Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750049
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750049 PREDICTED: hypothetical protein XP_002347265 [Homo
sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750049 PREDICTED: hypothetical protein XP_002347265 [Homo ... 176 4e-45
gi|94400932 syntaxin 5 [Homo sapiens] 154 1e-38
gi|27734961 hypothetical protein LOC160298 [Homo sapiens] 32 0.083
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 31 0.24
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 31 0.24
gi|50345997 E1A binding protein p300 [Homo sapiens] 30 0.31
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 0.31
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 0.31
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 30 0.31
gi|60460889 Myb protein P42POP [Homo sapiens] 30 0.31
gi|47132519 Ras association and pleckstrin homology domains 1 is... 30 0.31
gi|146134388 YLP motif containing 1 [Homo sapiens] 30 0.31
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 30 0.41
gi|148613878 acrosin precursor [Homo sapiens] 30 0.41
gi|4504713 insulinoma-associated 1 [Homo sapiens] 30 0.41
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 30 0.54
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 30 0.54
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 30 0.54
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 30 0.54
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 29 0.70
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 29 0.70
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 29 0.70
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 29 0.70
gi|40018640 parafibromin [Homo sapiens] 29 0.91
gi|21361337 eukaryotic translation initiation factor 5 [Homo sap... 29 0.91
gi|37537716 eukaryotic translation initiation factor 5 [Homo sap... 29 0.91
gi|88703045 proline rich 11 [Homo sapiens] 29 0.91
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 28 1.2
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 28 1.2
>gi|239750049 PREDICTED: hypothetical protein XP_002347265 [Homo
sapiens]
Length = 85
Score = 176 bits (446), Expect = 4e-45
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR 60
MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
Sbjct: 1 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR 60
Query: 61 TQEFLSACKSLQTRQVRTWSGKGEE 85
TQEFLSACKSLQTRQVRTWSGKGEE
Sbjct: 61 TQEFLSACKSLQTRQVRTWSGKGEE 85
>gi|94400932 syntaxin 5 [Homo sapiens]
Length = 355
Score = 154 bits (390), Expect = 1e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR 60
MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
Sbjct: 1 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR 60
Query: 61 TQEFLSACKSLQTRQ 75
TQEFLSACKSLQTRQ
Sbjct: 61 TQEFLSACKSLQTRQ 75
>gi|27734961 hypothetical protein LOC160298 [Homo sapiens]
Length = 333
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 20 LSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEF 64
LS L+P +A + +++ A +PPPV P PP D+ F
Sbjct: 230 LSIMPPLAPTSASADTTEAADVPPPVPAPPTPPPQEGPEDKPTRF 274
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 33 SSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLS 66
SS D AP P V ++ PPP+ + D+T F++
Sbjct: 28 SSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVA 61
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 33 SSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLS 66
SS D AP P V ++ PPP+ + D+T F++
Sbjct: 28 SSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVA 61
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 20 LSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
L +TQ P + G ++ + P PP T PP P
Sbjct: 1887 LPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLP 1919
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 24 QVLSPATAGS---SSSDIAPLPPPVTLVPPPPDTMS 56
Q +S GS S AP PPP+ L PPPP +M+
Sbjct: 152 QDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMA 187
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 20 LSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
LS LS + + I P PP L PPPP
Sbjct: 197 LSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 28 PATAGSSSSDIAPLPPPVTLVPPPPDTM 55
P+TA + PPP ++ PPPP +
Sbjct: 167 PSTAPPPPPLLLEPPPPPSMAPPPPPVL 194
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 24 QVLSPATAGS---SSSDIAPLPPPVTLVPPPPDTMS 56
Q +S GS S AP PPP+ L PPPP +M+
Sbjct: 152 QDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMA 187
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 20 LSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
LS LS + + I P PP L PPPP
Sbjct: 197 LSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 28 PATAGSSSSDIAPLPPPVTLVPPPPDTM 55
P+TA + PPP ++ PPPP +
Sbjct: 167 PSTAPPPPPLLLEPPPPPSMAPPPPPVL 194
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 24 QVLSPATAGS---SSSDIAPLPPPVTLVPPPPDTMS 56
Q +S GS S AP PPP+ L PPPP +M+
Sbjct: 152 QDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMA 187
