Guide to the Human Genome
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Search of human proteins with 239750021

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]
         (188 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755507 PREDICTED: hypothetical protein [Homo sapiens]           393   e-110
gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]           393   e-110
gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo ...   393   e-110
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.050
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.050
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    35   0.050
gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo s...    33   0.11 
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...    32   0.42 
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]            32   0.42 
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]      32   0.42 
gi|46409340 ankyrin repeat domain 13 family, member D [Homo sapi...    31   0.55 
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ...    31   0.72 
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]    31   0.72 
gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]            29   2.1  
gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]            29   2.1  
gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]            29   2.1  
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho...    29   2.1  
gi|5803121 protein disulfide isomerase A5 [Homo sapiens]               29   2.7  
gi|150170699 kinesin family member 26A [Homo sapiens]                  29   2.7  
gi|169214758 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|169214978 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo ...    28   3.6  
gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|169214665 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo ...    28   3.6  
gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|38348332 killer cell lectin-like receptor subfamily G, member...    28   3.6  
gi|4885563 protein kinase C, epsilon [Homo sapiens]                    28   4.7  

>gi|239755507 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score =  393 bits (1009), Expect = e-110
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
           MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60

Query: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
           PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120

Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
           IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180

Query: 181 GRVWIGAD 188
           GRVWIGAD
Sbjct: 181 GRVWIGAD 188


>gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score =  393 bits (1009), Expect = e-110
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
           MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60

Query: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
           PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120

Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
           IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180

Query: 181 GRVWIGAD 188
           GRVWIGAD
Sbjct: 181 GRVWIGAD 188


>gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo
           sapiens]
          Length = 188

 Score =  393 bits (1009), Expect = e-110
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
           MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1   MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60

Query: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
           PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61  PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120

Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
           IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180

Query: 181 GRVWIGAD 188
           GRVWIGAD
Sbjct: 181 GRVWIGAD 188


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 20  KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
           K +A AGAGA++    Q  LGE+ +G ++  V+    + L  R LL+  ++G   G G G
Sbjct: 734 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 788

Query: 80  GTVVIDGGRVT 90
           G    +GG VT
Sbjct: 789 GPGGAEGGGVT 799


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
          Length = 1124

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 20   KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
            K +A AGAGA++    Q  LGE+ +G ++  V+    + L  R LL+  ++G   G G G
Sbjct: 1003 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 1057

Query: 80   GTVVIDGGRVT 90
            G    +GG VT
Sbjct: 1058 GPGGAEGGGVT 1068


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 20  KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
           K +A AGAGA++    Q  LGE+ +G ++  V+    + L  R LL+  ++G   G G G
Sbjct: 695 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 749

Query: 80  GTVVIDGGRVT 90
           G    +GG VT
Sbjct: 750 GPGGAEGGGVT 760


>gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
           sapiens]
          Length = 783

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 59  LGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQR 115
           LG R L I  S G+L    DG  VV  G    +VT VS+ +P   Q    ++ Y Q+
Sbjct: 51  LGNRKLEI--SSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQK 105


>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
           [Homo sapiens]
          Length = 471

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 124 GAGVRAQRGPWRWRRLPQAPPPP 146
           G   RAQ  P  W R PQ PPPP
Sbjct: 53  GPARRAQAPPEEWERRPQLPPPP 75


>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 126 GVRAQRGPWRWRRLPQA---PPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVGGR 182
           G ++QRG   W  +P +   PPPP+   L    GR A         GG  PPC GG   R
Sbjct: 56  GPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSP--PRGGCLPPCDGGPESR 113


>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
          Length = 471

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 124 GAGVRAQRGPWRWRRLPQAPPPP 146
           G   RAQ  P  W R PQ PPPP
Sbjct: 53  GPARRAQAPPEEWERRPQLPPPP 75


>gi|46409340 ankyrin repeat domain 13 family, member D [Homo
           sapiens]
          Length = 518

 Score = 31.2 bits (69), Expect = 0.55
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 7/144 (4%)

Query: 5   VCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGL 64
           +C C  PL         SA A +G     +V   + E+  G+   G+            L
Sbjct: 340 LCGCDEPLSSVWVPAPSSAVAASGNPFPCEVDPTVFEVPNGYSVLGMERNEPLRDEDDDL 399

Query: 65  LIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRVIGQG 124
           L F     L+  G       +  +VT+   ++  RP A       +   Q  L+R + + 
Sbjct: 400 LQFAIQQSLLEAGT------EAEQVTVWEALTNTRPGARPPPQATVYEEQLQLERALQES 453

