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Search of human proteins with 239750384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750384 PREDICTED: hypothetical protein XP_002347385 [Homo
sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750384 PREDICTED: hypothetical protein XP_002347385 [Homo ... 370 e-103
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 41 6e-04
gi|157785645 SPEG complex locus [Homo sapiens] 37 0.007
gi|19924099 synapsin I isoform Ia [Homo sapiens] 36 0.019
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 35 0.043
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 33 0.097
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 33 0.097
gi|47132519 Ras association and pleckstrin homology domains 1 is... 33 0.13
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.13
gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens] 33 0.13
gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens] 33 0.13
gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens] 33 0.13
gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens] 33 0.13
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 32 0.22
gi|55770876 notch4 preproprotein [Homo sapiens] 32 0.22
gi|60460889 Myb protein P42POP [Homo sapiens] 32 0.28
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 0.37
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 32 0.37
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 32 0.37
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 32 0.37
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 31 0.48
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 31 0.48
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 31 0.48
gi|50345881 cytoplasmic polyadenylation element binding protein ... 31 0.63
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.63
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.63
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 31 0.63
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 31 0.63
>gi|239750384 PREDICTED: hypothetical protein XP_002347385 [Homo
sapiens]
Length = 175
Score = 370 bits (951), Expect = e-103
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MSAGQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRD 60
MSAGQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRD
Sbjct: 1 MSAGQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRD 60
Query: 61 PDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRKVV 120
PDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRKVV
Sbjct: 61 PDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRKVV 120
Query: 121 LSGWGLPGIRRPAVEPQGSTGQICLPGCLSYAESLAQGGGFSYWPRYLNGMEDRS 175
LSGWGLPGIRRPAVEPQGSTGQICLPGCLSYAESLAQGGGFSYWPRYLNGMEDRS
Sbjct: 121 LSGWGLPGIRRPAVEPQGSTGQICLPGCLSYAESLAQGGGFSYWPRYLNGMEDRS 175
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 6e-04
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1 MSAGQRRAGNPEPTLETSSIPQ-STGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSR 59
+S G G P+P PQ AA P+ +P +EALPPPA P + ++ SR
Sbjct: 307 VSTGSSSPGTPQPA------PQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISR 360
Query: 60 DPDW 63
P W
Sbjct: 361 PPPW 364
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 37.4 bits (85), Expect = 0.007
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 7 RAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAP 66
R +P P +P + G AE+ +PT +PP ++ N+ S + +EA
Sbjct: 2281 RVASPPPGAPEKRVPSAGGPPVLAEKARVPT---VPPRPGSSLSSSIENLES-EAVFEAK 2336
Query: 67 FD---QCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLE---RRKRGRKVV 120
F + +LGL RS E R + G + E G+ + + AGT LE R +R R V
Sbjct: 2337 FKRSRESPLSLGLRLLSRSRSEE-RGPFRGAEEEDGIYRPSPAGTPLELVRRPERSRSVQ 2395
Query: 121 -LSGWGLPGIRR 131
L G PG+ R
Sbjct: 2396 DLRAVGEPGLVR 2407
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTG 51
G PE T Q G A P++ P+ EALP P + P G
