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Search of human proteins with 117938272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938272 jumpy isoform 1 [Homo sapiens]
(598 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938272 jumpy isoform 1 [Homo sapiens] 1209 0.0
gi|117938270 jumpy isoform 2 [Homo sapiens] 1184 0.0
gi|117938274 jumpy isoform 3 [Homo sapiens] 1024 0.0
gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens] 49 2e-05
gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens] 49 2e-05
gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens] 49 2e-05
gi|217272865 myotubularin related protein 4 [Homo sapiens] 47 4e-05
gi|4557896 myotubularin [Homo sapiens] 45 2e-04
gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens] 40 0.008
gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens] 40 0.008
gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens] 40 0.008
gi|47716512 mex-3 homolog B [Homo sapiens] 39 0.010
gi|11641239 hypothetical protein LOC53838 [Homo sapiens] 38 0.023
gi|28872761 myotubularin-related protein 1 [Homo sapiens] 37 0.040
gi|134142348 myotubularin related protein 6 [Homo sapiens] 37 0.052
gi|225543474 myotubularin related protein 7 [Homo sapiens] 37 0.068
gi|40807477 retinoic acid induced 1 [Homo sapiens] 35 0.20
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 33 0.57
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 33 0.57
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 33 0.75
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 33 0.98
gi|102469037 jun D proto-oncogene [Homo sapiens] 32 1.7
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 1.7
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 32 2.2
gi|21361759 myotubularin related protein 8 [Homo sapiens] 32 2.2
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 31 2.8
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 31 2.8
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 31 2.8
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 31 2.8
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 2.8
>gi|117938272 jumpy isoform 1 [Homo sapiens]
Length = 598
Score = 1209 bits (3127), Expect = 0.0
Identities = 598/598 (100%), Positives = 598/598 (100%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLA 540
SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLA
Sbjct: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLA 540
Query: 541 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 598
ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 541 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 598
>gi|117938270 jumpy isoform 2 [Homo sapiens]
Length = 650
Score = 1184 bits (3064), Expect = 0.0
Identities = 598/650 (92%), Positives = 598/650 (92%), Gaps = 52/650 (8%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPR-- 538
SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPR
Sbjct: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV 540
Query: 539 --------------------------------------------------LAALSDRETR 548
LAALSDRETR
Sbjct: 541 DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETR 600
Query: 549 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 598
LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 601 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 650
>gi|117938274 jumpy isoform 3 [Homo sapiens]
Length = 538
Score = 1024 bits (2647), Expect = 0.0
Identities = 526/598 (87%), Positives = 529/598 (88%), Gaps = 60/598 (10%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAW
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWLA 480
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLA 540
+ S DR + L E RS+ LA
