Guide to the Human Genome
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Search of human proteins with 239749490

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo
sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo ...   227   2e-60
gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo ...   227   2e-60
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         32   0.11 
gi|164663768 hypothetical protein LOC339263 [Homo sapiens]             32   0.14 
gi|7657214 hormonally upregulated Neu-associated kinase [Homo sa...    30   0.41 
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]                       30   0.53 
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]                       30   0.53 
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]                       30   0.53 
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]                       30   0.53 
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]         30   0.53 
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa...    29   0.69 
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s...    29   0.69 
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s...    29   0.69 
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s...    29   0.69 
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]             29   0.69 
gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ...    29   0.69 
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        28   1.2  
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]            28   1.5  
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ...    28   1.5  
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ...    28   1.5  
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ...    28   2.0  
gi|59806357 submaxillary gland androgen regulated protein 3 homo...    28   2.0  
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]             28   2.0  
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    27   2.6  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    27   2.6  
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho...    27   2.6  
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ...    27   3.4  
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ...    27   3.4  
gi|23397518 hypothetical protein LOC169693 [Homo sapiens]              27   3.4  
gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens]          27   3.4  

>gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo
           sapiens]
          Length = 104

 Score =  227 bits (578), Expect = 2e-60
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
           MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP
Sbjct: 1   MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60

Query: 61  PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
           PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY
Sbjct: 61  PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104


>gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo
           sapiens]
          Length = 104

 Score =  227 bits (578), Expect = 2e-60
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
           MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP
Sbjct: 1   MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60

Query: 61  PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
           PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY
Sbjct: 61  PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 14/27 (51%), Positives = 14/27 (51%)

Query: 46  PCPVSINHRRRNSCPPHRERTARPPPR 72
           P P     RRR   PP R RT  PPPR
Sbjct: 561 PSPAPPPRRRRTPTPPPRRRTPSPPPR 587



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 44  PHPCPVSINHRRRNSCPPHRERTARPPPR 72
           P P P         + PP R RT  PPPR
Sbjct: 550 PSPPPTRRRRSPSPAPPPRRRRTPTPPPR 578



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 54  RRRNSCPPHRERTARPPP 71
           RR +  PP + RTA PPP
Sbjct: 602 RRYSPSPPPKRRTASPPP 619


>gi|164663768 hypothetical protein LOC339263 [Homo sapiens]
          Length = 221

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPRHARTRLQGASLR 84
          P  P  F   S     + +P PCPV  +  + +S  P R R   PP R A+  L   +LR
Sbjct: 26 PYAPWSFTPSSRAPTAWVRP-PCPVWASRLQEHSPEPRRARA--PPTRRAQAALYAPALR 82

Query: 85 L 85
          L
Sbjct: 83 L 83


>gi|7657214 hormonally upregulated Neu-associated kinase [Homo
           sapiens]
          Length = 714

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 29  SPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPP 71
           SP L   S++ L    HP  VS  H  +NS PP  E    PPP
Sbjct: 600 SPGLPSGSMSPLHTPLHPTLVSFAHEDKNS-PPKEEGLCCPPP 641


>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
          Length = 844

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 52  NHRRRNSCPPHRERTARPPPRHAR 75
           NH R+N CP H+ R+    P H R
Sbjct: 433 NHLRQNMCPAHQNRSLANGPSHPR 456


>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
          Length = 852

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 52  NHRRRNSCPPHRERTARPPPRHAR 75
           NH R+N CP H+ R+    P H R
Sbjct: 441 NHLRQNMCPAHQNRSLANGPSHPR 464


>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
          Length = 858

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 52  NHRRRNSCPPHRERTARPPPRHAR 75
           NH R+N CP H+ R+    P H R
Sbjct: 447 NHLRQNMCPAHQNRSLANGPSHPR 470


>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
          Length = 850

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 52  NHRRRNSCPPHRERTARPPPRHAR 75
           NH R+N CP H+ R+    P H R
Sbjct: 439 NHLRQNMCPAHQNRSLANGPSHPR 462


>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
          Length = 1445

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 32   LCCSSVAVLFDKPHPCPVS---INHRRRNSCPPHRERTARPPPRHARTRLQGAS 82
            L CS  A    K H CPV    I  R  +  PP RE  +   P H R R+   S
Sbjct: 1375 LACSPKAT--PKGHHCPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTS 1426


>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
           sapiens]
          Length = 630

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 25  PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
           PL PS   P +C SS  VL+++P P P       R + PP   R ARP
Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423


>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
           sapiens]
          Length = 618

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 25  PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
           PL PS   P +C SS  VL+++P P P       R + PP   R ARP
Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411


>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
           sapiens]
          Length = 649

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 25  PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
           PL PS   P +C SS  VL+++P P P       R + PP   R ARP
Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411


>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 25  PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
           PL PS   P +C SS  VL+++P P P       R + PP   R ARP
Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423


