Guide to the Human Genome
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Name: CAMK2D Sequence: fasta or formatted (499aa) NCBI GI: 26667180
Description:

calcium/calmodulin-dependent protein kinase II delta isoform 3

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [492aa] calcium/calmodulin-dependent protein kinase II delta isoform 5
alt prot [489aa] calcium/calmodulin-dependent protein kinase II delta isoform 4
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         38           2
 C cysteine            2.2         11           1
 D aspartate           5.4         27           2
 E glutamate           7.2         36           2
 F phenylalanine       4.0         20           1
 G glycine             6.2         31           2
 H histidine           3.6         18           1
 I isoleucine          6.6         33           2
 K lysine              7.2         36           2
 L leucine             8.4         42           3
 M methionine          2.2         11           2
 N asparagine          4.0         20           2
 P proline             5.0         25           2
 Q glutamine           3.8         19           2
 R arginine            5.0         25           2
 S serine              5.6         28           2
 T threonine           6.0         30           3
 V valine              5.2         26           2
 W tryptophan          1.6          8           1
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium/calmodulin-dependent protein kinase II delta... 
CAMK2D                0.952   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.952   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.950   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.944   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.943   calcium/calmodulin-dependent protein kinase II delt...
CAMK2B                0.860   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.846   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.844   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.842   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.841   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2A                0.839   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2B                0.836   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.835   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2A                0.831   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2G                0.827   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.827   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.818   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.803   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.769   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.586   calcium/calmodulin-dependent protein kinase II beta ...
CASK                  0.261   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.261   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.261   calcium/calmodulin-dependent serine protein kinase ...
CAMK4                 0.224   calcium/calmodulin-dependent protein kinase IV 
CAMK1D                0.211   calcium/calmodulin-dependent protein kinase ID isofo...
CAMK1D                0.211   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1                 0.203   calcium/calmodulin-dependent protein kinase I 
CAMK1G                0.201   calcium/calmodulin-dependent protein kinase IG [Homo...
PNCK                  0.199   pregnancy upregulated non-ubiquitously expressed Ca...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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