Guide to the Human Genome
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Search of human proteins with 10835147

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo
sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo sa...   328   2e-90
gi|27894319 interleukin 1 receptor antagonist isoform 1 precurso...   323   5e-89
gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo sa...   323   5e-89
gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo sa...   296   4e-81
gi|27894310 interleukin 1 family, member 5 [Homo sapiens]             123   6e-29
gi|6912432 interleukin 1 family, member 5 [Homo sapiens]              123   6e-29
gi|27894307 interleukin 1 family, member 10 [Homo sapiens]             97   8e-21
gi|27894304 interleukin 1 family, member 10 [Homo sapiens]             97   8e-21
gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens]     71   4e-13
gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]    68   4e-12
gi|9665234 interleukin 1 family, member 9 [Homo sapiens]               65   3e-11
gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens]    58   4e-09
gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein ...    58   4e-09
gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens]    58   4e-09
gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens]    57   7e-09
gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens]    57   7e-09
gi|10835145 interleukin 1, beta proprotein [Homo sapiens]              53   1e-07
gi|194239668 SHC (Src homology 2 domain containing) transforming...    28   2.5  
gi|194239664 SHC (Src homology 2 domain containing) transforming...    28   2.5  
gi|194239662 SHC (Src homology 2 domain containing) transforming...    28   2.5  
gi|32261324 SHC (Src homology 2 domain containing) transforming ...    28   2.5  
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ...    28   3.3  
gi|169790811 SHC (Src homology 2 domain containing) transforming...    28   3.3  
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa...    27   7.4  

>gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo
           sapiens]
          Length = 159

 Score =  328 bits (840), Expect = 2e-90
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP 60
           MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
Sbjct: 1   MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP 60

Query: 61  HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES 120
           HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES
Sbjct: 61  HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES 120

Query: 121 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 159
           AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 121 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 159


>gi|27894319 interleukin 1 receptor antagonist isoform 1 precursor
           [Homo sapiens]
          Length = 177

 Score =  323 bits (827), Expect = 5e-89
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 4   ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 63
           ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL
Sbjct: 22  ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 81

Query: 64  FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 123
           FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC
Sbjct: 82  FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 141

Query: 124 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 159
           PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 142 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 177


>gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo
           sapiens]
          Length = 180

 Score =  323 bits (827), Expect = 5e-89
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 4   ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 63
           ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL
Sbjct: 25  ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 84

Query: 64  FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 123
           FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC
Sbjct: 85  FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 144

Query: 124 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 159
           PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 145 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 180


>gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo
           sapiens]
          Length = 143

 Score =  296 bits (759), Expect = 4e-81
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 17  MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 76
           MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC
Sbjct: 1   MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60

Query: 77  VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 136
           VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ
Sbjct: 61  VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120

Query: 137 PVSLTNMPDEGVMVTKFYFQEDE 159
           PVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 121 PVSLTNMPDEGVMVTKFYFQEDE 143


>gi|27894310 interleukin 1 family, member 5 [Homo sapiens]
          Length = 155

 Score =  123 bits (309), Expect = 6e-29
 Identities = 73/148 (49%), Positives = 86/148 (58%), Gaps = 13/148 (8%)

Query: 20  FRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALFLGIHGGKM 72
           FR+ D   K  YL NNQL+AG L    V   E+I VVP       + P  + LG+ GG  
Sbjct: 9   FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66

Query: 73  CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 132
           CLSC   G E  L LE VNI +L    K+ K F F R D G T+SFESAA PGWFLCT  
Sbjct: 67  CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125

Query: 133 EADQPVSLTNMPDEG---VMVTKFYFQE 157
           EADQPV LT +P+ G     +T FYFQ+
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153


>gi|6912432 interleukin 1 family, member 5 [Homo sapiens]
          Length = 155

 Score =  123 bits (309), Expect = 6e-29
 Identities = 73/148 (49%), Positives = 86/148 (58%), Gaps = 13/148 (8%)

Query: 20  FRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALFLGIHGGKM 72
           FR+ D   K  YL NNQL+AG L    V   E+I VVP       + P  + LG+ GG  
Sbjct: 9   FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66

Query: 73  CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 132
           CLSC   G E  L LE VNI +L    K+ K F F R D G T+SFESAA PGWFLCT  
Sbjct: 67  CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125

Query: 133 EADQPVSLTNMPDEG---VMVTKFYFQE 157
           EADQPV LT +P+ G     +T FYFQ+
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153


>gi|27894307 interleukin 1 family, member 10 [Homo sapiens]
          Length = 152

