Guide to the Human Genome
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Search of human proteins with 239750813

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo
sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo ...   297   2e-81
gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo ...   297   2e-81
gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo ...   297   2e-81
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]            33   0.060
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]            33   0.060
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]            33   0.060
gi|239752802 PREDICTED: hypothetical protein [Homo sapiens]            33   0.078
gi|239747364 PREDICTED: hypothetical protein [Homo sapiens]            33   0.078
gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo ...    33   0.078
gi|221139926 NHS-like 1 [Homo sapiens]                                 33   0.10 
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]         32   0.23 
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          31   0.30 
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          31   0.30 
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          31   0.30 
gi|46909596 a disintegrin and metalloproteinase domain 15 isofor...    31   0.39 
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor...    30   0.50 
gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo ...    30   0.66 
gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo ...    30   0.66 
gi|42544243 dynamin 3 isoform a [Homo sapiens]                         30   0.66 
gi|209915561 dynamin 3 isoform b [Homo sapiens]                        30   0.66 
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]     30   0.66 
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]      30   0.66 
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]            30   0.86 
gi|40548408 p30 DBC protein [Homo sapiens]                             30   0.86 
gi|24432106 p30 DBC protein [Homo sapiens]                             30   0.86 
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]      29   1.1  
gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens]       29   1.1  

>gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo
           sapiens]
          Length = 141

 Score =  297 bits (761), Expect = 2e-81
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
           MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60

Query: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
           ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120

Query: 121 EGKSRLARPCLSQALEACQLT 141
           EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141


>gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo
           sapiens]
          Length = 141

 Score =  297 bits (761), Expect = 2e-81
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
           MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60

Query: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
           ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120

Query: 121 EGKSRLARPCLSQALEACQLT 141
           EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141


>gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo
           sapiens]
          Length = 141

 Score =  297 bits (761), Expect = 2e-81
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
           MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1   MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60

Query: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
           ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61  ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120

Query: 121 EGKSRLARPCLSQALEACQLT 141
           EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141


>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 33.5 bits (75), Expect = 0.060
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 48  ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
           A P+  R A R  P  +P SQ        +P ++   P GV +  P  R   H H AP H
Sbjct: 83  ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133

Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
           S   +   K      +   G+SRLAR  L+  ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168


>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 33.5 bits (75), Expect = 0.060
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 48  ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
           A P+  R A R  P  +P SQ        +P ++   P GV +  P  R   H H AP H
Sbjct: 83  ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133

Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
           S   +   K      +   G+SRLAR  L+  ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168


>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 33.5 bits (75), Expect = 0.060
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 48  ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
           A P+  R A R  P  +P SQ        +P ++   P GV +  P  R   H H AP H
Sbjct: 83  ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133

Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
           S   +   K      +   G+SRLAR  L+  ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168


>gi|239752802 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 33.1 bits (74), Expect = 0.078
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 13  LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
           L  R +G T  GA    VS  + L P+  +R       P+RP L R + R P      + 
Sbjct: 2   LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61

Query: 69  LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
               S R  P+  +L   +  T   ++  GH+HP P
Sbjct: 62  YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97


>gi|239747364 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 33.1 bits (74), Expect = 0.078
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 13  LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
           L  R +G T  GA    VS  + L P+  +R       P+RP L R + R P      + 
Sbjct: 2   LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61

Query: 69  LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
               S R  P+  +L   +  T   ++  GH+HP P
Sbjct: 62  YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97


>gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo
           sapiens]
          Length = 170

 Score = 33.1 bits (74), Expect = 0.078
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 13  LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
           L  R +G T  GA    VS  + L P+  +R       P+RP L R + R P      + 
Sbjct: 2   LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61

Query: 69  LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
               S R  P+  +L   +  T   ++  GH+HP P
Sbjct: 62  YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97


>gi|221139926 NHS-like 1 [Homo sapiens]
          Length = 1606

 Score = 32.7 bits (73), Expect = 0.10
 Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 44   CPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPA 103
            C  P RP L  +    P SLP    LL  SS  PP  P  P  +  T P   + G     
Sbjct: 989  CLSPPRPALSPILPDSPVSLPLPPPLL-PSSEPPPAPPLDPKFMKDTRPPFTNSGQ---- 1043

