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Search of human proteins with 239750947
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750947 PREDICTED: hypothetical protein XP_002347611 [Homo
sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756418 PREDICTED: hypothetical protein [Homo sapiens] 358 2e-99
gi|239750947 PREDICTED: hypothetical protein XP_002347611 [Homo ... 358 2e-99
gi|239745340 PREDICTED: hypothetical protein XP_002343429 [Homo ... 358 2e-99
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 42 2e-04
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 36 0.018
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 34 0.051
gi|118402590 myosin XV [Homo sapiens] 32 0.25
gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo ... 31 0.56
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 31 0.56
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 31 0.56
gi|126366080 regulator of G-protein signaling 9 isoform 2 [Homo ... 31 0.56
gi|126365761 regulator of G-protein signaling 9 isoform 1 [Homo ... 31 0.56
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 31 0.56
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 31 0.56
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 31 0.56
gi|106067657 luteinizing hormone/choriogonadotropin receptor pre... 30 0.96
gi|239757944 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|154426292 arachidonate 12-lipoxygenase [Homo sapiens] 30 1.3
gi|223941846 zinc finger protein 652 [Homo sapiens] 29 1.6
gi|7662384 zinc finger protein 652 [Homo sapiens] 29 1.6
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 29 1.6
gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 29 2.1
gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 28 2.8
gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 28 2.8
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 28 2.8
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 28 2.8
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 28 2.8
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 28 2.8
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 28 2.8
>gi|239756418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 358 bits (918), Expect = 2e-99
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS
Sbjct: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
Query: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ
Sbjct: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
Query: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG
Sbjct: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
>gi|239750947 PREDICTED: hypothetical protein XP_002347611 [Homo
sapiens]
Length = 167
Score = 358 bits (918), Expect = 2e-99
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS
Sbjct: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
Query: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ
Sbjct: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
Query: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG
Sbjct: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
>gi|239745340 PREDICTED: hypothetical protein XP_002343429 [Homo
sapiens]
Length = 167
Score = 358 bits (918), Expect = 2e-99
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS
Sbjct: 1 MGSGLTTDSAALEPQVQHRFSLGGRWVLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTS 60
Query: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ
Sbjct: 61 LSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPVQ 120
Query: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG
Sbjct: 121 VMTFPTDPLVSLTDNATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 42.4 bits (98), Expect = 2e-04
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 52 PTGKL-----TPTSLSNIP---IQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHL 103