 Score = 96.7 bits (239), Expect = 8e-21
 Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 26  NQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHA-----LFLGIHGGKMCLSCVKSG 80
           +QK  Y R+ QL+ G     N    EKI ++P    A     +FLGI GG  CL+CV++ 
Sbjct: 16  DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74

Query: 81  DETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSL 140
           +   LQLE VNI +L +  ++  RF F +S SG     E+AA PGWFLC   E  QPV L
Sbjct: 75  EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134

Query: 141 TNMPDEGVMVTKFYFQE 157
           T   +     TKFYF++
Sbjct: 135 TKESEPSAR-TKFYFEQ 150


>gi|27894304 interleukin 1 family, member 10 [Homo sapiens]
          Length = 152

 Score = 96.7 bits (239), Expect = 8e-21
 Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 26  NQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHA-----LFLGIHGGKMCLSCVKSG 80
           +QK  Y R+ QL+ G     N    EKI ++P    A     +FLGI GG  CL+CV++ 
Sbjct: 16  DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74

Query: 81  DETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSL 140
           +   LQLE VNI +L +  ++  RF F +S SG     E+AA PGWFLC   E  QPV L
Sbjct: 75  EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134

Query: 141 TNMPDEGVMVTKFYFQE 157
           T   +     TKFYF++
Sbjct: 135 TKESEPSAR-TKFYFEQ 150


>gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens]
          Length = 158

 Score = 70.9 bits (172), Expect = 4e-13
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 22  IWDVNQKTFYLRNNQLVA----GYLQGPNVNLEEKIDVVPIEP---HALFLGIHGGKMCL 74
           I D+N + + L++  L+A      +    + L     V  +E    + ++LG++G  +CL
Sbjct: 15  IQDINHRVWVLQDQTLIAVPRKDRMSPVTIALISCRHVETLEKDRGNPIYLGLNGLNLCL 74

Query: 75  SCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEA 134
            C K GD+  LQL+  +I DL    +  K F F  S SG  ++FES A PGWF+  + E 
Sbjct: 75  MCAKVGDQPTLQLKEKDIMDLYNQPEPVKSFLFYHSQSGRNSTFESVAFPGWFIAVSSEG 134

Query: 135 DQPVSLT 141
             P+ LT
Sbjct: 135 GCPLILT 141


>gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]
          Length = 157

 Score = 67.8 bits (164), Expect = 4e-12
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 28/165 (16%)

Query: 12  RKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL-------- 63
           ++ +  +++ I D  Q  + L  N L+A  L            + P+  H +        
Sbjct: 4   QREAAPKSYAIRDSRQMVWVLSGNSLIAAPLSR---------SIKPVTLHLIACRDTEFS 54

Query: 64  --------FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPT 115
                   +LGI G  +CL C +   +  LQL+  NI DL   +K  K F F  +  G T
Sbjct: 55  DKEKGNMVYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEGST 114

Query: 116 TSFESAACPGWFLCTAMEADQPVSLTNMPDEGVM-VTKFYFQEDE 159
           + F+S + PGWF+ T+  + QP+ LT   + G+   T FY    E
Sbjct: 115 SVFQSVSYPGWFIATSTTSGQPIFLTK--ERGITNNTNFYLDSVE 157


>gi|9665234 interleukin 1 family, member 9 [Homo sapiens]
          Length = 169

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 16/130 (12%)

Query: 24  DVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIE---PHAL--------FLGIHGGKM 72
           D+NQ+ + L+   LVA     P  +    + V  I    P AL        +LGI   +M
Sbjct: 29  DLNQQVWTLQGQNLVAV----PRSDSVTPVTVAVITCKYPEALEQGRGDPIYLGIQNPEM 84

Query: 73  CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 132
           CL C K G++  LQL+   I DL    +  K F F R+ +G T++ ES A P WF+ ++ 
Sbjct: 85  CLYCEKVGEQPTLQLKEQKIMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIASS- 143

Query: 133 EADQPVSLTN 142
           + DQP+ LT+
Sbjct: 144 KRDQPIILTS 153


>gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens]
          Length = 197

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 13  KSSKMQAFRIWDVNQKTFYLRNNQLVA----GYLQGPNV--NLEEKIDVVPIEPHA-LFL 65
           K+   + F I D + K   L +  L+A     Y++ P +   L   +     E  + + L
Sbjct: 32  KNLNPKKFSIHDQDHKVLVLDSGNLIAVPDKNYIR-PEIFFALASSLSSASAEKGSPILL 90

Query: 66  GIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFESAA 122
           G+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     ESAA
Sbjct: 91  GVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAA 150

