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Search of human proteins with 239749544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749544 PREDICTED: hypothetical protein XP_002347074 [Homo
sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755022 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|239749544 PREDICTED: hypothetical protein XP_002347074 [Homo ... 175 8e-45
gi|239743696 PREDICTED: hypothetical protein XP_002342937 [Homo ... 175 8e-45
gi|109255245 serine/threonine kinase 17a [Homo sapiens] 30 0.53
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 29 0.69
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 29 0.69
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 29 0.91
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 29 0.91
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 29 0.91
gi|226443152 abhydrolase domain containing 14B [Homo sapiens] 29 0.91
gi|14249382 abhydrolase domain containing 14B [Homo sapiens] 29 0.91
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 28 1.2
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 28 1.2
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 28 1.2
gi|110681708 zinc finger protein 579 [Homo sapiens] 28 1.2
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 27 2.6
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 27 2.6
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 27 3.4
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 27 3.4
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 27 3.4
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 27 3.4
gi|54792138 helicase with zinc finger domain [Homo sapiens] 27 3.4
gi|148529025 pleckstrin homology domain containing, family G (wi... 27 3.4
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens] 27 3.4
gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens] 27 4.5
gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens] 27 4.5
gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens] 27 4.5
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 4.5
>gi|239755022 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 175 bits (443), Expect = 8e-45
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT
Sbjct: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
Query: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
LPGTEFLSGKRGVAERRSEDLIQKMKLVG
Sbjct: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
>gi|239749544 PREDICTED: hypothetical protein XP_002347074 [Homo
sapiens]
Length = 89
Score = 175 bits (443), Expect = 8e-45
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT
Sbjct: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
Query: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
LPGTEFLSGKRGVAERRSEDLIQKMKLVG
Sbjct: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
>gi|239743696 PREDICTED: hypothetical protein XP_002342937 [Homo
sapiens]
Length = 89
Score = 175 bits (443), Expect = 8e-45
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT
Sbjct: 1 MASDLLAENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLT 60
Query: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
LPGTEFLSGKRGVAERRSEDLIQKMKLVG
Sbjct: 61 LPGTEFLSGKRGVAERRSEDLIQKMKLVG 89
>gi|109255245 serine/threonine kinase 17a [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 13 PSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFL-TVPLQIGRRLTLPGTEFLSGKR 71
P G L P R PPPP + ++ R + T P Q G L PG E GK
Sbjct: 14 PGATSGSGRAGRGLSGPCRPPPPPQARGLLTEIRAVVRTEPFQDGYSL-CPGRELGRGKF 72
Query: 72 GVAER 76
V +
Sbjct: 73 AVVRK 77
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 29.3 bits (64), Expect = 0.69
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 19 PGSFALALDAPLRHPPPPSPSRISSKS 45
P S + AL A + PPPP P R+SS S
Sbjct: 772 PRSQSFALRARRKGPPPPPPKRLSSVS 798
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 29.3 bits (64), Expect = 0.69
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 19 PGSFALALDAPLRHPPPPSPSRISSKS 45
P S + AL A + PPPP P R+SS S
Sbjct: 854 PRSQSFALRARRKGPPPPPPKRLSSVS 880
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 PSLEMAPGSFALALDAP-LRHPPPPSPSRISSKSREFLTVPLQIGRRL 59
P L PG+ ALA+ P L PP P +R SS E LT +G R+
Sbjct: 168 PPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRV 215
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 PSLEMAPGSFALALDAP-LRHPPPPSPSRISSKSREFLTVPLQIGRRL 59
P L PG+ ALA+ P L PP P +R SS E LT +G R+
Sbjct: 168 PPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRV 215
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 PSLEMAPGSFALALDAP-LRHPPPPSPSRISSKSREFLTVPLQIGRRL 59
P L PG+ ALA+ P L PP P +R SS E LT +G R+
Sbjct: 168 PPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRV 215
>gi|226443152 abhydrolase domain containing 14B [Homo sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 10 AKLPSLEMAPGSFALALDAPLRHPPPP--SPSRISSKSREFLTVP 52
A P E+APGSF A+ L PP SPS S FLT P
Sbjct: 80 APAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAP 124
>gi|14249382 abhydrolase domain containing 14B [Homo sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 10 AKLPSLEMAPGSFALALDAPLRHPPPP--SPSRISSKSREFLTVP 52
A P E+APGSF A+ L PP SPS S FLT P
