BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo sapiens] (104 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo ... 227 2e-60 gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo ... 227 2e-60 gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.11 gi|164663768 hypothetical protein LOC339263 [Homo sapiens] 32 0.14 gi|7657214 hormonally upregulated Neu-associated kinase [Homo sa... 30 0.41 gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 30 0.53 gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 30 0.53 gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 30 0.53 gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 30 0.53 gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 30 0.53 gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa... 29 0.69 gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s... 29 0.69 gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s... 29 0.69 gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s... 29 0.69 gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 29 0.69 gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ... 29 0.69 gi|58761548 tau tubulin kinase 1 [Homo sapiens] 28 1.2 gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5 gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 28 1.5 gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 28 1.5 gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 28 2.0 gi|59806357 submaxillary gland androgen regulated protein 3 homo... 28 2.0 gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 28 2.0 gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 27 2.6 gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 27 2.6 gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 27 2.6 gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 27 3.4 gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 27 3.4 gi|23397518 hypothetical protein LOC169693 [Homo sapiens] 27 3.4 gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens] 27 3.4 >gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo sapiens] Length = 104 Score = 227 bits (578), Expect = 2e-60 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP Sbjct: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60 Query: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY Sbjct: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104 >gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo sapiens] Length = 104 Score = 227 bits (578), Expect = 2e-60 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP Sbjct: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60 Query: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY Sbjct: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104 >gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] Length = 904 Score = 32.0 bits (71), Expect = 0.11 Identities = 14/27 (51%), Positives = 14/27 (51%) Query: 46 PCPVSINHRRRNSCPPHRERTARPPPR 72 P P RRR PP R RT PPPR Sbjct: 561 PSPAPPPRRRRTPTPPPRRRTPSPPPR 587 Score = 26.9 bits (58), Expect = 3.4 Identities = 12/29 (41%), Positives = 13/29 (44%) Query: 44 PHPCPVSINHRRRNSCPPHRERTARPPPR 72 P P P + PP R RT PPPR Sbjct: 550 PSPPPTRRRRSPSPAPPPRRRRTPTPPPR 578 Score = 25.8 bits (55), Expect = 7.7 Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 54 RRRNSCPPHRERTARPPP 71 RR + PP + RTA PPP Sbjct: 602 RRYSPSPPPKRRTASPPP 619 >gi|164663768 hypothetical protein LOC339263 [Homo sapiens] Length = 221 Score = 31.6 bits (70), Expect = 0.14 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPRHARTRLQGASLR 84 P P F S + +P PCPV + + +S P R R PP R A+ L +LR Sbjct: 26 PYAPWSFTPSSRAPTAWVRP-PCPVWASRLQEHSPEPRRARA--PPTRRAQAALYAPALR 82 Query: 85 L 85 L Sbjct: 83 L 83 >gi|7657214 hormonally upregulated Neu-associated kinase [Homo sapiens] Length = 714 Score = 30.0 bits (66), Expect = 0.41 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 SPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPP 71 SP L S++ L HP VS H +NS PP E PPP Sbjct: 600 SPGLPSGSMSPLHTPLHPTLVSFAHEDKNS-PPKEEGLCCPPP 641 >gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] Length = 844 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75 NH R+N CP H+ R+ P H R Sbjct: 433 NHLRQNMCPAHQNRSLANGPSHPR 456 >gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] Length = 852 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75 NH R+N CP H+ R+ P H R Sbjct: 441 NHLRQNMCPAHQNRSLANGPSHPR 464 >gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] Length = 858 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75 NH R+N CP H+ R+ P H R Sbjct: 447 NHLRQNMCPAHQNRSLANGPSHPR 470 >gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] Length = 850 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75 NH R+N CP H+ R+ P H R Sbjct: 439 NHLRQNMCPAHQNRSLANGPSHPR 462 >gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] Length = 1445 Score = 29.6 bits (65), Expect = 0.53 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 32 LCCSSVAVLFDKPHPCPVS---INHRRRNSCPPHRERTARPPPRHARTRLQGAS 82 L CS A K H CPV I R + PP RE + P H R R+ S Sbjct: 1375 LACSPKAT--PKGHHCPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTS 1426 >gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sapiens] Length = 630 Score = 29.3 bits (64), Expect = 0.69 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69 PL PS P +C SS VL+++P P P R + PP R ARP Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423 >gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo sapiens] Length = 618 Score = 29.3 bits (64), Expect = 0.69 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69 PL PS P +C SS VL+++P P P R + PP R ARP Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411 >gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo sapiens] Length = 649 Score = 29.3 bits (64), Expect = 0.69 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69 PL PS P +C SS VL+++P P P R + PP R ARP Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411 >gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo sapiens] Length = 661 Score = 29.3 bits (64), Expect = 0.69 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69 PL PS P +C SS VL+++P P P R + PP R ARP Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423 >gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] Length = 1316 Score = 29.3 bits (64), Expect = 0.69 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 53 HRRRNSCPPHRERTARPPPRH 73 HRRR +CP R+R R P H Sbjct: 978 HRRRRTCPRERDRQDRHAPEH 998 >gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Homo sapiens] Length = 507 Score = 29.3 bits (64), Expect = 0.69 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 56 RNSCPPHRERTARP--PPRHARTRLQGASL-RLGKGPRFDQESQGEWRKEGY 104 R C E ARP PP RL+ R+G+ R D E++ W +EG+ Sbjct: 47 REHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGF 98 >gi|58761548 tau tubulin kinase 1 [Homo sapiens] Length = 1321 Score = 28.5 bits (62), Expect = 1.2 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%) Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR---HARTRLQGA 81 P SP L S+ A P S++ RR + P H+ R PPPR AR + G Sbjct: 1228 PAPRSPRLPASTSAARNASASPRSQSLS-RRESPSPSHQARPGVPPPRGVPPARAQPDGT 1286 Query: 82 SLRLG--KGPRFDQESQ 96 G KGPR ++Q Sbjct: 1287 PSPGGSKKGPRGKLQAQ 1303 >gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] Length = 146 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85 C HR R+A P RTR+ GAS RL Sbjct: 109 CWGHRRRSAPEPVPAVRTRVHGASRRL 135 >gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo sapiens] Length = 159 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85 C HR R+A P RTR+ GAS RL Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148 >gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo sapiens] Length = 159 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85 C HR R+A P RTR+ GAS RL Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148 >gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo sapiens] Length = 316 Score = 27.7 bits (60), Expect = 2.0 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 17/74 (22%) Query: 11 PHELTTRAYHFLLLPLKPS-----PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRER 65 PH+ T+R LL PS P C S VL P P PP Sbjct: 201 PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPP------------APPGPNA 248 Query: 66 TARPPPRHARTRLQ 79 A PP R R RLQ Sbjct: 249 AAHPPLRPPRARLQ 262 >gi|59806357 submaxillary gland androgen regulated protein 3 homolog A precursor [Homo sapiens] Length = 134 Score = 27.7 bits (60), Expect = 2.0 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 2/71 (2%) Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTA--RPPPRHARTRLQGAS 82 PL P P C PHP P PP+ PPP + R+Q S Sbjct: 34 PLAPPPPPCFPFGTGFVPPPHPPPYGPGRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHS 93 Query: 83 LRLGKGPRFDQ 93 L GP + Q Sbjct: 94 LPPPYGPGYPQ 104 >gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] Length = 880 Score = 27.7 bits (60), Expect = 2.0 Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 9 REPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTAR 68 R L+ + H +P + S+V+ + P P P+ N + +C RT R Sbjct: 704 RTKASLSAKGTHMRKVPPQGGQDCSASTVSASPEAPTPSPLDPNSDKAKACLSKGRRTLR 763 Query: 69 PPPR 72 P R Sbjct: 764 KPKR 767 >gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens] Length = 1758 Score = 27.3 bits (59), Expect = 2.6 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 50 SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102 S N+R R+ S HR R+ PP R +R + G+ P QGE +E Sbjct: 707 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 760 >gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens] Length = 1792 Score = 27.3 bits (59), Expect = 2.6 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 50 SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102 S N+R R+ S HR R+ PP R +R + G+ P QGE +E Sbjct: 741 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 794 >gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo sapiens] Length = 1781 Score = 27.3 bits (59), Expect = 2.6 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Query: 27 KPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR 72 +PSPF +SV F P RN P +RT PPPR Sbjct: 1431 QPSPFQLSASVPKSFFSKQPV--------RNKHPTGWKRTEEPPPR 1468 >gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo sapiens] Length = 144 Score = 26.9 bits (58), Expect = 3.4 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 22 LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77 LLLP P S V++ P P ++ RR PP R A PPP +R R Sbjct: 53 LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108 Query: 78 LQGASL 83 GA L Sbjct: 109 SSGALL 114 >gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo sapiens] Length = 144 Score = 26.9 bits (58), Expect = 3.4 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 22 LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77 LLLP P S V++ P P ++ RR PP R A PPP +R R Sbjct: 53 LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108 Query: 78 LQGASL 83 GA L Sbjct: 109 SSGALL 114 >gi|23397518 hypothetical protein LOC169693 [Homo sapiens] Length = 170 Score = 26.9 bits (58), Expect = 3.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 56 RNSCPPHRERTARPPPRHARTRLQ 79 + SCP RE + PPP + T L+ Sbjct: 109 KQSCPAEREASGIPPPLYTETGLE 132 >gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens] Length = 407 Score = 26.9 bits (58), Expect = 3.4 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 44 PHPCPVSINHRRRNSCPPHRERTARPPPRHA 74 P C S +R +SC P +R + PPR A Sbjct: 356 PKSCESSDPEQRNSSCGPPHQRADQRPPRPA 386 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.139 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,450,199 Number of Sequences: 37866 Number of extensions: 287144 Number of successful extensions: 944 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 901 Number of HSP's gapped (non-prelim): 70 length of query: 104 length of database: 18,247,518 effective HSP length: 75 effective length of query: 29 effective length of database: 15,407,568 effective search space: 446819472 effective search space used: 446819472 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.