Guide to the Human Genome
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Search of human proteins with 117647226

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117647226 RNA (guanine-9-) methyltransferase domain
containing 1 [Homo sapiens]
         (403 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117647226 RNA (guanine-9-) methyltransferase domain containin...   813   0.0  
gi|117606330 RNA (guanine-9-) methyltransferase domain containin...    96   4e-20
gi|197927265 RNA (guanine-9-) methyltransferase domain containin...    72   7e-13
gi|197927261 RNA (guanine-9-) methyltransferase domain containin...    72   7e-13
gi|22748659 RNA (guanine-9-) methyltransferase domain containing...    72   7e-13
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    37   0.024
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi...    37   0.041
gi|11067749 bromodomain containing protein 3 [Homo sapiens]            35   0.16 
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]                    35   0.16 
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         34   0.21 
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]         34   0.21 
gi|38788260 bromodomain PHD finger transcription factor isoform ...    34   0.21 
gi|38788274 bromodomain PHD finger transcription factor isoform ...    34   0.21 
gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo sa...    34   0.21 
gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo s...    34   0.21 
gi|153791492 eukaryotic translation initiation factor 3, subunit...    34   0.27 
gi|45505178 cancer antigen 1 [Homo sapiens]                            33   0.46 
gi|23503243 Ras association (RalGDS/AF-6) domain family (N-termi...    33   0.60 
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           32   0.78 
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]      32   0.78 
gi|93204861 protein phosphatase 1, regulatory (inhibitor) subuni...    32   0.78 
gi|194294523 intersectin 2 isoform 3 [Homo sapiens]                    32   1.0  
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]         32   1.3  
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]         32   1.3  
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]         32   1.3  
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]         32   1.3  
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]         32   1.3  
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]         32   1.3  
gi|153791218 hypothetical protein LOC115749 [Homo sapiens]             32   1.3  
gi|46852390 coiled-coil domain containing 6 [Homo sapiens]             32   1.3  

>gi|117647226 RNA (guanine-9-) methyltransferase domain containing 1
           [Homo sapiens]
          Length = 403

 Score =  813 bits (2101), Expect = 0.0
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE 60
           MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE
Sbjct: 1   MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE 60

Query: 61  LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL 120
           LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL
Sbjct: 61  LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL 120

Query: 121 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL 180
           MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL
Sbjct: 121 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL 180

Query: 181 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP 240
           RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP
Sbjct: 181 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP 240

Query: 241 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT 300
           FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT
Sbjct: 241 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT 300

Query: 301 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL 360
           FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL
Sbjct: 301 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL 360

Query: 361 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT 403
           LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT
Sbjct: 361 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT 403


>gi|117606330 RNA (guanine-9-) methyltransferase domain containing 3
           [Homo sapiens]
          Length = 316

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 21/237 (8%)

Query: 143 KKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFG 202
           K  R+ +KE + A R E   I          Q +  FLR   ++       K  +A   G
Sbjct: 80  KSKRKQEKERRKANRAENPGIC--------PQHSKRFLRALTKD-------KLLEAKHSG 124

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRY 262
             L  D++  +YM +KEL     Q+    G N++   PF I       D  L+ E V R 
Sbjct: 125 PRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECV-RM 183

Query: 263 QEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTS 322
            + +   LL  TE+    LFP ++++YLT DS + +     +KVY++G  VD+S+Q   +
Sbjct: 184 NDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVT 243

Query: 323 LAKAKRLNLATECLPLDKYLQWEIGNKN-----LTLDQMIRILLCLKNNGNWQEALQ 374
             KA+  ++ T  LP+ +Y+      KN     L ++Q+  IL       NW EAL+
Sbjct: 244 FQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALK 300


>gi|197927265 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 27/248 (10%)

Query: 146 RQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQP- 204
           RQ+KK +K    EE + ++  +  E+ K+K        +R   +     G    +  +  
Sbjct: 43  RQMKKLIKQKQWEEQRELRKQKRKEKRKRKKL------ERQCQMEPNSDGHDRKRVRRDV 96

Query: 205 ------LVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHREL 258
                 L+ D ++++ M  K+++    Q+      NRR + P   Y  +       H   
Sbjct: 97  VHSTLRLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTS-------HGGQ 149

Query: 259 VKRYQEKWDKLLLTSTE-----KSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFV 313
           +K+  ++ DK  +   +     + + +L  K+ +IYLT+DSPN++      K YVIG  V
Sbjct: 150 LKKNMDENDKGWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLV 209

