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Search of human proteins with 239749357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 243 2e-65
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 116 3e-27
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 116 3e-27
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 116 3e-27
gi|50344744 beta-defensin 108B [Homo sapiens] 115 1e-26
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 33 0.038
gi|83582800 beta-defensin 116 [Homo sapiens] 33 0.049
gi|82734223 beta-defensin 124 [Homo sapiens] 33 0.064
gi|5730124 zinc finger protein 217 [Homo sapiens] 32 0.11
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 31 0.19
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 31 0.24
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 31 0.24
gi|83582794 beta-defensin 110 [Homo sapiens] 30 0.32
gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo ... 30 0.42
gi|52353320 FSHD region gene 2 [Homo sapiens] 30 0.42
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 30 0.54
gi|82734214 beta-defensin 111 [Homo sapiens] 29 0.92
gi|16905373 beta-defensin 118 [Homo sapiens] 29 0.92
gi|56549093 B-cell receptor-associated protein BAP29 isoform a [... 28 1.2
gi|56549091 B-cell receptor-associated protein BAP29 isoform b [... 28 1.2
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 28 1.2
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 28 1.2
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 28 1.2
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 28 2.1
gi|239743215 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 27 2.7
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 27 2.7
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 27 2.7
gi|237858656 ring finger protein 170 isoform b [Homo sapiens] 27 3.5
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 27 3.5
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 243 bits (621), Expect = 2e-65
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MRWQHRTFGLSGGPESESLKFRCGLFSTFFWKIKWKLSTISCALIKEDGNKEANSKITRG 60
MRWQHRTFGLSGGPESESLKFRCGLFSTFFWKIKWKLSTISCALIKEDGNKEANSKITRG
Sbjct: 1 MRWQHRTFGLSGGPESESLKFRCGLFSTFFWKIKWKLSTISCALIKEDGNKEANSKITRG 60
Query: 61 KFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
KFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD
Sbjct: 61 KFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 116 bits (291), Expect = 3e-27
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
RGKFKEICERPNGSC+DFCLETEIHVGRCLNSRPCCLPLGHQPRIESTT KKD
Sbjct: 31 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTPKKD 83
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 116 bits (291), Expect = 3e-27
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
RGKFKEICERPNGSC+DFCLETEIHVGRCLNSRPCCLPLGHQPRIESTT KKD
Sbjct: 31 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTPKKD 83
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 116 bits (291), Expect = 3e-27
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
RGKFKEICERPNGSC+DFCLETEIHVGRCLNSRPCCLPLGHQPRIESTT KKD
Sbjct: 21 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTPKKD 73
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 115 bits (287), Expect = 1e-26
Identities = 50/53 (94%), Positives = 52/53 (98%)
Query: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
RGKFKEICERPNGSC+DFCLETEIHVGRCLNS+PCCLPLGHQPRIESTT KKD
Sbjct: 21 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQPRIESTTPKKD 73
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 55 SKITRGKFK-EICERPN-GSCQDFCLETEIHVGRCLNSRPCCLPL 97
+++T+G F+ + C + N G C+ CL+TE ++ C N CC+ +
Sbjct: 15 TRVTKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCISI 59
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 37 LSTISCALIKEDGNKEANSKITRGKFKEI---CERPNGSCQDFCLETEIHVGRCLNSRPC 93
L TI+ +I + GK +E CE G C++ C E EI C N + C
Sbjct: 8 LMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPNDQKC 67
Query: 94 CLPL 97
CL L
Sbjct: 68 CLKL 71
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQP 101
R +FK C + G+CQ +C E ++ C ++ CCL +P
Sbjct: 21 RSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
>gi|5730124 zinc finger protein 217 [Homo sapiens]
Length = 1048
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 14 PESESLKFRC----GLFSTF-FWKIKWKLSTISCALIKEDGNKEANSKITRGKFKEICER 68
PE+ RC F+TF W++ K C +KE G + + KE+ E
Sbjct: 277 PETGKKPVRCIPQLDPFTTFQAWQLATKGKVAICQEVKESGQEGSTDNDDSSSEKELGET 336
Query: 69 PNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHK 109
GSC E E +C +S + P++ S+ K
Sbjct: 337 NKGSCAGLSQEKE----KCKHSHGEAPSVDADPKLPSSKEK 373
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 31.2 bits (69), Expect = 0.19
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 66 CERPNGSCQDFCLETEIHVGRCLNSR-PCCL 95
C R G CQ++C E VG C + CCL
