BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo sapiens] (212 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ... 463 e-131 gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ... 463 e-131 gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ... 463 e-131 gi|239756030 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23 gi|239750584 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23 gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo ... 33 0.23 gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.68 gi|187761351 growth factor independent 1 [Homo sapiens] 31 0.89 gi|187761349 growth factor independent 1 [Homo sapiens] 31 0.89 gi|71037377 growth factor independent 1 [Homo sapiens] 31 0.89 gi|12707562 period 2 [Homo sapiens] 30 2.0 gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] 29 3.4 gi|22748655 hypothetical protein LOC93190 [Homo sapiens] 28 4.4 gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 28 5.7 gi|4502365 NK3 homeobox 2 [Homo sapiens] 28 5.7 gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 28 7.5 gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 28 7.5 gi|145309324 FH2 domain containing 1 [Homo sapiens] 28 7.5 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 28 7.5 gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo s... 28 7.5 gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo s... 28 7.5 gi|6005757 chromatin-specific transcription elongation factor la... 27 9.8 gi|19923559 EMSY protein [Homo sapiens] 27 9.8 gi|10190742 ubiquitin specific peptidase 29 [Homo sapiens] 27 9.8 gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 27 9.8 gi|149588928 SLAIN motif family, member 2 [Homo sapiens] 27 9.8 >gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo sapiens] Length = 212 Score = 463 bits (1192), Expect = e-131 Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV Sbjct: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 Query: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ Sbjct: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 Query: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR Sbjct: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 Query: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL Sbjct: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 >gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo sapiens] Length = 212 Score = 463 bits (1192), Expect = e-131 Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV Sbjct: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 Query: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ Sbjct: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 Query: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR Sbjct: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 Query: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL Sbjct: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 >gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo sapiens] Length = 212 Score = 463 bits (1192), Expect = e-131 Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV Sbjct: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 Query: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ Sbjct: 61 CQEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIPGWPVHREHCLCGHWGRQ 120 Query: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR Sbjct: 121 LHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRR 180 Query: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL Sbjct: 181 SVTRPATATYSEPHSAHRGCGLLFPNHRPECL 212 >gi|239756030 PREDICTED: hypothetical protein [Homo sapiens] Length = 159 Score = 32.7 bits (73), Expect = 0.23 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201 PPS+ C C LL KLP CW RP + P +A G G Sbjct: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94 >gi|239750584 PREDICTED: hypothetical protein [Homo sapiens] Length = 159 Score = 32.7 bits (73), Expect = 0.23 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201 PPS+ C C LL KLP CW RP + P +A G G Sbjct: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94 >gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo sapiens] Length = 159 Score = 32.7 bits (73), Expect = 0.23 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201 PPS+ C C LL KLP CW RP + P +A G G Sbjct: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94 >gi|146134388 YLP motif containing 1 [Homo sapiens] Length = 2146 Score = 31.2 bits (69), Expect = 0.68 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 96 PPSHCPIPGWPVHREHCLCGHWGRQLHPRDDGVQGMTRKLFVWPGD---VPGAGWRPPSL 152 PP P P P + + LH + DG G+ P + VP + PPS Sbjct: 103 PPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQ 162 Query: 153 TSLPPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP 193 + +PP + P+S P+ +Q P + +Y P Sbjct: 163 SYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAP 203 >gi|187761351 growth factor independent 1 [Homo sapiens] Length = 422 Score = 30.8 bits (68), Expect = 0.89 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 147 WRPPSLTSLPPSFLCCCFLL------PSSKLPWCWSSQRRSVTRPATATYSEPHSAHRGC 200 WRPPS ++ P S C L P P+ WS S R +Y + RG Sbjct: 90 WRPPSPSASPASEKSMCPSLDEAQPFPLPFKPYSWSGLAGSDLRHLVQSYRPCGALERGA 149 Query: 201 GL-LFPNHRPE 210 GL LF PE Sbjct: 150 GLGLFCEPAPE 160 >gi|187761349 growth factor independent 1 [Homo sapiens] Length = 422 Score = 30.8 bits (68), Expect = 0.89 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 147 WRPPSLTSLPPSFLCCCFLL------PSSKLPWCWSSQRRSVTRPATATYSEPHSAHRGC 200 WRPPS ++ P S C L P P+ WS S R +Y + RG Sbjct: 90 WRPPSPSASPASEKSMCPSLDEAQPFPLPFKPYSWSGLAGSDLRHLVQSYRPCGALERGA 149 Query: 201 GL-LFPNHRPE 210 GL LF PE Sbjct: 150 GLGLFCEPAPE 160 >gi|71037377 growth factor independent 1 [Homo sapiens] Length = 422 Score = 30.8 bits (68), Expect = 0.89 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 147 WRPPSLTSLPPSFLCCCFLL------PSSKLPWCWSSQRRSVTRPATATYSEPHSAHRGC 200 WRPPS ++ P S C L P P+ WS S R +Y + RG Sbjct: 90 WRPPSPSASPASEKSMCPSLDEAQPFPLPFKPYSWSGLAGSDLRHLVQSYRPCGALERGA 149 Query: 201 GL-LFPNHRPE 210 GL LF PE Sbjct: 150 GLGLFCEPAPE 160 >gi|12707562 period 2 [Homo sapiens] Length = 1255 Score = 29.6 bits (65), Expect = 2.0 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 9 GKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCVCQEITLSL 68 G+ K K +TE KK V + + L S + + CKN C Q+I+ L Sbjct: 534 GEQKKKSVTEMQTNPPAEKKAVPAMEK---DSLGVSFPEEL--ACKNQPTCSYQQIS-CL 587 Query: 69 DFVDHFLIS-NPDKSLLVKLVFPSTSP 94 D V +L S N +L K FP+ P Sbjct: 588 DSVIRYLESCNEAATLKRKCEFPANVP 614 >gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] Length = 914 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/42 (38%), Positives = 19/42 (45%) Query: 62 QEITLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPSHCPIP 103 QE +S + NP + L L PST P PSH P P Sbjct: 746 QERGISAKVYHSPISENPLQPLPKSLAIPSTPPNSPSHSPCP 787 >gi|22748655 hypothetical protein LOC93190 [Homo sapiens] Length = 194 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210 W +RR TR T P S +R + FP+HRP+ Sbjct: 31 WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63 >gi|28912912 NK6 transcription factor related, locus 2 [Homo sapiens] Length = 277 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 138 WPGDVPGAGWRPPSLTSLPPS 158 WPG V GA WR P L P+ Sbjct: 118 WPGVVQGAPWRDPRLAGPAPA 138 >gi|4502365 NK3 homeobox 2 [Homo sapiens] Length = 333 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Query: 142 VPGAGWRPPSLTSLPPSFLCCCFLLPSSKLPWC 174 +PG RPPSL L PS+ + LP L C Sbjct: 294 LPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTC 326 >gi|33598931 scavenger receptor class F, member 1 isoform 3 precursor [Homo sapiens] Length = 569 Score = 27.7 bits (60), Expect = 7.5 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 17/86 (19%) Query: 112 CLCGHWGRQLHPRD----DGVQGMTRKLFVWPGDVPGAGWRPPSLTSLPPSFLCCCFLLP 167 C C W + +D DG KL VW +LTSL + C L Sbjct: 441 CACCCWAPRSDLKDRPARDGATVSRMKLQVWG-----------TLTSLGSTLPCRS--LS 487 Query: 168 SSKLPWCWSSQRRSVTRPATATYSEP 193 S KLPW +S R + T S P Sbjct: 488 SHKLPWVTASSSRPLPAGPLMTPSHP 513 >gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] Length = 224 Score = 27.7 bits (60), Expect = 7.5 Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 13/119 (10%) Query: 91 STSPYPPSHCPIPGWPVHREHCLCGHWGRQLHPRDD---GVQGM--TRKLFVWPGDVPGA 145 S++P+PP P R G R R D GVQG R + G PGA Sbjct: 3 SSAPHPPIQALFDR-PGSRPSSAVGEGSRVPGRRLDEGGGVQGRWKNRGRGTYRGAGPGA 61 Query: 146 GWRPPSLTSLPPSFLCCCFLLPSSKL---PWCWSSQRRSVTRPATATYSEPHSAHRGCG 201 G PP T P + P S+ WCW+ +V A S S G G Sbjct: 62 GSAPPGETPAPYTRRSG----PRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFG 116 >gi|145309324 FH2 domain containing 1 [Homo sapiens] Length = 1143 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%) Query: 144 GAGWRPPSLTSLPPSFLCCCFLLPSSKLPWCWSSQRRSVTRPAT 187 GAGWR P L+S PS P S WS Q SV R +T Sbjct: 914 GAGWRRPELSSRGPS------QNPPSSTDTVWSRQ-NSVRRAST 950 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 96 PPSHCPIPGWPVHREHCLCGHWGRQLHPRDDGVQGMTRKLFVWPGDVPGAGWRPPSLTSL 155 PP H P P H++ + P D + + + PG PG G PP+ +S Sbjct: 82 PPPHQPPPHPQPHQQQ-------QPPPPPQDSSKPVVAQ---GPGPAPGVGSAPPASSSA 131 Query: 156 PPS 158 PP+ Sbjct: 132 PPA 134 >gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo sapiens] Length = 966 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%) Query: 23 ANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV--CQEITLSLDFVDHF 74 +N++KKQ T S ++ S++NT++ R + KC+ C EI DF +HF Sbjct: 579 SNMQKKQSTLASSNKKSKVNTAL--RNLRYRRGIHKCIECCSEIK---DFANHF 627 >gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo sapiens] Length = 979 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%) Query: 23 ANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV--CQEITLSLDFVDHF 74 +N++KKQ T S ++ S++NT++ R + KC+ C EI DF +HF Sbjct: 592 SNMQKKQSTLASSNKKSKVNTAL--RNLRYRRGIHKCIECCSEIK---DFANHF 640 >gi|6005757 chromatin-specific transcription elongation factor large subunit [Homo sapiens] Length = 1047 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 16 ITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKN 55 I ++GG N++ V+D + F + +M R K C N Sbjct: 246 IIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSN 285 >gi|19923559 EMSY protein [Homo sapiens] Length = 1322 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 16 ITETGGGANIRK--KQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCVCQEITLSLDFVDH 73 +T+ GG+++ K VT +S + SE T++S +K++ E + + V+H Sbjct: 1116 VTKITGGSSVPKLTSPVTSISPIQASE-KTAVSDILKMSL--------MEAQIDTN-VEH 1165 Query: 74 FLISNPDKSLLVKLVFPSTSPYPPSHCPIPG 104 ++ P K+L ++ P +H + G Sbjct: 1166 MIVDPPKKALATSMLTGEAGSLPSTHMVVAG 1196 >gi|10190742 ubiquitin specific peptidase 29 [Homo sapiens] Length = 922 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/38 (31%), Positives = 24/38 (63%) Query: 23 ANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 A + K +V +VSQ SE+N+ ++ +K+T +++ V Sbjct: 555 APVGKCEVLEVSQEMISEINSPLTPSMKLTSESSDSLV 592 >gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo sapiens] Length = 1560 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 76 ISNPDKSLLVKLVFPSTSPYPPSHCPIP 103 +++P S+LV PS +P PSH P P Sbjct: 992 LTSPAASVLVSGQAPSGTPTAPSHAPAP 1019 >gi|149588928 SLAIN motif family, member 2 [Homo sapiens] Length = 581 Score = 27.3 bits (59), Expect = 9.8 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 1 MTPAKDVDGKTKSKQITETGGGANIRKKQVTDVSQHRFSELNTSMSQRIKVTCKNTSKCV 60 ++P +D + + ++ E G+N + VTDV + + + T + +S Sbjct: 246 LSPQSSIDSELSASELDEDSIGSNYKLNDVTDVQILARMQEESLRQEYAATTSRRSSGSS 305 Query: 61 CQEI---TLSLDFVDHFLISNPDKSLLVKLVFPSTSPYPPS 98 C T S +D + + D + + V+P+ + + PS Sbjct: 306 CNSTRRGTFSDQELDAQSLDDEDDN-MHHAVYPAVNRFSPS 345 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.136 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,197,316 Number of Sequences: 37866 Number of extensions: 513230 Number of successful extensions: 1453 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 1435 Number of HSP's gapped (non-prelim): 28 length of query: 212 length of database: 18,247,518 effective HSP length: 98 effective length of query: 114 effective length of database: 14,536,650 effective search space: 1657178100 effective search space used: 1657178100 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.