Sbjct: 80 APAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAP 124
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 27 DAPLRHPPPPSPSRISSKS 45
++P+ HPP PSPS SS++
Sbjct: 468 NSPISHPPSPSPSAYSSRT 486
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 AKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLPGT 64
+KL + PGSF + D R PPP +PS + SR+ + +R PG+
Sbjct: 2754 SKLSGPILGPGSFP-SDDRLSRPPPPATPSSMDVNSRQLVGGSQAFYQRAPYPGS 2807
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 14 SLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLPGTEFLSGKRGV 73
S+++ PG +L++ AP R PPP S + + SRE P Q + + G F K+ V
Sbjct: 2095 SIQLPPGQ-SLSVGAPRRIPPPGSQPPVLNTSRE----PSQ----MEMKGFHFADSKQNV 2145
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 15 LEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPL-QIGRRLTLPGT 64
LE A AL AP PPPP P + + + E L +PL I PGT
Sbjct: 467 LERAAALQALQAQAPTSPPPPPPPLK-AEQEEEGLPLPLANIKEEPPSPGT 516
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 27 DAPLRHPPPPSPSRISSKSREFLTVPLQIG 56
+ PL PPPP+P + + SR L +G
Sbjct: 27 EGPLHAPPPPAPHQPPAASRSMFVALLGLG 56
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 16 EMAPGSFALALDAPLRHPPPP-SPSRISSKSREFLTVPLQIGRRLTLPGT 64
E P F +A+ P PPPP +P R+ PL++ RRL P T
Sbjct: 501 EAEPCPFRVAIYVPGEKPPPPWAPPRL----------PLRLQRRLKRPET 540
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 12 LPSLEMAPGSFALALDAPLRHPPPPSPSRIS 42
+P + PG L + P PPPP P +S
Sbjct: 200 MPGPRLGPGKPGLKFNGPPPPPPPPPPHLLS 230
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 12 LPSLEMAPGSFALALDAPLRHPPPPSPSRIS 42
+P + PG L + P PPPP P +S
Sbjct: 200 MPGPRLGPGKPGLKFNGPPPPPPPPPPHLLS 230
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 12 LPSLEMAPGSFALALDAPLRHPPPPSPSRIS 42
+P + PG L + P PPPP P +S
Sbjct: 200 MPGPRLGPGKPGLKFNGPPPPPPPPPPHLLS 230
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 18 APGSFALALDAPLRHPPPPSPSRISSKSRE--------FLTVPLQIGRRLTLPGTEFLSG 69
APGS + AP PPPP P S+S P +GRR + G +G
Sbjct: 56 APGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
Query: 70 K 70
+
Sbjct: 116 R 116
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 18 APGSFALALDAPLRHPPPPSPSRISSKSRE--------FLTVPLQIGRRLTLPGTEFLSG 69
APGS + AP PPPP P S+S P +GRR + G +G
Sbjct: 56 APGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
Query: 70 K 70
+
Sbjct: 116 R 116
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 19 PGSFALALDAPLRHPPPPSPSRISSKSREFLTVPL 53
P + L L P HPP P + + + R + T PL
Sbjct: 45 PARWLLLLGGPTAHPPLPKGNALLLQGRGYTTHPL 79
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 26.9 bits (58), Expect = 3.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 1 MASDLLAENAKLPSLEMAPG-----SFALALDAPLRHPPPPSPSRISSKSREFLTVPLQI 55
M + +AE+A S + + G S+A AL AP + PPP ++ SS PL +
Sbjct: 1870 MPNKQIAESANSSSPQSSAGGKPAMSYASALRAPPKPRPPPEQAKKSSD-------PLSL 1922
Query: 56 GRRLTLPGTEFLSG 69
+ L+L + +G
Sbjct: 1923 FQELSLGSSSGSNG 1936
>gi|148529025 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4B [Homo sapiens]
Length = 1271
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 7 AENAKLPSLEMAPGSFALALDAPLRHPPPPS-PSRISSKSREFLTVPLQIGRRLTLPGTE 65
A + LP L +P A +A RH PPS PS S PL LPG
Sbjct: 606 APDPSLPPLAQSPPKHERAQEAMRRHQKPPSFPSTDSGGGAWEPAQPLS-----GLPGRA 660
Query: 66 FLSGKRG 72
L G+ G
Sbjct: 661 LLCGQDG 667
>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
Length = 775
Score = 26.9 bits (58), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 14 SLEMAPGSFALALDAPLRHPPPP-------SPSRISSKSREFLTVPLQIGRRL 59
SL G F + D P R PPPP S S +SS S + ++ +RL
Sbjct: 106 SLTSTKGEFGVEDDRPARGPPPPKSEEASWSESGVSSSSGDGPFAGGEVDKRL 158
>gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 6 LAENAKLPS-LEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLPGT 64
L E+ K+ S + PG + HP P PS + + + ++ + G L P +
Sbjct: 217 LTESMKMESGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPAS 276
Query: 65 EFLSGKRGVAERRSE 79
F +R A SE
Sbjct: 277 SFTPKQRSKARSCSE 291
>gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 6 LAENAKLPS-LEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLPGT 64
L E+ K+ S + PG + HP P PS + + + ++ + G L P +
Sbjct: 217 LTESMKMESGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPAS 276
Query: 65 EFLSGKRGVAERRSE 79
F +R A SE
Sbjct: 277 SFTPKQRSKARSCSE 291
>gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens]
Length = 466
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 6 LAENAKLPS-LEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLPGT 64
L E+ K+ S + PG + HP P PS + + + ++ + G L P +
Sbjct: 217 LTESMKMESGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPAS 276
Query: 65 EFLSGKRGVAERRSE 79
F +R A SE
Sbjct: 277 SFTPKQRSKARSCSE 291
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 8 ENAKLPSLEMAPGSFALALDAPLRHPPPPSPSRISSKSREFLTVPLQIGRRLTLP 62
+NA P P S LA PL P P +P + + T P Q +T P
Sbjct: 321 DNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTP 375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,983,598
Number of Sequences: 37866
Number of extensions: 193798
Number of successful extensions: 1570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1516
Number of HSP's gapped (non-prelim): 85
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.