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Search of human proteins with 239749818
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749818 PREDICTED: chromosome 10 open reading frame 105
[Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Ho... 278 1e-75
gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Ho... 278 1e-75
gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Ho... 278 1e-75
gi|46560555 transmembrane protein 132E [Homo sapiens] 30 0.43
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 30 0.74
gi|169161541 PREDICTED: hypothetical protein [Homo sapiens] 30 0.74
gi|169161244 PREDICTED: hypothetical protein [Homo sapiens] 30 0.74
gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precurs... 29 0.97
gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precurs... 29 0.97
gi|169213751 PREDICTED: chromosome 19 open reading frame 67 [Hom... 29 1.3
gi|89057223 PREDICTED: chromosome 19 open reading frame 67 [Homo... 29 1.3
gi|89052437 PREDICTED: chromosome 19 open reading frame 67 [Homo... 29 1.3
gi|26667180 calcium/calmodulin-dependent protein kinase II delta... 29 1.3
gi|156071452 nardilysin isoform b [Homo sapiens] 29 1.3
gi|156071450 nardilysin isoform a [Homo sapiens] 29 1.3
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 28 1.6
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 28 1.6
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ... 28 1.6
gi|119829183 cytochrome P450, family 11, subfamily B, polypeptid... 28 2.2
gi|191252814 RIMS binding protein 3B [Homo sapiens] 28 2.8
gi|191252806 RIMS binding protein 3C [Homo sapiens] 28 2.8
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 2.8
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 2.8
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 2.8
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 28 2.8
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 28 2.8
gi|4507609 tumor necrosis factor (ligand) superfamily, member 9 ... 28 2.8
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 28 2.8
gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Ho... 28 2.8
gi|33563376 TBC1 domain family, member 16 [Homo sapiens] 27 3.7
>gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 278 bits (710), Expect = 1e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
Query: 121 NRSHCDYMESTKM 133
NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133
>gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 278 bits (710), Expect = 1e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
Query: 121 NRSHCDYMESTKM 133
NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133
>gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 278 bits (710), Expect = 1e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61 PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
Query: 121 NRSHCDYMESTKM 133
NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 30.4 bits (67), Expect = 0.43
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 58 LCKPAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVP 111
LC A L + R+H P PG + P L + RL RL+ R RP P
Sbjct: 14 LCLSALLAHASGRSHPASPSPPGPQASPVLPVSYRLSHTRLAFF-LREARPPSP 66
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 29.6 bits (65), Expect = 0.74
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 23 PVTPGTLAEATDPLP-MLIALACIFLLLATCLLFMTLCKPAALDPS-----RRRAHECMP 76
P TPG L+ T PLP +A + LL L T PAA S R A +
Sbjct: 750 PSTPGVLSNCTSPLPEAFLANLFVHPLLPPRDLSPTAPCPAAATASLLASISRIAQDPSS 809
Query: 77 HHPGSPSEPQLRLWKRLGSLRLSLH 101
PG +L L S +SLH
Sbjct: 810 VSPGGTGGQKLAQLPELASAEMSLH 834
>gi|169161541 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 29.6 bits (65), Expect = 0.74
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 6 PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
P L A+S LA L PV PGTL + TD PLP
Sbjct: 69 PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101
>gi|169161244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 29.6 bits (65), Expect = 0.74
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 6 PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
P L A+S LA L PV PGTL + TD PLP
Sbjct: 69 PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101
>gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precursor
[Homo sapiens]
Length = 963
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 6 PSLASSPAISPLAFLSAPVTPGTLAEATDP--------LPMLIALACIFLLLATCLLFMT 57
P L+SS + L S P + +P L ++IALACI L CLLF
Sbjct: 644 PPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFV 703
Query: 58 LCK 60
K
Sbjct: 704 CTK 706
>gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 6 PSLASSPAISPLAFLSAPVTPGTLAEATDP--------LPMLIALACIFLLLATCLLFMT 57
P L+SS + L S P + +P L ++IALACI L CLLF
Sbjct: 644 PPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFV 703
Query: 58 LCK 60
K
Sbjct: 704 CTK 706
>gi|169213751 PREDICTED: chromosome 19 open reading frame 67 [Homo
sapiens]
Length = 368
Score = 28.9 bits (63), Expect = 1.3
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
P DPSR P PG+PSEP RL R S S +P VPR PGP
Sbjct: 29 PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78
Query: 120 DNRSHCDYMES 130
R D + S
Sbjct: 79 PPRLSLDTLFS 89
>gi|89057223 PREDICTED: chromosome 19 open reading frame 67 [Homo
sapiens]
Length = 368
Score = 28.9 bits (63), Expect = 1.3
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
P DPSR P PG+PSEP RL R S S +P VPR PGP
Sbjct: 29 PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78
Query: 120 DNRSHCDYMES 130
R D + S
Sbjct: 79 PPRLSLDTLFS 89
>gi|89052437 PREDICTED: chromosome 19 open reading frame 67 [Homo
sapiens]
Length = 368
Score = 28.9 bits (63), Expect = 1.3
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 61 PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
P DPSR P PG+PSEP RL R S S +P VPR PGP
Sbjct: 29 PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78
Query: 120 DNRSHCDYMES 130
R D + S
Sbjct: 79 PPRLSLDTLFS 89
>gi|26667180 calcium/calmodulin-dependent protein kinase II delta
isoform 3 [Homo sapiens]
Length = 499
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 79 PGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQP--LPGPEDNRS 123
P + + R+W R ++H R G PTVP +P +P ++N S
Sbjct: 444 PKTMQSEETRVWHRRDGKWQNVHFHRSGSPTVPIKPPCIPNGKENFS 490
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 28.9 bits (63), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 94 GSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMEST 131
GS LS+H +G+ + P ED+ S C+ M+ T
Sbjct: 1079 GSKMLSVHVVGYGKYELEEDGTPSSEDSNSSCEVMQLT 1116
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 28.9 bits (63), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 94 GSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMEST 131
GS LS+H +G+ + P ED+ S C+ M+ T
Sbjct: 1147 GSKMLSVHVVGYGKYELEEDGTPSSEDSNSSCEVMQLT 1184
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 22/81 (27%)
Query: 8 LASSPAISP---LAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAAL 64
LA++ + +P L P +P + +TDP PML PA
Sbjct: 1073 LATAESAAPHGSLGHAGLPQSPAKMGNSTDPGPMLAI-------------------PAMA 1113
Query: 65 DPSRRRAHECMPHHPGSPSEP 85
+ A P++PG+PS P
Sbjct: 1114 TNPQNAASRRTPNNPGNPSNP 1134
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 22/81 (27%)
Query: 8 LASSPAISP---LAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAAL 64
LA++ + +P L P +P + +TDP PML PA
Sbjct: 1074 LATAESAAPHGSLGHAGLPQSPAKMGNSTDPGPMLAI-------------------PAMA 1114
Query: 65 DPSRRRAHECMPHHPGSPSEP 85
+ A P++PG+PS P
Sbjct: 1115 TNPQNAASRRTPNNPGNPSNP 1135
>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
sapiens]
Length = 302
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 1 MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
M++ GP+ A+ P P+ AP + + L +L+ L LLL ++ ++ +
Sbjct: 39 MASSGPTWATGPLAVPIP---APAPAALIGGSQKVLVILVGL----LLLGIDIVILSRER 91
Query: 61 PAALDPSRRRAHECMPH------HPGSPSEPQLRLWKRLG 94
+ P+ +P PG+PS LW++ G
Sbjct: 92 LSKAPPTPGALSSPLPQLLLAEQEPGTPSSTAQGLWEKTG 131
>gi|119829183 cytochrome P450, family 11, subfamily B, polypeptide 2
precursor [Homo sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 62 AALDPSRRRAHECMPHHPGSPSEPQLRLWKRLG--SLRLSLHSFRHGRPTVPRQPLPGP 118
AA P E MP HPG+ L++W+ G L L +H + R L GP
Sbjct: 28 AARAPRTVLPFEAMPQHPGNRWLRLLQIWREQGYEHLHLEMHQTFQELGPIFRYNLGGP 86
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 1 MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