>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
          Length = 1316

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 53  HRRRNSCPPHRERTARPPPRH 73
           HRRR +CP  R+R  R  P H
Sbjct: 978 HRRRRTCPRERDRQDRHAPEH 998


>gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
           [Homo sapiens]
          Length = 507

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 56  RNSCPPHRERTARP--PPRHARTRLQGASL-RLGKGPRFDQESQGEWRKEGY 104
           R  C    E  ARP  PP     RL+     R+G+  R D E++  W +EG+
Sbjct: 47  REHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGF 98


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 25   PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR---HARTRLQGA 81
            P   SP L  S+ A       P   S++ RR +  P H+ R   PPPR    AR +  G 
Sbjct: 1228 PAPRSPRLPASTSAARNASASPRSQSLS-RRESPSPSHQARPGVPPPRGVPPARAQPDGT 1286

Query: 82   SLRLG--KGPRFDQESQ 96
                G  KGPR   ++Q
Sbjct: 1287 PSPGGSKKGPRGKLQAQ 1303


>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 59  CPPHRERTARPPPRHARTRLQGASLRL 85
           C  HR R+A  P    RTR+ GAS RL
Sbjct: 109 CWGHRRRSAPEPVPAVRTRVHGASRRL 135


>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
           sapiens]
          Length = 159

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 59  CPPHRERTARPPPRHARTRLQGASLRL 85
           C  HR R+A  P    RTR+ GAS RL
Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148


>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
           sapiens]
          Length = 159

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 59  CPPHRERTARPPPRHARTRLQGASLRL 85
           C  HR R+A  P    RTR+ GAS RL
Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148


>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
           sapiens]
          Length = 316

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 17/74 (22%)

Query: 11  PHELTTRAYHFLLLPLKPS-----PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRER 65
           PH+ T+R    LL    PS     P   C S  VL   P P             PP    
Sbjct: 201 PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPP------------APPGPNA 248

Query: 66  TARPPPRHARTRLQ 79
            A PP R  R RLQ
Sbjct: 249 AAHPPLRPPRARLQ 262


>gi|59806357 submaxillary gland androgen regulated protein 3 homolog
           A precursor [Homo sapiens]
          Length = 134

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 25  PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTA--RPPPRHARTRLQGAS 82
           PL P P  C          PHP P           PP+        PPP +   R+Q  S
Sbjct: 34  PLAPPPPPCFPFGTGFVPPPHPPPYGPGRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHS 93

Query: 83  LRLGKGPRFDQ 93
           L    GP + Q
Sbjct: 94  LPPPYGPGYPQ 104


>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
          Length = 880

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/64 (25%), Positives = 26/64 (40%)

Query: 9   REPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTAR 68
           R    L+ +  H   +P +       S+V+   + P P P+  N  +  +C     RT R
Sbjct: 704 RTKASLSAKGTHMRKVPPQGGQDCSASTVSASPEAPTPSPLDPNSDKAKACLSKGRRTLR 763

Query: 69  PPPR 72
            P R
Sbjct: 764 KPKR 767


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
           sapiens]
          Length = 1758

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 50  SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102
           S N+R R+ S   HR R+  PP R   +R +      G+ P      QGE  +E
Sbjct: 707 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 760


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
           sapiens]
          Length = 1792

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 50  SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102
           S N+R R+ S   HR R+  PP R   +R +      G+ P      QGE  +E
Sbjct: 741 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 794


>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
            sapiens]
          Length = 1781

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 27   KPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR 72
            +PSPF   +SV   F    P         RN  P   +RT  PPPR
Sbjct: 1431 QPSPFQLSASVPKSFFSKQPV--------RNKHPTGWKRTEEPPPR 1468


>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
           sapiens]
          Length = 144

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 22  LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77
           LLLP  P      S V++      P P ++  RR    PP     R   A PPP  +R R
Sbjct: 53  LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108

Query: 78  LQGASL 83
             GA L
Sbjct: 109 SSGALL 114


>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
           sapiens]
          Length = 144

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 22  LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77
           LLLP  P      S V++      P P ++  RR    PP     R   A PPP  +R R
Sbjct: 53  LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108

Query: 78  LQGASL 83
             GA L
Sbjct: 109 SSGALL 114


>gi|23397518 hypothetical protein LOC169693 [Homo sapiens]
          Length = 170

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 56  RNSCPPHRERTARPPPRHARTRLQ 79
           + SCP  RE +  PPP +  T L+
Sbjct: 109 KQSCPAEREASGIPPPLYTETGLE 132


>gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens]
          Length = 407

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 44  PHPCPVSINHRRRNSCPPHRERTARPPPRHA 74
           P  C  S   +R +SC P  +R  + PPR A
Sbjct: 356 PKSCESSDPEQRNSSCGPPHQRADQRPPRPA 386


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,450,199
Number of Sequences: 37866
Number of extensions: 287144
Number of successful extensions: 944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 70
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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