Query: 123 CPGWFLCTAMEADQPVSLTN 142
            PGWF+CT+   ++PV +T+
Sbjct: 151 HPGWFICTSCNCNEPVGVTD 170


>gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein
           [Homo sapiens]
          Length = 218

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 13  KSSKMQAFRIWDVNQKTFYLRNNQLVA----GYLQGPNV--NLEEKIDVVPIEPHA-LFL 65
           K+   + F I D + K   L +  L+A     Y++ P +   L   +     E  + + L
Sbjct: 53  KNLNPKKFSIHDQDHKVLVLDSGNLIAVPDKNYIR-PEIFFALASSLSSASAEKGSPILL 111

Query: 66  GIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFESAA 122
           G+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     ESAA
Sbjct: 112 GVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAA 171

Query: 123 CPGWFLCTAMEADQPVSLTN 142
            PGWF+CT+   ++PV +T+
Sbjct: 172 HPGWFICTSCNCNEPVGVTD 191


>gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens]
          Length = 192

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 13  KSSKMQAFRIWDVNQKTFYLRNNQLVA----GYLQGPNV--NLEEKIDVVPIEPHA-LFL 65
           K+   + F I D + K   L +  L+A     Y++ P +   L   +     E  + + L
Sbjct: 27  KNLNPKKFSIHDQDHKVLVLDSGNLIAVPDKNYIR-PEIFFALASSLSSASAEKGSPILL 85

Query: 66  GIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFESAA 122
           G+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     ESAA
Sbjct: 86  GVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAA 145

Query: 123 CPGWFLCTAMEADQPVSLTN 142
            PGWF+CT+   ++PV +T+
Sbjct: 146 HPGWFICTSCNCNEPVGVTD 165


>gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens]
          Length = 178

 Score = 57.0 bits (136), Expect = 7e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 63  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 119
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 69  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 128

Query: 120 SAACPGWFLCTAMEADQPVSLTN 142
           SAA PGWF+CT+   ++PV +T+
Sbjct: 129 SAAHPGWFICTSCNCNEPVGVTD 151


>gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens]
          Length = 157

 Score = 57.0 bits (136), Expect = 7e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 63  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 119
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 48  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107

Query: 120 SAACPGWFLCTAMEADQPVSLTN 142
           SAA PGWF+CT+   ++PV +T+
Sbjct: 108 SAAHPGWFICTSCNCNEPVGVTD 130


>gi|10835145 interleukin 1, beta proprotein [Homo sapiens]
          Length = 269

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 50  EEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIR 109
           EE  D +P+      LG+    + LSCV   D+  LQLE+V+  +  + +K +KRF F +
Sbjct: 166 EESNDKIPVA-----LGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPK-KKMEKRFVFNK 219

Query: 110 SDSGPTTSFESAACPGWFLCTAMEADQPVSL 140
            +      FESA  P W++ T+   + PV L
Sbjct: 220 IEINNKLEFESAQFPNWYISTSQAENMPVFL 250


>gi|194239668 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 4 [Homo sapiens]
          Length = 473

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           ES   PG ++ T +++ QP  L  +  EGV+ TK
Sbjct: 402 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 435


>gi|194239664 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 3 [Homo sapiens]
          Length = 584

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           ES   PG ++ T +++ QP  L  +  EGV+ TK
Sbjct: 513 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 546


>gi|194239662 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 1 [Homo sapiens]
          Length = 583

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           ES   PG ++ T +++ QP  L  +  EGV+ TK
Sbjct: 512 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 545


>gi|32261324 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 2 [Homo sapiens]
          Length = 474

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           ES   PG ++ T +++ QP  L  +  EGV+ TK
Sbjct: 403 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 436


>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
           sapiens]
          Length = 475

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           +S   PG ++ T M A QP  L  +  EGV+ TK
Sbjct: 404 DSVTNPGQYVLTGMHAGQPKHLLLVDPEGVVRTK 437


>gi|169790811 SHC (Src homology 2 domain containing) transforming
           protein 2 [Homo sapiens]
          Length = 582

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 119 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 152
           +S   PG ++ T M A QP  L  +  EGV+ TK
Sbjct: 511 DSVTNPGQYVLTGMHAGQPKHLLLVDPEGVVRTK 544


>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
           sapiens]
          Length = 631

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 50  EEKIDVVPIEPHALF--LGIHGGKMCLSCVKSGDET 83
           +EK  ++P++ H     L    GK C+ CVK+ + T
Sbjct: 254 KEKRGIIPLDAHCCVEVLPDRDGKRCMFCVKTANRT 289


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,131,959
Number of Sequences: 37866
Number of extensions: 240790
Number of successful extensions: 502
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 24
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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