Sbjct: 82 CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 65 ICERPNGSCQDFCLETEIHVGRCLNSRPCCL 95
IC C+ C E +GRC N+ CCL
Sbjct: 29 ICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 65 ICERPNGSCQDFCLETEIHVGRCLNSRPCCL 95
IC C+ C E +GRC N+ CCL
Sbjct: 29 ICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 64 EICERPNGSCQDFCLETEIHVGRCLNSR-PCCL 95
E CE+ G C+ FC + E G C+ R CC+
Sbjct: 30 ERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
>gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo
sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 49 GNKEANSKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTH 108
GN A S+ ++E C + S +D C +T G C + C L L + R + H
Sbjct: 78 GNSTAGSEPESSSYRENCRKRKMSSKDSCQDT---AGNC-PEKECSLSLNKKSRSSTAVH 133
Query: 109 KKD 111
+
Sbjct: 134 NSE 136
>gi|52353320 FSHD region gene 2 [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 49 GNKEANSKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTH 108
GN A S+ ++E C + S +D C +T G C + C L L + R + H
Sbjct: 78 GNSTAGSEPESSSYRENCRKRKMSSKDSCQDT---AGNC-PEKECSLSLNKKSRSSTAVH 133
Query: 109 KKD 111
+
Sbjct: 134 NSE 136
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 49 GNKEANSKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTH 108
GN A S+ ++E C + S +D C +T G C + C L L + R + H
Sbjct: 78 GNSTAGSEPESSSYRENCRKRKMSSKDSCQDT---AGNC-PEKECSLSLNKKSRSSTPVH 133
Query: 109 KKD 111
+
Sbjct: 134 NSE 136
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 28.9 bits (63), Expect = 0.92
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 66 CERPNGSCQDFCLETEIHVGRCLN-SRPCCL 95
C NG C++ C E EI + C+ CCL
Sbjct: 35 CRIGNGQCKNQCHENEIRIAYCIRPGTHCCL 65
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 0.92
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 66 CERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPR 102
C +G C+ C + E C N R CC+P R
Sbjct: 27 CWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSNEDHR 63
>gi|56549093 B-cell receptor-associated protein BAP29 isoform a
[Homo sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 26 FSTFFWKIKWKLSTISCALIKEDGNKEANSKITRGKFKEICERPNGSCQDFCLETE 81
FS FFW + +L T+ L KE NK G K E N + + F E E
Sbjct: 109 FSLFFWLVLRRLVTLITQLAKELSNK--------GVLKTQAENTNKAAKKFMEENE 156
>gi|56549091 B-cell receptor-associated protein BAP29 isoform b
[Homo sapiens]
Length = 241
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 26 FSTFFWKIKWKLSTISCALIKEDGNKEANSKITRGKFKEICERPNGSCQDFCLETE 81
FS FFW + +L T+ L KE NK G K E N + + F E E
Sbjct: 109 FSLFFWLVLRRLVTLITQLAKELSNK--------GVLKTQAENTNKAAKKFMEENE 156
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 62 FKEICERPNGSCQDFCLETEIHVGRCLNSRPCC 94
F E C + G+C++ C + E + C S CC
Sbjct: 22 FDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 70 NGSCQDFCLETEIHVGRCLNSRPCCLP 96
+G C+ C + E + RC N + CC+P
Sbjct: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 62 FKEICERPNGSCQDFCLETEIHVGRCLNSRPCC 94
F E C + G+C++ C + E + C S CC
Sbjct: 22 FDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 57 ITRGKFK-EICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIE 104
+ R FK ++CE CQ E +H G C +R CLP PR +
Sbjct: 4130 LCRDGFKGDLCEHEENPCQ--LREPCLHGGTCQGTRCLCLPGFSGPRCQ 4176
>gi|239743215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 46 KEDGNKEANSKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGH--QPRI 103
KE+G KE + R K + RP + Q LE+E G C + P P GH ++
Sbjct: 213 KEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPGNCGVTAP---PGGHIWLKQV 269
Query: 104 ESTTH 108
E TH
Sbjct: 270 EVQTH 274
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 64 EICERPNGSCQDFCLETEIHVGRCLNSRPCC 94
E C+ G C+ CLE E G C + CC
Sbjct: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 55 SKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPR 102
S++T G + C G C+ C + E C+N++ CC+ +QP+
Sbjct: 15 SQLTPGGTQR-CWNLYGKCRYRCSKKERVYVYCINNKMCCVKPKYQPK 61
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 64 EICERPNGSCQDFCLETEIHVGRCLNSRPCC 94
E C+ G C+ CLE E G C + CC
Sbjct: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
Length = 200
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 23 CGLFSTFFWKIKWKLSTISCALIKEDGNKEANSKITRGKFKE 64
CG +W+ L ISC + ++ G+ E +S+ + +E
Sbjct: 107 CGACIIAYWRYGSWLGAISCPICRQTGSSEKSSRASEQTHQE 148
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 49 GNKEANSKITRGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTH 108
GN A S+ ++E C + S +D C + G C C L L + R + H
Sbjct: 79 GNSTAGSEPESSSYRENCRKRKISSKDSCQD---RAGNC-PEEECSLTLNKKSRSSTAVH 134
Query: 109 KKD 111
+
Sbjct: 135 NSE 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,089,824
Number of Sequences: 37866
Number of extensions: 211120
Number of successful extensions: 435
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 39
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.