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Search of human proteins with 239750021
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755507 PREDICTED: hypothetical protein [Homo sapiens] 393 e-110
gi|239750021 PREDICTED: hypothetical protein [Homo sapiens] 393 e-110
gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo ... 393 e-110
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.050
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.050
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.050
gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo s... 33 0.11
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 32 0.42
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens] 32 0.42
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 32 0.42
gi|46409340 ankyrin repeat domain 13 family, member D [Homo sapi... 31 0.55
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 31 0.72
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 31 0.72
gi|169214094 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|169214487 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|169213441 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho... 29 2.1
gi|5803121 protein disulfide isomerase A5 [Homo sapiens] 29 2.7
gi|150170699 kinesin family member 26A [Homo sapiens] 29 2.7
gi|169214758 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239754392 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|169165751 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|169214978 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo ... 28 3.6
gi|169166086 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|169214665 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo ... 28 3.6
gi|169165286 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|38348332 killer cell lectin-like receptor subfamily G, member... 28 3.6
gi|4885563 protein kinase C, epsilon [Homo sapiens] 28 4.7
>gi|239755507 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 393 bits (1009), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
Query: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
Query: 181 GRVWIGAD 188
GRVWIGAD
Sbjct: 181 GRVWIGAD 188
>gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 393 bits (1009), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
Query: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
Query: 181 GRVWIGAD 188
GRVWIGAD
Sbjct: 181 GRVWIGAD 188
>gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo
sapiens]
Length = 188
Score = 393 bits (1009), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG
Sbjct: 1 MARWVCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLG 60
Query: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV
Sbjct: 61 PRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRV 120
Query: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG
Sbjct: 121 IGQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVG 180
Query: 181 GRVWIGAD 188
GRVWIGAD
Sbjct: 181 GRVWIGAD 188
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.7 bits (78), Expect = 0.050
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 20 KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
K +A AGAGA++ Q LGE+ +G ++ V+ + L R LL+ ++G G G G
Sbjct: 734 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 788
Query: 80 GTVVIDGGRVT 90
G +GG VT
Sbjct: 789 GPGGAEGGGVT 799
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.050
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 20 KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
K +A AGAGA++ Q LGE+ +G ++ V+ + L R LL+ ++G G G G
Sbjct: 1003 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 1057
Query: 80 GTVVIDGGRVT 90
G +GG VT
Sbjct: 1058 GPGGAEGGGVT 1068
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.7 bits (78), Expect = 0.050
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 20 KDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGLLIFLSDGRLIGRGDG 79
K +A AGAGA++ Q LGE+ +G ++ V+ + L R LL+ ++G G G G
Sbjct: 695 KAAAGAGAGASSRSPKQARLGELPLGALQASVV----QHLLSRTLLLAAAEGAAGGSG-G 749
Query: 80 GTVVIDGGRVT 90
G +GG VT
Sbjct: 750 GPGGAEGGGVT 760
>gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
sapiens]
Length = 783
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 59 LGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQR 115
LG R L I S G+L DG VV G +VT VS+ +P Q ++ Y Q+
Sbjct: 51 LGNRKLEI--SSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQK 105
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 31.6 bits (70), Expect = 0.42
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 124 GAGVRAQRGPWRWRRLPQAPPPP 146
G RAQ P W R PQ PPPP
Sbjct: 53 GPARRAQAPPEEWERRPQLPPPP 75
>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 31.6 bits (70), Expect = 0.42
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 126 GVRAQRGPWRWRRLPQA---PPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVGGR 182
G ++QRG W +P + PPPP+ L GR A GG PPC GG R
Sbjct: 56 GPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSP--PRGGCLPPCDGGPESR 113
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 31.6 bits (70), Expect = 0.42
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 124 GAGVRAQRGPWRWRRLPQAPPPP 146
G RAQ P W R PQ PPPP
Sbjct: 53 GPARRAQAPPEEWERRPQLPPPP 75
>gi|46409340 ankyrin repeat domain 13 family, member D [Homo
sapiens]
Length = 518
Score = 31.2 bits (69), Expect = 0.55
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 7/144 (4%)