PTGK TPT L++IP I AP ++ L+ PE + + P V P A+PSP
Sbjct: 775 PTGKWPSLPETPTGLADIPCLVIPPAPAKKTALQRSPETPLEICLVP-VGPSPASPSPEP 833
Query: 104 PLHILVAQPPNPDAPVQVMTF---PTDPLVSLT 133
P+ VA P P Q M P+ P+ S++
Sbjct: 834 PVSKPVASSPTEQVPSQEMPLLARPSPPVQSVS 866
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 35.8 bits (81), Expect = 0.018
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 42 PLVCNCKCVNPTGKLTPTSLSNIPIQ-AAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPS 100
PL C+ + P T L+ P AA + LP V+ P + P PS
Sbjct: 868 PLAMPCRTIVPNAPATIPLLAVAPPGVAALSIHSAVAQLPGQPVYPAAFPQMAPTDVPPS 927
Query: 101 PHLPLHILVAQPPNPDAPVQVMTFPTDPLV 130
PH + + A PP P P Q T P P++
Sbjct: 928 PHHTVQNMRATPPQPALPPQ-PTLPPQPVL 956
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 34.3 bits (77), Expect = 0.051
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 72 ERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLH---ILVAQPP----NPDAPVQVMTF 124
E +G+ LPE AP P +P P A PP NP AP T
Sbjct: 209 ELLGVMSLPEAPAAETPAPAANPPAPTANPTGPAANPPATTANPPAPAANPSAPAATPTG 268
Query: 125 PTD----PLVSLTDNA---TGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
P P S T + G T ++ +K GGPRGP P G
Sbjct: 269 PAANPPAPAASSTPHGHCPNGVTAGLGPVAEVKSSPVGGGPRGPAGPALG 318
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 52 PTGKLTPTSLSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQ 111
P L+P +LS +P A+P G + PW P H P+P V
Sbjct: 676 PAPPLSP-ALSGLPRPASPY----------GSLRRHPPPWAAPAHVPPAPQASWWAFVEP 724
Query: 112 PP-NPDAPVQVMTFP 125
P +P+ P ++ FP
Sbjct: 725 PAVSPEVPPDLLAFP 739
>gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo
sapiens]
Length = 870
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|126366080 regulator of G-protein signaling 9 isoform 2 [Homo
sapiens]
Length = 671
Score = 30.8 bits (68), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 96 HAAPSPHLPLHILVAQPPNPDAP 118
H APSPHL ++ PP+P +P
Sbjct: 470 HMAPSPHLTVYTGTCMPPSPSSP 492
>gi|126365761 regulator of G-protein signaling 9 isoform 1 [Homo
sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 96 HAAPSPHLPLHILVAQPPNPDAP 118
H APSPHL ++ PP+P +P
Sbjct: 473 HMAPSPHLTVYTGTCMPPSPSSP 495
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 76 LEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPDAPV----QVMTFPTDPLVS 131
LE+ P + EAP + P + S LP H + QPP D + P D V+
Sbjct: 250 LEEEPSSMQQ--EAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVT 307
Query: 132 LTDNATGETRT 142
+T T ET +
Sbjct: 308 ITSEPTNETES 318
>gi|106067657 luteinizing hormone/choriogonadotropin receptor
precursor [Homo sapiens]
Length = 699
Score = 30.0 bits (66), Expect = 0.96
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 34 RMLSLELKPLVCNC------KCVNPTGKLTPTSLSNIPIQAAPEE 72
R L L P CNC +C PT LT SL+ +P++ P +
Sbjct: 23 RALREALCPEPCNCVPDGALRCPGPTAGLTRLSLAYLPVKVIPSQ 67
>gi|239757944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 91 WVCPHHAAPSPHLPLH-ILVAQPPNPDAPVQ 120
W C H + SP LP H +V P +P+ P Q
Sbjct: 539 WRCQEHVSQSPSLPPHNAIVPSPTHPNKPGQ 569
>gi|154426292 arachidonate 12-lipoxygenase [Homo sapiens]
Length = 663
Score = 29.6 bits (65), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 99 PSPHLPLHILVAQPPNPDAPVQVMTFPTDP 128
P+ L ++ QPPNP +P + P+DP
Sbjct: 307 PNGKLQPMVIQIQPPNPSSPTPTLFLPSDP 336
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 1.6
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 57 TPTSLSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPD 116
TPT PI P + +P HL H P PH P H+ + PP P
Sbjct: 525 TPTP----PINMNPVSTLPPRPIPHPFSHL---------HIHPHPHHPHHLPI--PPVPH 569
Query: 117 APVQVMTFPTDPL 129
P F ++PL
Sbjct: 570 LPPPPALFKSEPL 582
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 1.6