Query: 104  PFHSAALLVPVKPPTAWEGKSRLARPCL-SQALEACQL 140
            P  S   L   +PP+  E  SR   P + ++AL+  QL
Sbjct: 1044 PESSRGSL---RPPSTKEETSRPPMPLITTEALQMVQL 1078


>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
          Length = 924

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 42  SCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLP 84
           S  P+PA P  Q      PA  P S    W S   PPL P+ P
Sbjct: 89  SALPIPATPPTQA----QPAMTPASASPSWGSHSTPPLAPATP 127


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 20/65 (30%), Positives = 26/65 (40%)

Query: 45  PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
           P PA   L  L++ HP S       L   S+  P  P+ P G+  +  L   P  H P  
Sbjct: 411 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 470

Query: 105 FHSAA 109
            H  A
Sbjct: 471 LHQVA 475


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 20/65 (30%), Positives = 26/65 (40%)

Query: 45   PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
            P PA   L  L++ HP S       L   S+  P  P+ P G+  +  L   P  H P  
Sbjct: 965  PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 1024

Query: 105  FHSAA 109
             H  A
Sbjct: 1025 LHQVA 1029


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 20/65 (30%), Positives = 26/65 (40%)

Query: 45   PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
            P PA   L  L++ HP S       L   S+  P  P+ P G+  +  L   P  H P  
Sbjct: 965  PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 1024

Query: 105  FHSAA 109
             H  A
Sbjct: 1025 LHQVA 1029


>gi|46909596 a disintegrin and metalloproteinase domain 15 isoform 4
           preproprotein [Homo sapiens]
          Length = 838

 Score = 30.8 bits (68), Expect = 0.39
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 25/122 (20%)

Query: 2   ERPCHRMG-CCSLRRRQSGVTLRG-----AVVSGGVRLPASERRFLSCCPLPARPLLQRL 55
           +R C   G  C  R  QSG + R      A+++ G +   ++R      PLPA P+++  
Sbjct: 723 QRLCQLKGPTCQYRAAQSGPSERPGPPQRALLARGTKAELADRPNPPTRPLPADPVVRSP 782

Query: 56  ASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHS-AALLVPV 114
            S+ PA  P            PP  P      L  DP  R P    P P      L+VP 
Sbjct: 783 KSQGPAKPP------------PPRKP------LPADPQGRCPSGDLPGPGAGIPPLVVPS 824

Query: 115 KP 116
           +P
Sbjct: 825 RP 826


>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
           preproprotein [Homo sapiens]
          Length = 839

 Score = 30.4 bits (67), Expect = 0.50
 Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 36/128 (28%)

Query: 2   ERPCHRMG-CCSLRRRQSG-----------VTLRGAVVSGGVRLPASERRFLSCCPLPAR 49
           +R C   G  C  R  QSG           +  RG   +  +  PA   R     PLP  
Sbjct: 723 QRLCQLKGPTCQYRAAQSGPSERPGPPQRALLARGTKQASALSFPAPPSR-----PLPPD 777

Query: 50  PLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHS-A 108
           P+ +RL S+ PA  P            PP  P      L  DP  R P    P P     
Sbjct: 778 PVSKRLQSQGPAKPP------------PPRKP------LPADPQGRCPSGDLPGPGAGIP 819

Query: 109 ALLVPVKP 116
            L+VP +P
Sbjct: 820 PLVVPSRP 827


>gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo
           sapiens]
          Length = 260

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 5   CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35
           C R G  S RRR  G+ LRGA +SG    PA
Sbjct: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116


>gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
           sapiens]
          Length = 260

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 5   CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35
           C R G  S RRR  G+ LRGA +SG    PA
Sbjct: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116


>gi|42544243 dynamin 3 isoform a [Homo sapiens]
          Length = 863

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 60  PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPF------HSAALLVP 113
           PA  P     +  S R+PP  P+      ++ PL R      PAP       HS A  VP
Sbjct: 747 PAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVP 806