Query: 314 DKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRILLCLKNNGNWQEA- 372
           D +   G +  +A    +    LPL  +++     K L ++ +  I+L      +WQEA 
Sbjct: 210 DHNHHKGLTYKQASDYGINHAQLPLGNFVKMN-SRKVLAVNHVFEIILEYLETRDWQEAF 268

Query: 373 LQFVPKRK 380
              +P+RK
Sbjct: 269 FTILPQRK 276


>gi|197927261 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 27/248 (10%)

Query: 146 RQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQP- 204
           RQ+KK +K    EE + ++  +  E+ K+K        +R   +     G    +  +  
Sbjct: 43  RQMKKLIKQKQWEEQRELRKQKRKEKRKRKKL------ERQCQMEPNSDGHDRKRVRRDV 96

Query: 205 ------LVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHREL 258
                 L+ D ++++ M  K+++    Q+      NRR + P   Y  +       H   
Sbjct: 97  VHSTLRLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTS-------HGGQ 149

Query: 259 VKRYQEKWDKLLLTSTE-----KSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFV 313
           +K+  ++ DK  +   +     + + +L  K+ +IYLT+DSPN++      K YVIG  V
Sbjct: 150 LKKNMDENDKGWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLV 209

Query: 314 DKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRILLCLKNNGNWQEA- 372
           D +   G +  +A    +    LPL  +++     K L ++ +  I+L      +WQEA 
Sbjct: 210 DHNHHKGLTYKQASDYGINHAQLPLGNFVKMN-SRKVLAVNHVFEIILEYLETRDWQEAF 268

Query: 373 LQFVPKRK 380
              +P+RK
Sbjct: 269 FTILPQRK 276


>gi|22748659 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 27/248 (10%)

Query: 146 RQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQP- 204
           RQ+KK +K    EE + ++  +  E+ K+K        +R   +     G    +  +  
Sbjct: 43  RQMKKLIKQKQWEEQRELRKQKRKEKRKRKKL------ERQCQMEPNSDGHDRKRVRRDV 96

Query: 205 ------LVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHREL 258
                 L+ D ++++ M  K+++    Q+      NRR + P   Y  +       H   
Sbjct: 97  VHSTLRLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTS-------HGGQ 149

Query: 259 VKRYQEKWDKLLLTSTE-----KSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFV 313
           +K+  ++ DK  +   +     + + +L  K+ +IYLT+DSPN++      K YVIG  V
Sbjct: 150 LKKNMDENDKGWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLV 209

Query: 314 DKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRILLCLKNNGNWQEA- 372
           D +   G +  +A    +    LPL  +++     K L ++ +  I+L      +WQEA 
Sbjct: 210 DHNHHKGLTYKQASDYGINHAQLPLGNFVKMN-SRKVLAVNHVFEIILEYLETRDWQEAF 268

Query: 373 LQFVPKRK 380
              +P+RK
Sbjct: 269 FTILPQRK 276


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
           sapiens]
          Length = 2168

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 98  IEMWRLLGREVPEHITEEELK--TLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAA 155
           I++ R L ++    + +E  K   +M       +K+ +K +  +EK+K+ +QI+ E +  
Sbjct: 901 IKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELR 960

Query: 156 A----------REEAKNIKLLETTEEDKQK 175
           A          +EEA N KLLE  +  K+K
Sbjct: 961 AQQILEAKKKKKEEAANAKLLEAEKRIKEK 990


>gi|195976782 Paf1/RNA polymerase II complex component [Homo
           sapiens]
          Length = 710

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 71  KSSVQEECVSTISSSKDEDPLAATREFIEMWR--LLGREVPEHITEEELKTLMECVSNTA 128
           +  V +   ++ SSS D D  +   EF + +   L+G        EE+   L +      
Sbjct: 152 EGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMG-------DEEDRARLEQMTEKER 204

Query: 129 KKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQK 175
           +++    +  +E +K+  +IKK++K A ++E K  K  +  E++K+K
Sbjct: 205 EQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKK 251


>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
          Length = 726

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 71  KSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHI--TEEELKTLMECVSNTA 128
           +SS   E  S+ S S D +   ATR           E+ E +    E+L  L +   N  
Sbjct: 438 ESSRSSEESSSDSGSSDSEEERATRL---------AELQEQLKAVHEQLAALSQAPVNKP 488