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 57 TPTSLSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLHILVAQPPNPD 116
TPT PI P + +P HL H P PH P H+ + PP P
Sbjct: 525 TPTP----PINMNPVSTLPPRPIPHPFSHL---------HIHPHPHHPHHLPI--PPVPH 569
Query: 117 APVQVMTFPTDPL 129
P F ++PL
Sbjct: 570 LPPPPALFKSEPL 582
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 136 ATGETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
AT R R +LS K + SG R P P GHG
Sbjct: 1569 ATPGGRIREKLSRAKSAKVSGATRHPQPKGHG 1600
>gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 629
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 98 APSP-HLPLHILVAQPPNPDAPVQVMTFPTDPLVSLTDNAT 137
AP P H PL + PP P+ + TFP+ PLV+ D +
Sbjct: 156 APGPAHGPLLVTAGAPPG--GPLVLSTFPSTPLVTEQDGCS 194
>gi|239744140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 878
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 98 APSP-HLPLHILVAQPPNPDAPVQVMTFPTDPLVSLTDNAT 137
AP P H PL + PP P+ + TFP+ PLV+ D +
Sbjct: 156 APGPAHGPLLVTAGAPPG--GPLVLSTFPSTPLVTEQDGCS 194
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 28.5 bits (62), Expect = 2.8
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 37 SLELKPLVCNCKCVNPTGKLTPTSLS-----NIPIQAAPEERMGLEDLPEGVVHLWEAPW 91
SL + PL P+ + P SL+ N+P A P + L + P
Sbjct: 506 SLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPA 565
Query: 92 VCPHHAAPSPHLPLHILVAQPPNPDAPVQVMTFP 125
CP A PSP + PP P+ P + T P
Sbjct: 566 PCPLQAPPSP-------LTTPP-PETPSSIATPP 591
Score = 27.7 bits (60), Expect = 4.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 PHHAAPSPHLPLHILVAQPPNPDAPVQVMTFPTDP 128
P PSP L + +A PP+P AP + T P+ P
Sbjct: 328 PATLPPSPPLATPLPLA-PPSPSAPPSLQTLPSPP 361
>gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 878
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 98 APSP-HLPLHILVAQPPNPDAPVQVMTFPTDPLVSLTD 134
AP P H PL + PP P+ + TFP+ PLV+ D
Sbjct: 156 APGPAHGPLLVTAGAPPG--GPLVLSTFPSTPLVTEQD 191
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 50 VNPTGK---LTPTSLSNIPIQAAPEERMGLEDLPEGVVHLWEAPWVCPHHAAPSPHLPLH 106
+NP K +TP + +P+ + P +G + P P P+ + P LPL
Sbjct: 387 INPHFKGTVVTPVQVPLLPVPSQPRPAVGPQRFPGPPEFPQHTPGPVPNSFSQPPRLPLQ 446
Query: 107 ILVAQPPNP 115
PP P
Sbjct: 447 DQWRAPPPP 455
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 27 VLFLVCLRMLSLELKPLVCNCKCVNPTGKLTPTSLSNIPIQAAPEERM 74
+LF+ +R+L L+LKP N CVN TG L + + P E++
Sbjct: 394 ILFMHKMRVLHLDLKPE--NILCVNTTGHLVKIIDFGLARRYNPNEKL 439
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 82 GVVHLWEAPWVCPHHAAPSPHLPLHI---LVAQPPNPDAPVQVMTFPTDPLVSLTDNATG 138
G +H P+ P P+ P + +P P AP +P P +S + TG
Sbjct: 862 GHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
Query: 139 ETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
+++ A S P PP G
Sbjct: 922 QSQLYAAQHQASSPTSSPATSFPPPPSSG 950
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 82 GVVHLWEAPWVCPHHAAPSPHLPLHI---LVAQPPNPDAPVQVMTFPTDPLVSLTDNATG 138
G +H P+ P P+ P + +P P AP +P P +S + TG
Sbjct: 862 GHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
Query: 139 ETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
+++ A S P PP G
Sbjct: 922 QSQLYAAQHQASSPTSSPATSFPPPPSSG 950
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 82 GVVHLWEAPWVCPHHAAPSPHLPLHI---LVAQPPNPDAPVQVMTFPTDPLVSLTDNATG 138
G +H P+ P P+ P + +P P AP +P P +S + TG
Sbjct: 823 GHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 882
Query: 139 ETRTRAELSHLKRCQWSGGPRGPVPPGHG 167
+++ A S P PP G
Sbjct: 883 QSQLYAAQHQASSPTSSPATSFPPPPSSG 911
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,541
Number of Sequences: 37866
Number of extensions: 460621
Number of successful extensions: 1502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 107
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.