Sbjct: 1961 GTPETGAATPMDWQEQGRA-PSQDQEAPSPEALPSPGQEPAAG 2002
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.019
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 4 GQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDW 63
GQ+R G P+ + + A P RT PTT+ P P+ P G ++ P
Sbjct: 584 GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ-PRPSGPGPAGRPKPQLAQKPSQ 642
Query: 64 EAPFDQCACALGLCPPQEERSREL 87
+ P A A G PQ +S+ L
Sbjct: 643 DVPPPATAAAGGPPHPQLNKSQSL 666
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 34.7 bits (78), Expect = 0.043
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 1 MSAGQRRAGNPEPTLETSSIPQ-STGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSR 59
+S G G P+P PQ AA P+ +P +EALPPPA P + ++ SR
Sbjct: 307 VSTGSSSPGTPQPA------PQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISR 360
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 13 PTLETSSIPQSTGAAHPAERTSL--------PTTEALPPPARP-PVTGGQSNVTS 58
P + ++P + PA R S+ P TEA PPP P P G + V S
Sbjct: 335 PVPPSEALPPPACPSAPAPRRSIISRLFGTSPATEAAPPPPEPVPAAEGPATVQS 389
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 33.5 bits (75), Expect = 0.097
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 5 QRRAGNPEPTLETSSIPQSTGAAHPA----ERTSLPTTEALPPPARPPVTGGQSNVTSRD 60
+R G +P L+ +S GAA P E+TS+PT LPPP R +T TS
Sbjct: 2082 ERPLGTADPRLD-----KSIGAASPRPQSLEKTSVPTGLRLPPPDRLLITSSPKPQTSDR 2136
Query: 61 P 61
P
Sbjct: 2137 P 2137
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 33.5 bits (75), Expect = 0.097
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 5 QRRAGNPEPTLETSSIPQSTGAAHPA----ERTSLPTTEALPPPARPPVTGGQSNVTSRD 60
+R G +P L+ +S GAA P E+TS+PT LPPP R +T TS
Sbjct: 2351 ERPLGTADPRLD-----KSIGAASPRPQSLEKTSVPTGLRLPPPDRLLITSSPKPQTSDR 2405
Query: 61 P 61
P
Sbjct: 2406 P 2406
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 17/58 (29%)
Query: 11 PEPTLE-TSSIPQSTGAAHPAER----------------TSLPTTEALPPPARPPVTG 51
P PT + SSI S+GA HP + + P+ E LPPPA PP G
Sbjct: 971 PPPTPQRNSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPG 1028
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 4 GQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDW 63
GQ+R G P+ + + A P RT PTT+ P P+ P G ++ P
Sbjct: 584 GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ-PRPSGPGPAGRPKPQLAQKPSQ 642
Query: 64 EAPFDQCACALGLCPPQEERS 84
+ P A A G PQ + S
Sbjct: 643 DVPPPATAAAGGPPHPQLKAS 663
>gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens]
Length = 262
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFD 68
G PE T SS ++ HP RT+L T P P+ P V+ + E P D
Sbjct: 166 GGPEVTGSRSS--STSLVQHPPSRTTLKKTRGSPEPS-PEAAADGPTVSPPERRAEDPND 222
Query: 69 QCACALG--LCPPQEERSRELRRWWLGHQREAGVAQAAGAG 107
Q + G L P +E SR LG + A +AQ AG
Sbjct: 223 QIPGSPGPWLVPSEERLSRA-----LGVRGAAQLAQEMAAG 258
>gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens]
Length = 253
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFD 68
G PE T SS ++ HP RT+L T P P+ P V+ + E P D
Sbjct: 157 GGPEVTGSRSS--STSLVQHPPSRTTLKKTRGSPEPS-PEAAADGPTVSPPERRAEDPND 213
Query: 69 QCACALG--LCPPQEERSRELRRWWLGHQREAGVAQAAGAG 107
Q + G L P +E SR LG + A +AQ AG
Sbjct: 214 QIPGSPGPWLVPSEERLSRA-----LGVRGAAQLAQEMAAG 249
>gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens]
Length = 334
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFD 68
G PE T SS ++ HP RT+L T P P+ P V+ + E P D
Sbjct: 238 GGPEVTGSRSS--STSLVQHPPSRTTLKKTRGSPEPS-PEAAADGPTVSPPERRAEDPND 294
Query: 69 QCACALG--LCPPQEERSRELRRWWLGHQREAGVAQAAGAG 107
Q + G L P +E SR LG + A +AQ AG
Sbjct: 295 QIPGSPGPWLVPSEERLSRA-----LGVRGAAQLAQEMAAG 330
>gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens]
Length = 258
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFD 68
G PE T SS ++ HP RT+L T P P+ P V+ + E P D
Sbjct: 162 GGPEVTGSRSS--STSLVQHPPSRTTLKKTRGSPEPS-PEAAADGPTVSPPERRAEDPND 218
Query: 69 QCACALG--LCPPQEERSRELRRWWLGHQREAGVAQAAGAG 107
Q + G L P +E SR LG + A +AQ AG
