Guide to the Human Genome
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Name: LOC100292749 Sequence: fasta or formatted (89aa) NCBI GI: 239755022
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0          8           1
 C cysteine            0.0          0           0
 D aspartate           3.4          3           1
 E glutamate           6.7          6           1
 F phenylalanine       3.4          3           1
 G glycine             6.7          6           1
 H histidine           1.1          1           1
 I isoleucine          3.4          3           1
 K lysine              5.6          5           1
 L leucine            15.7         14           2
 M methionine          3.4          3           1
 N asparagine          1.1          1           1
 P proline            11.2         10           4
 Q glutamine           2.2          2           1
 R arginine            9.0          8           2
 S serine             11.2         10           2
 T threonine           3.4          3           1
 V valine              3.4          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290573          1.000   PREDICTED: hypothetical protein XP_002347074 
LOC100289571          1.000   PREDICTED: hypothetical protein XP_002342937 
STK17A                0.033   serine/threonine kinase 17a 
CASKIN2               0.027   cask-interacting protein 2 isoform b 
CASKIN2               0.027   cask-interacting protein 2 isoform a 
LOC284801             0.027   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.027   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.027   PREDICTED: hypothetical protein LOC284801 
ABHD14B               0.027   abhydrolase domain containing 14B 
ABHD14B               0.027   abhydrolase domain containing 14B 
AHRR                  0.020   arylhydrocarbon receptor repressor 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
BAT2L                 0.020   HLA-B associated transcript 2-like 
ZNF579                0.020   zinc finger protein 579 
TNFSF11               0.013   tumor necrosis factor ligand superfamily, member 11 i...
PPP1R15A              0.013   protein phosphatase 1, regulatory subunit 15A [Homo...
SMN2                  0.013   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.013   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.013   survival of motor neuron 1, telomeric isoform d [Homo...
LOC645321             0.013   PREDICTED: hypothetical protein 
LOC645321             0.013   PREDICTED: hypothetical protein 
LOC100289284          0.013   PREDICTED: hypothetical protein XP_002342335 
HELZ                  0.013   helicase with zinc finger domain 
PLEKHG4B              0.013   pleckstrin homology domain containing, family G (wi...
GCC1                  0.013   Golgi coiled-coil protein 1 
GATA2                 0.013   GATA binding protein 2 isoform 1 
GATA2                 0.013   GATA binding protein 2 isoform 1 
GATA2                 0.013   GATA binding protein 2 isoform 2 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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