Sbjct: 481 ALS---------------DR---ETRLQEVRSAF------------------------LA 498
Query: 541 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 598
A S STVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 499 AYS------------------STVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 538
>gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens]
Length = 1161
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens]
Length = 1170
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens]
Length = 1198
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|217272865 myotubularin related protein 4 [Homo sapiens]
Length = 1195
Score = 47.4 bits (111), Expect = 4e-05
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 304 VQQTQNYLKLLLSLVNSDDDSG--LLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPT 361
+Q LK + + N+ D G +LVHC GWDRTP ++L ++ L+ +
Sbjct: 379 LQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVALAKI------LLDPYYRTL 432
Query: 362 EILYLTVAYDWFLFGHMLVDRLSKGEEI 389
E + V DW FGH DR E +
Sbjct: 433 EGFQVLVESDWLDFGHKFGDRCGHQENV 460
>gi|4557896 myotubularin [Homo sapiens]
Length = 603
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 320 SDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHML 379
S S +LVHC GWDRT SL L L + S++ EIL V +W FGH
Sbjct: 365 SSGKSSVLVHCSDGWDRTAQLTSLAMLML---DSFYRSIEGFEIL---VQKEWISFGHKF 418
Query: 380 VDRLSKGEE 388
R+ G++
Sbjct: 419 ASRIGHGDK 427
>gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens]
Length = 643
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 411 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 464
Query: 384 SKGEE 388
G++
Sbjct: 465 GHGDK 469
>gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 339 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 392
Query: 384 SKGEE 388
G++
Sbjct: 393 GHGDK 397
>gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 339 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 392
Query: 384 SKGEE 388
G++
Sbjct: 393 GHGDK 397
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 39.3 bits (90), Expect = 0.010
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSS--SNHSDNFFRMGSSPLEVPKPR 538
S S P S LW++P PS P ++ + R+ SSSS S +D++F G+S R
Sbjct: 256 SGGSGPGS-LWSKPTPSITPTPGRKPFSSYRNDSSSSLGSASTDSYFGGGTSSSAAATQR 314
Query: 539 LAALSDRETRLQEVRSAFL----AAYSSTVGLRAVAPSPSG 575
LA S L + Y+ T G A PSP G
Sbjct: 315 LADYSPPSPALSFAHNGNNNNNGNGYTYTAGGEASVPSPDG 355
>gi|11641239 hypothetical protein LOC53838 [Homo sapiens]
Length = 449
Score = 38.1 bits (87), Expect = 0.023
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 16/177 (9%)
Query: 399 HITSEEFSALKTQRRK-SLPARDGGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGAT 457
H+ S E + T R S PA GG + + + S+T+ S + + ++
Sbjct: 73 HLNSMEVTTEDTSRTDVSEPATSGG-AADGVTSIAPTAVASSTTAASITTAASSMTVASS 131
Query: 458 GSFTYEAVELVPAGAPTQAAWRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSS 517
T + V + APT AA + +SS L LP+ + R+ S+++
Sbjct: 132 APTTAASSTTVASIAPTTAASSMTAASSTPMTL---------ALPAPTSTSTGRTPSTTA 182
Query: 518 SNHSDNFFRMGSSPLEVPKPRLAALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPS 574
+ H + P PR A L+ TR Q V A ++T + PSPS
Sbjct: 183 TGHPSLSTALAQVPKSSALPRTATLATLATRAQTV-----ATTANTSSPMSTRPSPS 234
>gi|28872761 myotubularin-related protein 1 [Homo sapiens]
Length = 665
Score = 37.4 bits (85), Expect = 0.040
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L + ++K E L V +W FGH R+
Sbjct: 432 TSVVVHCSDGWDRTAQLTSLAMLML---DSYYRTIKGFETL---VEKEWISFGHRFALRV 485
Query: 384 SKGEE 388
G +
Sbjct: 486 GHGND 490
>gi|134142348 myotubularin related protein 6 [Homo sapiens]
Length = 621
Score = 37.0 bits (84), Expect = 0.052
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 322 DDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVD 381