Sbjct: 219 QIPGSPGPWLVPSEERLSRA-----LGVRGAAQLAQEMAAG 254
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 4 GQRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQS 54
G++ P P S++P ST P + SL ++ PPPAR GG +
Sbjct: 144 GEQAVAGPAP----STVPSSTSKDRPVSQPSLVGSKEEPPPARSGSGGGSA 190
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 9 GNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTG--GQSNVTSRDPDWEAP 66
G P P L S ++TG P R S P + P +P G G+S + D P
Sbjct: 1135 GPPSPCLYNGSCSETTGLGGPGFRCSCPHSSPGPRCQKPGAKGCEGRSGDGACDAGCSGP 1194
Query: 67 ---FDQCACALGLCPPQEERSRELRRWWL 92
+D C+LG+ P + R W L
Sbjct: 1195 GGNWDGGDCSLGVPDPWKGCPSHSRCWLL 1223
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 32.0 bits (71), Expect = 0.28
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 8 AGNPEPTLETSSIPQSTGAAHPAERTS----------LPTTEALPPPARPPV 49
+ +PEP S PQ G P ER S LP PPP PP+
Sbjct: 176 SSSPEPWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPL 227
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/112 (28%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 36 PTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQ 95
P A PP PP+ GG S SR + E + P + S W G
Sbjct: 687 PRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVST-----WDGSV 741
Query: 96 REAGVAQAAGAGTDLERRKRGRKVVLSGWGLPGIRRPAVEPQGSTGQICLPG 147
R G G E +G+K G PG+ P G G CLPG
Sbjct: 742 RTPG-------GRVKEGGLKGQK------GEPGVPGPPGR-AGPPGSPCLPG 779
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/112 (28%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 36 PTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQ 95
P A PP PP+ GG S SR + E + P + S W G
Sbjct: 272 PRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVST-----WDGSV 326
Query: 96 REAGVAQAAGAGTDLERRKRGRKVVLSGWGLPGIRRPAVEPQGSTGQICLPG 147
R G G E +G+K G PG+ P G G CLPG
Sbjct: 327 RTPG-------GRVKEGGLKGQK------GEPGVPGPPGR-AGPPGSPCLPG 364
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/112 (28%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 36 PTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQ 95
P A PP PP+ GG S SR + E + P + S W G
Sbjct: 452 PRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVST-----WDGSV 506
Query: 96 REAGVAQAAGAGTDLERRKRGRKVVLSGWGLPGIRRPAVEPQGSTGQICLPG 147
R G G E +G+K G PG+ P G G CLPG
Sbjct: 507 RTPG-------GRVKEGGLKGQK------GEPGVPGPPGR-AGPPGSPCLPG 544
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 31.6 bits (70), Expect = 0.37
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 5 QRRAGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWE 64
+ + G P ET PQ T + T + E P RPP G+ N D +WE
Sbjct: 369 ETKEGAASPAPET---PQPTSPETSPKETPMQPPEIPAPAHRPPEDEGEENEGEEDEEWE 425
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 31.2 bits (69), Expect = 0.48
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 9 GNPEPTLETSSIPQST--GAAHPAERTSLPTTEALPPPARPPVTGGQ---------SNVT 57
G P L S+P + GA P+E S P P + P TGG+ N +
Sbjct: 788 GTTGPRLPLPSVPSPSQEGAPLPSEEASAPDAPDALPDSPTPATGGEVSAIKLASALNGS 847
Query: 58 SRDPDWEAP 66
S P+ EAP
Sbjct: 848 SSSPEVEAP 856
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 31.2 bits (69), Expect = 0.48
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 26/118 (22%)
Query: 7 RAGNPEPTLETSSIPQSTGAAHPAERTS-------LPTTEALPPPARPPVTGGQSNVTSR 59
+A +P + +P + ++H A+ T LP T LP P PP++ S+ R
Sbjct: 778 QASDPAVARQHRPLPSTPDSSHHAQATPRWRYNKPLPPTPDLPQPHLPPISAPGSSRIYR 837
Query: 60 --------DPDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTD 109
DP E P L P RSR R GH G A+ A D
Sbjct: 838 PLPPLPIIDPPTEPP--------PLPPKSRGRSRSTRG---GHMNSGGHAKTRPACQD 884
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 94 HQREAGVAQAAGAGTDLERRKRGRKVVLSGWGLPGIRRPAVEPQGST 140
H+R++G +G + + K GW G+RRP++ P+GS+
Sbjct: 1007 HRRDSGRPPGDSSGQAVAPSEGANKH--KGWSRQGLRRPSILPEGSS 1051
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 31.2 bits (69), Expect = 0.48
