPTPCTPSARPGGSSGAAHPRPQPP 152
>gi|239748853 PREDICTED: hypothetical protein XP_002346819 [Homo
sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 274 RRKQRGQSLAVKSFSRRTPNSSSYCPSAASRG-----HPHPLPP 312
RR+QRG A SF R + + PSA G HP P PP
Sbjct: 109 RRRQRGWCSAQPSFGPRPDSPTPCTPSARPGGSSGAAHPRPQPP 152
>gi|239742882 PREDICTED: hypothetical protein XP_002342638 [Homo
sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 274 RRKQRGQSLAVKSFSRRTPNSSSYCPSAASRG-----HPHPLPP 312
RR+QRG A SF R + + PSA G HP P PP
Sbjct: 109 RRRQRGWCSAQPSFGPRPDSPTPCTPSARPGGSSGAAHPRPQPP 152
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 30.4 bits (67), Expect = 2.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 92 LRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTC 142
L L +A+LQALE T K L++++D +T K V +G ++C
Sbjct: 815 LHLRHKQAQLQALETTAKVLKQRVDSLTAKLQGAEAPDTVRDPAVGLLRSC 865
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,402,730
Number of Sequences: 37866
Number of extensions: 762367
Number of successful extensions: 2866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2787
Number of HSP's gapped (non-prelim): 133
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.