MS G SL S PA P F P TP DP + C ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219
Query: 58 LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
L P+A + PH+PGS EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 1 MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
MS G SL S PA P F P TP DP + C ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219
Query: 58 LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
L P+A + PH+PGS EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241
>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 27.7 bits (60), Expect = 2.8
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 69 RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
RRA C PH GS + L R S LS H P P PG R H + +
Sbjct: 83 RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138
Query: 129 E 129
E
Sbjct: 139 E 139
>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 27.7 bits (60), Expect = 2.8
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 69 RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
RRA C PH GS + L R S LS H P P PG R H + +
Sbjct: 83 RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138
Query: 129 E 129
E
Sbjct: 139 E 139
>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 27.7 bits (60), Expect = 2.8
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 69 RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
RRA C PH GS + L R S LS H P P PG R H + +
Sbjct: 83 RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138
Query: 129 E 129
E
Sbjct: 139 E 139
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 27.7 bits (60), Expect = 2.8
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 23 PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHP--- 79
P TPGT +E P L+A + + L P L S H + H
Sbjct: 683 PTTPGT-SEGAPGRPQLLAPLSFQNPVYQMAAGLPL-SPRGLGDSGSEGHSSLSSHSNSE 740
Query: 80 --------GSPSEPQLRLWKRLGSLRLSLHSF--RHGRPTVPRQPLPGPE 119
GS S L +R G L S + G+PTVPRQ GP+
Sbjct: 741 ELAAAAKLGSFSTAAEELARRPGELARRQMSLTEKGGQPTVPRQNSAGPQ 790
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 27.7 bits (60), Expect = 2.8
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 23 PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHP--- 79
P TPGT +E P L+A + + L P L S H + H
Sbjct: 779 PTTPGT-SEGAPGRPQLLAPLSFQNPVYQMAAGLPL-SPRGLGDSGSEGHSSLSSHSNSE 836
Query: 80 --------GSPSEPQLRLWKRLGSLRLSLHSF--RHGRPTVPRQPLPGPE 119
GS S L +R G L S + G+PTVPRQ GP+
Sbjct: 837 ELAAAAKLGSFSTAAEELARRPGELARRQMSLTEKGGQPTVPRQNSAGPQ 886
>gi|4507609 tumor necrosis factor (ligand) superfamily, member 9
[Homo sapiens]
Length = 254
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 9 ASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSR 68
AS ++ P AP P A A LP + + LLL + L P A+ +R
Sbjct: 4 ASDASLDP----EAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGAR 59
Query: 69 RRAHECMPHHPGSPSEPQLR 88
PGS + P+LR
Sbjct: 60 A--------SPGSAASPRLR 71
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 1 MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
MS G SL S PA P F P TP DP + C ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219
Query: 58 LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
L P+A + PH+PGS EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241
>gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Homo
sapiens]
Length = 928
Score = 27.7 bits (60), Expect = 2.8
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 8 LASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK---PAAL 64
L S + PLA + P+T GT+ + T P +L A C CK P +
Sbjct: 520 LPSLMVVMPLAQIKQPMTLGTITKRTGP----------YLFGAGCFSIKAPCKVKPPPQI 569
Query: 65 DPSRRRAHE 73
PS+ E
Sbjct: 570 SPSKSMGGE 578
>gi|33563376 TBC1 domain family, member 16 [Homo sapiens]
Length = 767
Score = 27.3 bits (59), Expect = 3.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 58 LCKPAALDPSRRRAHECMPHHPGSPSEP 85
LC D A EC HHPGS S P
Sbjct: 709 LCGSGMWDSGSMPAVECTGHHPGSESCP 736
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,823,793
Number of Sequences: 37866
Number of extensions: 351678
Number of successful extensions: 1320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 74
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.