Query: 129 KKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQK 175
           KKK  K    KEK KK ++ +KE      EE K  K+    ++ +QK
Sbjct: 489 KKK--KEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAPPAKQAQQK 533


>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
          Length = 1163

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 21/155 (13%)

Query: 41  SSKIPAVTYPKNESTP--PSEELELDKW-KTTMKSSVQE-ECVSTISSSKDEDPLAATRE 96
           SS+ P   YP++  TP  PS   E D + +  M S ++E E +S +S   D  PL    +
Sbjct: 662 SSQTPK--YPESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKID 719

Query: 97  FIEMWRLLGR-------------EVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKVK 143
              + R+ G+              VPE  T E  K   E VSN  K+K+        +  
Sbjct: 720 LNLLTRIPGKPYKETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKN--EDDNRAS 777

Query: 144 KARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL 178
           ++++ K E K +A  +  + +        K+K+ L
Sbjct: 778 ESKKPKTEDKNSAGHKPSSNRESSKQSAAKEKDLL 812


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 59  EELELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELK 118
           E+ +  K   TM+ S  +E +      +D+    + +E I+    +  E+   I EEE K
Sbjct: 285 EDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKK 344

Query: 119 TLMECVSNTAKKKYLKYLYTK--EKVKKARQIKKEM---KAAAREEAKNIKLLETTEEDK 173
           TL      T   K L  L  +  +K ++ + +K E+   K   R+ ++ IK L  T E+ 
Sbjct: 345 TLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEEL 404

Query: 174 QK 175
           QK
Sbjct: 405 QK 406


>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
          Length = 3899

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 59  EELELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELK 118
           E+ +  K   TM+ S  +E +      +D+    + +E I+    +  E+   I EEE K
Sbjct: 285 EDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKK 344

Query: 119 TLMECVSNTAKKKYLKYLYTK--EKVKKARQIKKEM---KAAAREEAKNIKLLETTEEDK 173
           TL      T   K L  L  +  +K ++ + +K E+   K   R+ ++ IK L  T E+ 
Sbjct: 345 TLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEEL 404

Query: 174 QK 175
           QK
Sbjct: 405 QK 406


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
           [Homo sapiens]
          Length = 2903

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 44/164 (26%)

Query: 56  PPSEELELDKWKTTM----KSSVQEECVSTISSSKD---EDPLAATREFIEMWRLLGREV 108
           PP EE+  D+W+  +    K     +CV+ I  +K     +P+   R   + W L  R +
Sbjct: 419 PPLEEVPEDEWQCEVCVAHKVPGVTDCVAEIQKNKPYIRHEPIGYDRSRRKYWFLNRRLI 478

Query: 109 PEHITEEE-------------LKTLMECVSNTAKKKYLKYLY-------------TKEKV 142
            E  TE E             L  L++C+     +  L  +              T++  
Sbjct: 479 IEEDTENENEKKIWYYSTKVQLAELIDCLDKDYWEAELCKILEEMREEIHRHMDITEDLT 538

Query: 143 KKARQIKKEMKAAAREE-----------AKNIKLLETTEEDKQK 175
            KAR   K   AAA EE             N+K  E TE+DK +
Sbjct: 539 NKARGSNKSFLAAANEEILESIRAKKGDIDNVKSPEETEKDKNE 582


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
           [Homo sapiens]
          Length = 2920

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 44/164 (26%)

Query: 56  PPSEELELDKWKTTM----KSSVQEECVSTISSSKD---EDPLAATREFIEMWRLLGREV 108
           PP EE+  D+W+  +    K     +CV+ I  +K     +P+   R   + W L  R +
Sbjct: 419 PPLEEVPEDEWQCEVCVAHKVPGVTDCVAEIQKNKPYIRHEPIGYDRSRRKYWFLNRRLI 478

Query: 109 PEHITEEE-------------LKTLMECVSNTAKKKYLKYLY-------------TKEKV 142
            E  TE E             L  L++C+     +  L  +              T++  
Sbjct: 479 IEEDTENENEKKIWYYSTKVQLAELIDCLDKDYWEAELCKILEEMREEIHRHMDITEDLT 538

Query: 143 KKARQIKKEMKAAAREE-----------AKNIKLLETTEEDKQK 175
            KAR   K   AAA EE             N+K  E TE+DK +
Sbjct: 539 NKARGSNKSFLAAANEEILESIRAKKGDIDNVKSPEETEKDKNE 582


>gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo
           sapiens]
          Length = 529

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 32/154 (20%)

Query: 107 EVPEHI---TEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREE---- 159
           EV EH+   T++E++          +K Y K+L  +E+ K++ QI K  K   REE    
Sbjct: 274 EVLEHLPGKTQDEVQQ--------HEKWYQKFLALEERKKESIQIWKTKKQQKREEIFKL 325

Query: 160 ---AKNIKLL---------ETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVF 207
              A N  +L         +  EE ++K  L +  W +   I M  K A  ++  +    
Sbjct: 326 KEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLKEEEE--- 382

Query: 208 DMAYENYMKRKELQNTVSQLLESEGWNRRNVDPF 241
               + + K ++ Q  +  LLES    ++  + F
Sbjct: 383 --KEKKHQKERQRQFKLKLLLESYTQQKKEQEEF 414


>gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo
           sapiens]
          Length = 446

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 32/154 (20%)

Query: 107 EVPEHI---TEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREE---- 159
           EV EH+   T++E++          +K Y K+L  +E+ K++ QI K  K   REE    
Sbjct: 191 EVLEHLPGKTQDEVQQ--------HEKWYQKFLALEERKKESIQIWKTKKQQKREEIFKL 242

Query: 160 ---AKNIKLL---------ETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVF 207
              A N  +L         +  EE ++K  L +  W +   I M  K A  ++  +    
Sbjct: 243 KEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLKEEEE--- 299

Query: 208 DMAYENYMKRKELQNTVSQLLESEGWNRRNVDPF 241
               + + K ++ Q  +  LLES    ++  + F
Sbjct: 300 --KEKKHQKERQRQFKLKLLLESYTQQKKEQEEF 331


>gi|153791492 eukaryotic translation initiation factor 3, subunit
           C-like [Homo sapiens]
          Length = 914

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 48  TYPKNESTPPSEELELDKWKTTMKSSVQEE----CVSTISSSKDEDPLAATREFIEMWRL 103
           +Y +N      E+ E ++  +   S   E+      +T    K E P   +R+F++    
Sbjct: 158 SYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDD 217

Query: 104 LGREVPEHITEEELKTLMECVSNTAKK----------KYLKYLYTKEKVKKARQIKKEMK 153
              +  +   +E+  T      + +++          ++LK   T ++ KKA + K+E K
Sbjct: 218 EDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDK 277

Query: 154 AAAREEAKNIKLLETTEEDKQ 174
           A  + + K+ +L E  EED +
Sbjct: 278 AKKKHDRKSKRLDEEEEEDNE 298


>gi|45505178 cancer antigen 1 [Homo sapiens]
          Length = 641

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 32/131 (24%), Positives = 68/131 (51%), Gaps = 12/131 (9%)

Query: 59  EELELDKWKTTMKSSVQEECVSTISS--SKDEDPLAATREFIEMWRLLGREVPEHIT--E 114
           EEL  DK+K  ++ +  ++ +  +    +  +  L  +R   EM +L  +++  +    +
Sbjct: 226 EELIEDKYKIILEKNDTKKTLQNLEEVLANTQKHLQESRNDKEMLQLQFKKIKANYVCLQ 285

Query: 115 EELKTLMECVSNTAKKKYLKYLYT----KEKVKKARQIKKEMKAAAREEAKNIKLLETTE 170
           E   T M+   N +  +YL+   T    +E+V++ +Q+KKE++ A    A  + LL+  +
Sbjct: 286 ERYMTEMQ-QKNKSVSQYLEMDKTLSKKEEEVERLQQLKKELEKAT---ASALDLLKREK 341

Query: 171 EDKQKNFLFLR 181
           E +++ FL L+
Sbjct: 342 EAQEQEFLSLQ 352



 Score = 32.7 bits (73), Expect = 0.60
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 29  KRNNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQEECVSTISSSKDE 88
           K N + + +RYM+         KN+S   S+ LE+DK       S +EE V  +   K E
Sbjct: 278 KANYVCLQERYMTEM-----QQKNKSV--SQYLEMDK-----TLSKKEEEVERLQQLKKE 325

Query: 89  DPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKA-RQ 147
              A          LL RE  +   E+E  +L E      K+   +    K +++K   Q
Sbjct: 326 LEKATASAL----DLLKRE--KEAQEQEFLSLQEEFQKLEKENLEERQKLKSRLEKLLTQ 379

