Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291454 Sequence: fasta or formatted (290aa) NCBI GI: 239748970
Description:

PREDICTED: hypothetical protein XP_002346871

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         27           2
 C cysteine            2.4          7           1
 D aspartate           3.1          9           1
 E glutamate           4.5         13           1
 F phenylalanine       3.1          9           2
 G glycine             5.5         16           2
 H histidine           1.7          5           1
 I isoleucine          4.5         13           1
 K lysine              6.6         19           2
 L leucine             8.6         25           3
 M methionine          0.3          1           1
 N asparagine          3.8         11           1
 P proline            10.3         30           4
 Q glutamine           5.9         17           1
 R arginine            7.9         23           2
 S serine             10.0         29           2
 T threonine           3.1          9           1
 V valine              5.9         17           3
 W tryptophan          3.1          9           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346871 
LOC100292712          1.000   PREDICTED: hypothetical protein 
LOC100288120          0.997   PREDICTED: hypothetical protein XP_002342713 
C2orf21               0.024   chromosome 2 open reading frame 21 isoform 1 
ZC3H13                0.021   zinc finger CCCH-type containing 13 
ASB10                 0.021   ankyrin repeat and SOCS box-containing 10 isoform 3...
LOC100129890          0.017   PREDICTED: hypothetical protein 
GLI1                  0.016   GLI family zinc finger 1 isoform 2 
GLI1                  0.016   GLI family zinc finger 1 isoform 1 
DAG1                  0.016   dystroglycan 1 preproprotein 
USP31                 0.016   ubiquitin specific peptidase 31 
ATF5                  0.014   activating transcription factor 5 
ZYX                   0.014   zyxin 
ZYX                   0.014   zyxin 
RNPS1                 0.014   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.014   RNA-binding protein S1, serine-rich domain 
LOC100293274          0.014   PREDICTED: similar to hCG1994130 
LOC100290882          0.014   PREDICTED: hypothetical protein XP_002347835 
LOC100288781          0.014   PREDICTED: hypothetical protein XP_002343613 
SRRM2                 0.014   splicing coactivator subunit SRm300 
LOC100129890          0.012   PREDICTED: hypothetical protein 
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.012   PREDICTED: similar to ribonucleic acid binding prote...
LOC100293953          0.012   PREDICTED: hypothetical protein 
LOC100290158          0.012   PREDICTED: hypothetical protein XP_002347492 
LOC100288144          0.012   PREDICTED: hypothetical protein XP_002343302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press