Query: 125 AGVRAQ-RGPWRWRRLPQAPPPPS 147
             +  + RGP    R P AP PPS
Sbjct: 454 LQLSTEPRGPGSPPRTPPAPGPPS 477


>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
           sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 0.72
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 119 RVIGQGAGVRAQRGP----WRWRRLPQA----PPPPSAWGLSPLWGRQAV 160
           +V+GQ +G R  R P    W  RRL       P  P AWGLSP+  R+ V
Sbjct: 316 KVLGQ-SGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV 364


>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
          Length = 955

 Score = 30.8 bits (68), Expect = 0.72
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 122 GQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPP 174
           G  AGVR  R P    RLP + P    W LS L       A  L   G +RPP
Sbjct: 308 GPPAGVRTTRLPSPTPRLPTSSPSAPVWLLSTLLATPVPTASLL---GNLRPP 357


>gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
           QG   R  RG  RW    R    AP PPS    SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149


>gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
           QG   R  RG  RW    R    AP PPS    SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149


>gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
           QG   R  RG  RW    R    AP PPS    SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149


>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
           sapiens]
          Length = 628

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 127 VRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVGG 181
           VR + GP   +R  +  PPP   GLS     Q  +   L   GG     RGG GG
Sbjct: 571 VRRKGGPCCRQRREKGAPPPGEPGLSHSGSEQPEQTGLLM--GGASGGARGGSGG 623


>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
          Length = 519

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 127 VRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTD 168
           +R ++    W + P+APPPP      P W  Q    L L  D
Sbjct: 369 LRTKKKFLEWMQNPEAPPPP-----EPTWEEQQTSVLHLVGD 405


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 52   LGEAGRGLGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLI 111
            +G A  G  P G      D  L+  G+  T     GR    T+ S   P+A  +  C   
Sbjct: 1223 VGCARLGQSPPGRGGLFEDPWLLRVGECDTQAASAGRAPSPTLGSPRLPEAQVMLACA-- 1280

Query: 112  YHQRVLDRVIGQGAGVRAQRGPWRWRRLPQ---------APPPPSAWGLSP 153
              QRV+D   G     RA R P    R+P             P  +WG +P
Sbjct: 1281 --QRVVD---GCEVAARAARRPEAVARIPPLRRGATTLGVTTPAVSWGDAP 1326


>gi|169214758 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 15/30 (50%), Positives = 15/30 (50%)

Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
           L  V G   G RAQRG   WRR    P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169


>gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 290

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
           G +A++G W+    P AP  P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144


>gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
           QG   +AQ    RGPWR  R P  P  P A   S  W R   + + L   G     C
Sbjct: 50  QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103


>gi|169214978 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 15/30 (50%), Positives = 15/30 (50%)

Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
           L  V G   G RAQRG   WRR    P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169


>gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
           sapiens]
          Length = 290

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
           G +A++G W+    P AP  P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144


>gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
           QG   +AQ    RGPWR  R P  P  P A   S  W R   + + L   G     C
Sbjct: 50  QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103


>gi|169214665 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 15/30 (50%), Positives = 15/30 (50%)

Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
           L  V G   G RAQRG   WRR    P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169


>gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo
           sapiens]
          Length = 290

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
           G +A++G W+    P AP  P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144


>gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
           QG   +AQ    RGPWR  R P  P  P A   S  W R   + + L   G     C
Sbjct: 50  QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103


>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
           [Homo sapiens]
          Length = 409

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 96  SEARPQAHQLQLCMLIYHQRVLDRV-IGQGAGVRAQRGPWRWRRLPQAPPPP 146
           S+A   A+   L +L + Q  L R  + + + V A RGP  W  + +AP PP
Sbjct: 317 SQAFCSAYHATLPLLSHTQDFLGRYPVSRHSWVGAWRGPQGWHWIDEAPLPP 368


>gi|4885563 protein kinase C, epsilon [Homo sapiens]
          Length = 737

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 101 QAHQLQLCMLIYHQRVLDRVIGQGAGVRAQRGP 133
           Q +Q Q+C  + H+R  + +I + AG++ Q  P
Sbjct: 197 QGYQCQVCTCVVHKRCHELIITKCAGLKKQETP 229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.142    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,195,010
Number of Sequences: 37866
Number of extensions: 483790
Number of successful extensions: 1709
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 62
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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