Query: 5 VCSCSSPLMMQENSPKDSAPAGAGAATHEDVQEFLGEMDVGFIRRGVLGEAGRGLGPRGL 64
+C C PL SA A +G +V + E+ G+ G+ L
Sbjct: 340 LCGCDEPLSSVWVPAPSSAVAASGNPFPCEVDPTVFEVPNGYSVLGMERNEPLRDEDDDL 399
Query: 65 LIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQRVLDRVIGQG 124
L F L+ G + +VT+ ++ RP A + Q L+R + +
Sbjct: 400 LQFAIQQSLLEAGT------EAEQVTVWEALTNTRPGARPPPQATVYEEQLQLERALQES 453
Query: 125 AGVRAQ-RGPWRWRRLPQAPPPPS 147
+ + RGP R P AP PPS
Sbjct: 454 LQLSTEPRGPGSPPRTPPAPGPPS 477
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 0.72
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 119 RVIGQGAGVRAQRGP----WRWRRLPQA----PPPPSAWGLSPLWGRQAV 160
+V+GQ +G R R P W RRL P P AWGLSP+ R+ V
Sbjct: 316 KVLGQ-SGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV 364
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 30.8 bits (68), Expect = 0.72
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 122 GQGAGVRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPP 174
G AGVR R P RLP + P W LS L A L G +RPP
Sbjct: 308 GPPAGVRTTRLPSPTPRLPTSSPSAPVWLLSTLLATPVPTASLL---GNLRPP 357
>gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
QG R RG RW R AP PPS SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149
>gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
QG R RG RW R AP PPS SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149
>gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 123 QGAGVRAQRGPWRW----RRLPQAPPPPSAWGLSPLW 155
QG R RG RW R AP PPS SPLW
Sbjct: 113 QGKAERPARGGPRWCQSSRPSVHAPRPPSNLACSPLW 149
>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 628
Score = 29.3 bits (64), Expect = 2.1
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 127 VRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPCRGGVGG 181
VR + GP +R + PPP GLS Q + L GG RGG GG
Sbjct: 571 VRRKGGPCCRQRREKGAPPPGEPGLSHSGSEQPEQTGLLM--GGASGGARGGSGG 623
>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
Length = 519
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 127 VRAQRGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTD 168
+R ++ W + P+APPPP P W Q L L D
Sbjct: 369 LRTKKKFLEWMQNPEAPPPP-----EPTWEEQQTSVLHLVGD 405
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 28.9 bits (63), Expect = 2.7
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 52 LGEAGRGLGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLI 111
+G A G P G D L+ G+ T GR T+ S P+A + C
Sbjct: 1223 VGCARLGQSPPGRGGLFEDPWLLRVGECDTQAASAGRAPSPTLGSPRLPEAQVMLACA-- 1280
Query: 112 YHQRVLDRVIGQGAGVRAQRGPWRWRRLPQ---------APPPPSAWGLSP 153
QRV+D G RA R P R+P P +WG +P
Sbjct: 1281 --QRVVD---GCEVAARAARRPEAVARIPPLRRGATTLGVTTPAVSWGDAP 1326
>gi|169214758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
L V G G RAQRG WRR P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169
>gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 28.5 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
G +A++G W+ P AP P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144
>gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 3.6
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
QG +AQ RGPWR R P P P A S W R + + L G C
Sbjct: 50 QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103
>gi|169214978 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
L V G G RAQRG WRR P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169
>gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
sapiens]
Length = 290
Score = 28.5 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
G +A++G W+ P AP P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144
>gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 3.6
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
QG +AQ RGPWR R P P P A S W R + + L G C
Sbjct: 50 QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103
>gi|169214665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 117 LDRVIGQGAGVRAQRGPWRWRRLPQAPPPP 146
L V G G RAQRG WRR P PP
Sbjct: 140 LASVGGSSRGCRAQRGFGGWRRAAVDPGPP 169
>gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo
sapiens]
Length = 290
Score = 28.5 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 126 GVRAQRGPWRWRRLPQAPPPPSAWGLSP 153
G +A++G W+ P AP P+ WG +P
Sbjct: 117 GCKAKKGCWQASCAPLAPGFPAVWGRNP 144
>gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 3.6
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 123 QGAGVRAQ----RGPWRWRRLPQAPPPPSAWGLSPLWGRQAVEALFLFTDGGVRPPC 175
QG +AQ RGPWR R P P P A S W R + + L G C
Sbjct: 50 QGHSHQAQHLPARGPWRVLRRPPQPTAPRA---SDAWHRSGPQRVALTRRGSCGSQC 103
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 28.5 bits (62), Expect = 3.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 96 SEARPQAHQLQLCMLIYHQRVLDRV-IGQGAGVRAQRGPWRWRRLPQAPPPP 146
S+A A+ L +L + Q L R + + + V A RGP W + +AP PP
Sbjct: 317 SQAFCSAYHATLPLLSHTQDFLGRYPVSRHSWVGAWRGPQGWHWIDEAPLPP 368
>gi|4885563 protein kinase C, epsilon [Homo sapiens]
Length = 737
Score = 28.1 bits (61), Expect = 4.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 101 QAHQLQLCMLIYHQRVLDRVIGQGAGVRAQRGP 133
Q +Q Q+C + H+R + +I + AG++ Q P
Sbjct: 197 QGYQCQVCTCVVHKRCHELIITKCAGLKKQETP 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.142 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,195,010
Number of Sequences: 37866
Number of extensions: 483790
Number of successful extensions: 1709
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 62
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.