Query: 148 IKKEMKAAAREEAKNIKLLETTEEDKQKN 176
           ++     +  E  KNIKL +   E K +N
Sbjct: 380 VRNLQFMSENERTKNIKLQQQINEVKNEN 408


>gi|23503243 Ras association (RalGDS/AF-6) domain family
           (N-terminal) member 8 [Homo sapiens]
          Length = 392

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQEECVSTISSSKDEDP 90
           + L  L R  + K+ ++     E    S E+E+  W+    S+++EE V      K  D 
Sbjct: 164 DELKKLIRLQTEKLQSI-----EKQLESNEIEIRFWEQKYNSNLEEEIVRLEQKIKRNDV 218

Query: 91  LAATREFIEMWRLLGREVPEHI---TEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQ 147
                EF E    + +E  + +    +E  + + EC +    K YL  + T E   +A +
Sbjct: 219 EIEEEEFWENELQIEQENEKQLKDQLQEIRQKITECENKL--KDYLAQIRTMESGLEAEK 276

Query: 148 IKKEMKAAAREE 159
           +++E++ A   E
Sbjct: 277 LQREVQEAQVNE 288


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 109 PEHITEEELKTLM----ECVSNTAKKKYLKYLYTK---EKVKKARQIKKEMKAAAREEAK 161
           PE +  E  + L     + + +   KK+LK   +K   +K K+ ++IKKE K   ++E +
Sbjct: 377 PERVKTESSEALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKERKELKKDEGR 436

Query: 162 NIKLLETTEEDKQKN 176
             +  +  +E+K+K+
Sbjct: 437 KEEKKDAKKEEKRKD 451


>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
          Length = 543

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 52  NESTPPSEELELDKWKTTMKSSV-QEECVSTISSSKDEDPLAATREFIEMWRLLGREVPE 110
           NE      + +++K K+  +S V +E  +  +SSS++E+   +  + +E W LLG EV +
Sbjct: 126 NELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLGCEVDD 185

Query: 111 HITEEELKTLMECVSNTAK 129
              ++ L  L+ C ++  +
Sbjct: 186 K-DDDILLNLVGCENSVTE 203


>gi|93204861 protein phosphatase 1, regulatory (inhibitor) subunit
           9A [Homo sapiens]
          Length = 1098

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 22/146 (15%)

Query: 50  PKNESTPPSEELELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVP 109
           P+NE      EL+  K     K    +  V+     K +  L A       W L   ++ 
Sbjct: 660 PENEDMFSPSELDTSKLSHKFKELQIKHAVTEAEIQKLKTKLQAAENEKVRWELEKTQLQ 719

Query: 110 EHITEE------------ELKTLMECVSNTAKKKYLKYLYTKEKVKKARQI-----KKEM 152
           ++I E             E +TL   V+   K+   +Y   ++K  KA+++     +KE+
Sbjct: 720 QNIEENKERMLKLESYWIEAQTLCHTVNEHLKETQSQYQALEKKYNKAKKLIKDFQQKEL 779

Query: 153 KAAAREEAKNIKLLETTEEDKQKNFL 178
               R+EA+  K+     ED +K  L
Sbjct: 780 DFIKRQEAERKKI-----EDLEKAHL 800


>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
          Length = 1670

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 68/364 (18%)

Query: 43  KIPAVTYPKNESTPPSEELELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWR 102
           K+P     K ++      +EL+K +  +    Q E        K+E            W 
Sbjct: 358 KLPVTFEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEE------------WE 405

Query: 103 LLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEK---VKKARQIKKEMKAAAREE 159
              RE    + E+E K  +E      K++ L+    +E+   +++    K+E++   R E
Sbjct: 406 RKQRE----LQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLE 461

Query: 160 AKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKE 219
            + I+  E   +  ++    +RL  +  ++ +  +       G+        ++   +K+
Sbjct: 462 WERIRRQELLNQKNREQEEIVRLNSKKKNLHLELEALN----GKHQQISGRLQDVRLKKQ 517

Query: 220 LQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV 279
            Q T  ++L+ +              C+L+I     ++L +  QE  +KL+    EK  +
Sbjct: 518 TQKTELEVLDKQ--------------CDLEIMEI--KQLQQELQEYQNKLIYLVPEKQLL 561

Query: 280 DLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLD 339
           +   K+     T DS                         G SL   K L     C  L 
Sbjct: 562 NERIKNMQFSNTPDS-------------------------GVSLLHKKSLEKEELCQRLK 596