+++ +LVHC GWDRT SL L L+ + + + + + DW FGH +
Sbjct: 328 ENASVLVHCSDGWDRTSQVCSLGSL------LLDSYYRTIKGFMVLIEKDWISFGHKFSE 381
Query: 382 R 382
R
Sbjct: 382 R 382
>gi|225543474 myotubularin related protein 7 [Homo sapiens]
Length = 660
Score = 36.6 bits (83), Expect = 0.068
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 320 SDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGH 377
S++ + +LVHC GWDRT S+ L L+ + + + + DW FGH
Sbjct: 328 SEEGASVLVHCSDGWDRTAQVCSVASL------LLDPHYRTLKGFMVLIEKDWISFGH 379
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 35.0 bits (79), Expect = 0.20
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 438 STTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRKSHSSSPQSVLWNRPQPS 497
+ +S + +L + S GS T E G ++ +S + + + R +PS
Sbjct: 1105 AASSPSNPAALPVASDSSPMGSKTKETDSPSTPGKDQRSMILRSRTKTQEIFHSKRRRPS 1164
Query: 498 EDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSP---------LEVPKPRLAA-LSDRET 547
E RLP+ + + +S H F++ SSP VPKP + LSDR
Sbjct: 1165 EGRLPNCRATKKLLDNS-----HLPATFKVSSSPQKEGRVSQRARVPKPGAGSKLSDRPL 1219
Query: 548 RLQEVRSAFLAAYSS---TVGLRAVAPSPSGAIG 578
+ +SAF+A + + LR+ + S S A G
Sbjct: 1220 HALKRKSAFMAPVPTKKRNLVLRSRSSSSSNASG 1253
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 33.5 bits (75), Expect = 0.57
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 AGARAAAAAASAGSSASSGNQPPQELGLGE---LLEEFSRTQYRAKDGSGTGGSKVERI 57
A A AAAAAA+AG SG PP L GE E F+R A G G+G + R+
Sbjct: 6 AAAAAAAAAAAAGGGCGSG-PPPLLLSEGEQQCYSELFARCAGAAGGGPGSGPPEAARV 63
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 33.5 bits (75), Expect = 0.57
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 AGARAAAAAASAGSSASSGNQPPQELGLGE---LLEEFSRTQYRAKDGSGTGGSKVERI 57
A A AAAAAA+AG SG PP L GE E F+R A G G+G + R+
Sbjct: 6 AAAAAAAAAAAAGGGCGSG-PPPLLLSEGEQQCYSELFARCAGAAGGGPGSGPPEAARV 63
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.1 bits (74), Expect = 0.75
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 452 SSPGATGSFTYEAVELVPAGAPTQAAWRK-SHSSSPQSVLWNRPQPSEDRLPSQQGLAEA 510
SSP + G + P G P + +RK +HS SV P+P E R Q G
Sbjct: 649 SSPSSPG-----LGRVAPRGHPRHSHYRKDTHSPLDSSVTKQVPRPPERRRACQDGSVPR 703
Query: 511 RSSSSSSSNHSDNFFRMGSSPLEVPKPRLAALSDRETRLQEVRSAFL----------AAY 560
S SSSS+ + S +P L S T V S F+ A +
Sbjct: 704 YSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSS-ATVTPAVHSDFVSGVSPHNAPSAGW 762
Query: 561 SSTVGLRAVAPSP 573
+ G R +P+P
Sbjct: 763 AGDAGSRTCSPAP 775
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 32.7 bits (73), Expect = 0.98
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 436 RGSTTSLGSDFSLVMESSPGATGS--FTYEAVELVPAGAPTQAAWRK-------SHSSSP 486
R TS S SL +SPG T S FT+E PA P A S +SS
Sbjct: 414 RAKGTSYTSLASLEALASPGPTQSPFFTFELPPQPPAPRPDPPAPAPLAPLEPDSGTSSA 473
Query: 487 QSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLAALSDRE 546
W + + E+ ++ LA R S HS++ +G++PL P +SD +
Sbjct: 474 ADGPWTQ-RGEEEEAEARAKLAPGREPPSPC--HSEDSLGLGAAPLGSEPPLSQLVSDSD 530
Query: 547 TRLQEVRSAFLAA 559
+ L L +
Sbjct: 531 SELDSTERLALGS 543
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 1.7
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 2 AGARAAAAAASAG--SSASSGNQPPQELGLGELLEE---FSRTQYRAKDGSGTGGS 52
AGA AAAAAA+AG S ++G+ PP EL E ++ A G GG+
Sbjct: 155 AGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYAGGAGGAGGA 210
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 1.7
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 431 LRRKDRGSTTSLGSDFSLVMESS-------PGATGSFTYEAVELVPAGAPTQAAWRKSHS 483
+RR+ R S + GS S S P T S + L P+ +P + R S
Sbjct: 345 VRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPP 404