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 20 LSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
LS LS + + I P PP L PPPP
Sbjct: 197 LSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 28 PATAGSSSSDIAPLPPPVTLVPPPPDTM 55
P+TA + PPP ++ PPPP +
Sbjct: 167 PSTAPPPPPLLLEPPPPPSMAPPPPPVL 194
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 18 LGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLSA 67
L LS P + +AP PP P PP T+S D + +FL A
Sbjct: 216 LALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRA 265
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 24 QVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
++++P TA S + P PPP PPPP
Sbjct: 614 KIVTPYTASQPSPPLPPPPPPPPPPPPPP 642
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 22 KTQVLSPATAG---SSSSDIAPLPPPVTLVPPP 51
K +V PAT+ S SS+ PLPPP VPPP
Sbjct: 331 KEEVTVPATSQVPESPSSEEPPLPPPNEEVPPP 363
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 38 IAPLPPPVTLVPPPP 52
I P PPP L PPPP
Sbjct: 1546 IPPPPPPPPLPPPPP 1560
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 39 APLPPPVTLVPPPPDTMSCRDRTQEFLSACKSLQ 72
+PLPPP PPPP T S + + LS K LQ
Sbjct: 293 SPLPPPP---PPPPPTPSSTTKLPQGLSFAKRLQ 323
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 39 APLPPPVTLVPPPPDTMSCRDRTQEFLSACKSLQ 72
+PLPPP PPPP T S + + LS K LQ
Sbjct: 359 SPLPPPP---PPPPPTPSSTTKLPQGLSFAKRLQ 389
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 25 VLSPATAGSSSSDIAPLPPPVTLVPPPP 52
+LSP+ G+ + AP P P L PPPP
Sbjct: 31 LLSPSCGGARAEPPAPSPVPGPLPPPPP 58
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 29.6 bits (65), Expect = 0.54
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 31 AGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLS 66
A S+++ + L P ++PPPPD D+ E+++
Sbjct: 433 ATSTTTTTSALAPVAAIIPPPPDVQPVIDKLAEYVA 468
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 KRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
+R G K ++ V G K S A G SS P VT +PPPP
Sbjct: 207 ERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGP---KVTYIPPPP 251
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 KRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
+R G K ++ V G K S A G SS P VT +PPPP
Sbjct: 207 ERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGP---KVTYIPPPP 251
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 KRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
+R G K ++ V G K S A G SS P VT +PPPP
Sbjct: 173 ERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGP---KVTYIPPPP 217
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 27 SPATAGSSSSDIAPLP-PPVTLVPPPP 52
SPATA +++S P P PP+TL PP P
Sbjct: 300 SPATAVTAASAQPPGPAPPITLEPPAP 326
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 28 PATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLSA--CKSLQTRQVRT 78
P+T SSS P P + VPP +T+ ++ Q++L C+S + RT
Sbjct: 147 PSTQADSSSATLPPPYQLINVPPHLETLGIQEDPQDYLLLINCQSKKPEPTRT 199
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 28 PATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLSA--CKSLQTRQVRT 78
P+T SSS P P + VPP +T+ ++ Q++L C+S + RT
Sbjct: 147 PSTQADSSSATLPPPYQLINVPPHLETLGIQEDPQDYLLLINCQSKKPEPTRT 199
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 27 SPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFL 65
SP+++ SSSS PLPPP PPPP S + FL
Sbjct: 188 SPSSSPSSSS---PLPPP----PPPPSFSSSSSSSFPFL 219
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 27 SPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFL 65
SP+++ SSSS PLPPP PPPP S + FL
Sbjct: 188 SPSSSPSSSS---PLPPP----PPPPSFSSSSSSSFPFL 219
>gi|40018640 parafibromin [Homo sapiens]
Length = 531
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 8 GSKNTDQGVYLGLSKTQVLSPATAGSSSSDIA-PLPPPVTLVPPPPD 53
G K G Y G++ V A+A + + A P+P PV+ PPP+
Sbjct: 306 GFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPN 352
>gi|21361337 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 34 SSSDIAPLPPPVTLVPPPPDTM 55
SSS+ P PPP + PPP TM
Sbjct: 174 SSSETPPPPPPPNEINPPPHTM 195
>gi|37537716 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 34 SSSDIAPLPPPVTLVPPPPDTM 55
SSS+ P PPP + PPP TM
Sbjct: 174 SSSETPPPPPPPNEINPPPHTM 195
>gi|88703045 proline rich 11 [Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 23 TQVLSPATAGSSSSDIAPLPPPVTLVPPPP 52
++ + P T +S P PPP L PPPP
Sbjct: 169 SKAVLPPTLPQPASHFPPPPPPPPLPPPPP 198
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 26 LSPATAGSSSSDIAPLPPPVTLVPPPPDTMS 56
LSP T GS + P P P +PPP + S
Sbjct: 566 LSPITEGSEARAGPPAPAPPAPIPPPAPSQS 596
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 26 LSPATAGSSSSDIAPLPPPVTLVPPPPDTMS 56
LSP T GS + P P P +PPP + S
Sbjct: 566 LSPITEGSEARAGPPAPAPPAPIPPPAPSQS 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,457,580
Number of Sequences: 37866
Number of extensions: 230045
Number of successful extensions: 2517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 524
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.