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 8 AGNPEPTLETSSIPQSTGAAHPAERTSLPTTEALPPPA 45
A P P ++S+P ST A PA T +P + + P PA
Sbjct: 1750 ASAPLPPSTSASVPASTSAPLPATLTPVPASTSAPVPA 1787
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 5 QRRAGNPEP---TLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDP 61
QR+ P+P E S P S+ P E +++P AL P A PP G + P
Sbjct: 20 QRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVP---ALSPAAAPPAPNGPDKMQMESP 76
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 21 PQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQ 80
P + A PA + P +PP A PP+ + ++ +R CPP+
Sbjct: 279 PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTR-----------------CPPR 321
Query: 81 EERSRELRRWWLGHQREAGVAQAAGAGTDLERR 113
R R L + A + AGAG+ R
Sbjct: 322 APRLRRLEAGRRLRRTAAPLGPVAGAGSSFGGR 354
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 AGNPEP--TLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVT 50
AG PE + E S+ Q+ G P+E T LPT A A PP T
Sbjct: 714 AGQPEKPASQEVSTPSQARGEGSPSEATRLPTQGARSSAAFPPKT 758
Score = 26.9 bits (58), Expect = 9.0
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 24/116 (20%)
Query: 11 PEPTLETSS--IPQSTGAAHP------AERTSLPTTEALPPPARPPVTGGQSNVTSRDPD 62
P P L ++ +P + AAHP ++S P + P P P T + V RDP
Sbjct: 406 PAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Query: 63 WEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRK 118
E+ EL + G +RE T + K G+K
Sbjct: 466 ----------------QMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKK 505
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 21 PQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQ 80
P + A PA + P +PP A PP+ + ++ +R CPP+
Sbjct: 369 PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTR-----------------CPPR 411
Query: 81 EERSRELRRWWLGHQREAGVAQAAGAGTDLERR 113
R R L + A + AGAG+ R
Sbjct: 412 APRLRRLEAGRRLRRTAAPLGPVAGAGSSFGGR 444
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 AGNPEP--TLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVT 50
AG PE + E S+ Q+ G P+E T LPT A A PP T
Sbjct: 714 AGQPEKPASQEVSTPSQARGEGSPSEATRLPTQGARSSAAFPPKT 758
Score = 26.9 bits (58), Expect = 9.0
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 24/116 (20%)
Query: 11 PEPTLETSS--IPQSTGAAHP------AERTSLPTTEALPPPARPPVTGGQSNVTSRDPD 62
P P L ++ +P + AAHP ++S P + P P P T + V RDP
Sbjct: 406 PAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Query: 63 WEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRK 118
E+ EL + G +RE T + K G+K
Sbjct: 466 ----------------QMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKK 505
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 21 PQSTGAAHPAERTSLPTTEALPPPARPPVTGGQSNVTSRDPDWEAPFDQCACALGLCPPQ 80
P + A PA + P +PP A PP+ + ++ +R CPP+
Sbjct: 369 PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTR-----------------CPPR 411
Query: 81 EERSRELRRWWLGHQREAGVAQAAGAGTDLERR 113
R R L + A + AGAG+ R
Sbjct: 412 APRLRRLEAGRRLRRTAAPLGPVAGAGSSFGGR 444
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 AGNPEP--TLETSSIPQSTGAAHPAERTSLPTTEALPPPARPPVT 50
AG PE + E S+ Q+ G P+E T LPT A A PP T
Sbjct: 714 AGQPEKPASQEVSTPSQARGEGSPSEATRLPTQGARSSAAFPPKT 758
Score = 26.9 bits (58), Expect = 9.0
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 24/116 (20%)
Query: 11 PEPTLETSS--IPQSTGAAHP------AERTSLPTTEALPPPARPPVTGGQSNVTSRDPD 62
P P L ++ +P + AAHP ++S P + P P P T + V RDP
Sbjct: 406 PAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Query: 63 WEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGVAQAAGAGTDLERRKRGRK 118
E+ EL + G +RE T + K G+K
Sbjct: 466 ----------------QMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKK 505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,943,828
Number of Sequences: 37866
Number of extensions: 506297
Number of successful extensions: 2820
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 411
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.