Query: 484 SSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSS-SNHSDNFFRMGSSPLEVPKPRLAAL 542
++P + P P + + ++ + +S + H R SP PKPR L
Sbjct: 405 ATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSP--APKPRKVEL 462
Query: 543 SDRE 546
S+ E
Sbjct: 463 SESE 466
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 GARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVER 56
G AAAAAA+A ++A+ G PP G G + + RA++ +G G + ++R
Sbjct: 39 GNAAAAAAAAAAAAAAPGPTPPAPPGPG--TDAQAAGAERAEEAAGPGAAALQR 90
>gi|21361759 myotubularin related protein 8 [Homo sapiens]
Length = 704
Score = 31.6 bits (70), Expect = 2.2
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 322 DDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVD 381
+ + +LVHC GWDRT S+ A L+ + + L + + +W GH
Sbjct: 330 EKASVLVHCSDGWDRTAQVCSV------ASILLDPFYRTFKGLMILIEKEWISMGHKFSQ 383
Query: 382 R 382
R
Sbjct: 384 R 384
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 31.2 bits (69), Expect = 2.8
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 399 HITSEEFSALKTQRRKSLPARDGGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATG 458
H+T S +R +L GF E+I + +++ T D LV E+ P G
Sbjct: 225 HVTHHPIS----EREVTLRCWALGFYPEEISLTWQREGEDQTQ---DMELV-ETRPSGDG 276
Query: 459 SFTYEAVELVPAGAPTQAAWRKSHS--SSPQSVLWNRPQPS 497
+F A +VP+G + R H P ++ W PQ S
Sbjct: 277 TFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQTS 317
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 31.2 bits (69), Expect = 2.8
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 468 VPAGAPTQAA--------WRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARS------S 513
VP AP+ +A + + SP +L PS +P + L A S S
Sbjct: 792 VPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLS 851
Query: 514 SSSSSNHSDNFFRMGSSPLEVPKPRLAALS 543
SSSSS+ S + F SS P L+A+S
Sbjct: 852 SSSSSSSSSSSFSSSSSSSSPSPPPLSAIS 881
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 31.2 bits (69), Expect = 2.8
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 468 VPAGAPTQAA--------WRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARS------S 513
VP AP+ +A + + SP +L PS +P + L A S S
Sbjct: 993 VPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLS 1052
Query: 514 SSSSSNHSDNFFRMGSSPLEVPKPRLAALS 543
SSSSS+ S + F SS P L+A+S
Sbjct: 1053 SSSSSSSSSSSFSSSSSSSSPSPPPLSAIS 1082
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 31.2 bits (69), Expect = 2.8
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 468 VPAGAPTQAA--------WRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARS------S 513
VP AP+ +A + + SP +L PS +P + L A S S
Sbjct: 993 VPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLS 1052
Query: 514 SSSSSNHSDNFFRMGSSPLEVPKPRLAALS 543
SSSSS+ S + F SS P L+A+S
Sbjct: 1053 SSSSSSSSSSSFSSSSSSSSPSPPPLSAIS 1082
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 463 EAVELVPAGAPTQAAWRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSD 522
EAV PT A ++ SSS S + S S + + SSSSSSS+ S
Sbjct: 2588 EAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Query: 523 NFFRMGSSPLEVPK---PRLAALSDRETR-----LQEVRSAFLAAYSSTVGLRAVAPSPS 574
+ P +PK P+ +R +R + +R + +Y S V R +P PS
Sbjct: 2648 SPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSY-SPVERRRPSPQPS 2706
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,647,197
Number of Sequences: 37866
Number of extensions: 1123981
Number of successful extensions: 4487
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 4377
Number of HSP's gapped (non-prelim): 103
length of query: 598
length of database: 18,247,518
effective HSP length: 108
effective length of query: 490
effective length of database: 14,157,990
effective search space: 6937415100
effective search space used: 6937415100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.