Query: 340 KY---LQWEIGNKNLTLDQMIRILLCLKNNGNWQE-ALQFVPKRKHTGFLEISQHSQEFI 395
           +    L+ E  +K   +D     L  L+   N Q+ AL+ + K K     EI +   E +
Sbjct: 597 EQLDALEKETASKLSEMDSFNNQLKELRETYNTQQLALEQLYKIKRDKLKEIERKRLELM 656

Query: 396 NRLK 399
            + K
Sbjct: 657 QKKK 660


>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
          Length = 983

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 714 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 763

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 764 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 823

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 824 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 882

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 883 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 916


>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
          Length = 972

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 703 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 752

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 753 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 812

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 813 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 871

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 872 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 905


>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
          Length = 951

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 682 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 731

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 732 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 791

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 792 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 850

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 851 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 884


>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 711 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 760

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 761 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 820

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 821 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 879

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 880 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 913


>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 711 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 760

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 761 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 820

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 821 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 879

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 880 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 913


>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 31  NNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE--ECVSTIS---SS 85
           N LT L++ + ++       K  S   +E L++    TT++++ +E  E +S +    +S
Sbjct: 711 NELTQLKQLVDAQ-------KENSVSITEHLQVI---TTLRTAAKEMEEKISNLKEHLAS 760

Query: 86  KDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKV-KK 144
           K+ +     ++ +E    +   +    + E+L++ +E   +    K  + +  KEKV  +
Sbjct: 761 KEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSE 820

Query: 145 ARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFL--FLRLWDRNMDIAMGWKGAQAMQFG 202
             QI+ E+    RE+ +NI+ L  ++E +    L  F +  +   ++    + +  ++  
Sbjct: 821 VVQIRSEVSQVKREK-ENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEED 879

Query: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRR 236
           +    +   +   K KE  N++SQL  S   ++R
Sbjct: 880 KDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKR 913


>gi|153791218 hypothetical protein LOC115749 [Homo sapiens]
          Length = 462

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 106 REVPEHITEEELKTLM--ECVSNTAKKKYL-KYLYTKEKVKKARQIKKEMKAAAREEAKN 162
           RE+ +HI      T++  EC  + + +K+L  + +TK   KK ++ K  +     +E+++
Sbjct: 97  REISQHIRIIYSSTVLKKECKKSNSVRKFLFPFHHTKANNKKVKEEKNGLAFWRSKESRS 156

Query: 163 IKLLETTEEDKQKNFLFLR 181
           +K      E+K K+F  L+
Sbjct: 157 LKESPLRSEEKIKHFSQLK 175



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 136 LYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDI 189
           L ++EK+K   Q+K E+        + + LL   +   QKNF+  RL+ +  D+
Sbjct: 162 LRSEEKIKHFSQLKSELFLKDNSLRRILSLLMELKVAAQKNFILKRLFWKTSDL 215


>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
          Length = 474

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 36/269 (13%)

Query: 23  PFTLHRKRNNLTILQRYMSS-KIPAVTYPKNESTPPSEELELDKWKTTMKSSVQ--EECV 79
           PF L    N L  LQ+     KI   TY         E  +L K   T+++  +  EE +
Sbjct: 53  PFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFI 112

Query: 80  STISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAK-KKYLKYLYT 138
           S     K    + A ++  E   +   +  E +T E  + LM+     A+ +++L+    
Sbjct: 113 SNTLFKK----IQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQE 168

Query: 139 KEKVKKARQIKKE-----MKAAAREEAKNIKL-LETTEEDKQKNFLFLRLWDRNMDIAMG 192
            +  K  ++IKK       K    E+ +  K+ LE T E +Q+  L  RLW R MD    
Sbjct: 169 FQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEA-LVNRLWKR-MDKLEA 226

Query: 193 WKGAQAMQFGQPLVF-----DMAYE---------------NYMKRKELQNTVSQLLESEG 232
            K     +  QP+       D++ E               N ++R + Q   +QL  SE 
Sbjct: 227 EKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEK 286

Query: 233 WNRRNVDPFHIYFCNLKIDGALHRELVKR 261
             +   +  H+   NL++   L RE+ +R
Sbjct: 287 MAQYLEEERHMREENLRLQRKLQREMERR 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,427,957
Number of Sequences: 37866
Number of extensions: 616613
Number of successful extensions: 2691
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2614
Number of HSP's gapped (non-prelim): 126
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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