Query: 114 VKP 116
            +P
Sbjct: 807 FRP 809


>gi|209915561 dynamin 3 isoform b [Homo sapiens]
          Length = 859

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 60  PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPF------HSAALLVP 113
           PA  P     +  S R+PP  P+      ++ PL R      PAP       HS A  VP
Sbjct: 743 PAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVP 802

Query: 114 VKP 116
            +P
Sbjct: 803 FRP 805


>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
          Length = 2540

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 40  FLSCCPLPARPLLQRLA----SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTR 95
           FLS  P P      R      + HPA  P    L   SS+ P       L  + T PLT 
Sbjct: 732 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP-------LPTINTHPLTS 784

Query: 96  HPGH--HHPAPFHSAALLVPVKPPTAWEG 122
            P H  HHP   H    ++P  P  +  G
Sbjct: 785 GPHHAVHHP---HLLPTVLPGVPTASLLG 810


>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
          Length = 2303

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 40  FLSCCPLPARPLLQRLA----SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTR 95
           FLS  P P      R      + HPA  P    L   SS+ P       L  + T PLT 
Sbjct: 513 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP-------LPTINTHPLTS 565

Query: 96  HPGH--HHPAPFHSAALLVPVKPPTAWEG 122
            P H  HHP   H    ++P  P  +  G
Sbjct: 566 GPHHAVHHP---HLLPTVLPGVPTASLLG 591


>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 319

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 33  LPASERRFLSCCPLPARPLLQRLASRHPASL--------PCSQQLLWRSSRAPPLLPSLP 84
           L AS   F S    PARP L R AS  PA L          S QL      +P +LP   
Sbjct: 133 LGASATAFRSSSDPPARPRLFRRASASPAQLRLPSRLASALSAQLRLPHPSSPGVLPWRC 192

Query: 85  LGVLITDPLTRHPGHHHPAPFHSA--ALLVPVKPPTAW 120
           L + ++D     P       F +A  A   P   P AW
Sbjct: 193 LSLSVSDLKLPLPPSWPWLGFSAALPAAFRPCSAPPAW 230


>gi|40548408 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 47  PARPLLQRLA-SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
           PA PLL   A  +    L    QL+++  R PPL P  PL +  T   T H  H +  P
Sbjct: 125 PAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSH-TLHLSHLNRFP 182


>gi|24432106 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 47  PARPLLQRLA-SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
           PA PLL   A  +    L    QL+++  R PPL P  PL +  T   T H  H +  P
Sbjct: 125 PAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSH-TLHLSHLNRFP 182


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 34  PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
           PA +   LS   LP  PLL       P+S P    +L  ++  PPLLP++PL      P 
Sbjct: 748 PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 798

Query: 94  TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
           +    H  P+P  +A     +P+  PT     S +    P +S A
Sbjct: 799 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 843


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 34   PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
            PA +   LS   LP  PLL       P+S P    +L  ++  PPLLP++PL      P 
Sbjct: 949  PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 999

Query: 94   TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
            +    H  P+P  +A     +P+  PT     S +    P +S A
Sbjct: 1000 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 1044


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 34   PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
            PA +   LS   LP  PLL       P+S P    +L  ++  PPLLP++PL      P 
Sbjct: 949  PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 999

Query: 94   TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
            +    H  P+P  +A     +P+  PT     S +    P +S A
Sbjct: 1000 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 1044


>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
          Length = 4753

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 50   PLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
            PLL +L S HP SL C   L      +   +  L LG L+T PL
Sbjct: 1088 PLLTKLGSLHPQSLNCQCLLRALGLGSLQTIELLTLGQLLTYPL 1131


>gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens]
          Length = 1117

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 14  RRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARP--LLQRLASRHPASLPCSQQLLW 71
           +RR+S   L+G ++S GVR   S RR  S  P    P  ++ ++ +  P ++    QLL 
Sbjct: 48  QRRRSSAQLQGCLLSCGVRAQGSSRRRSSTVPPSCNPRFIVDKVLTPQPTTV--GAQLL- 104

Query: 72  RSSRAPPLLPSL 83
               AP LL  L
Sbjct: 105 ---GAPLLLTGL 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,853,030
Number of Sequences: 37866
Number of extensions: 358331
Number of successful extensions: 1648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 126
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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