Guide to the Human Genome
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Search of human proteins with 239748970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
sapiens]
         (290 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]           598   e-171
gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo ...   598   e-171
gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo ...   596   e-171
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ...    39   0.004
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]        37   0.016
gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3...    37   0.020
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]            35   0.10 
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]         34   0.13 
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]           34   0.13 
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]               34   0.17 
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]            34   0.17 
gi|12597625 activating transcription factor 5 [Homo sapiens]           33   0.22 
gi|58530845 zyxin [Homo sapiens]                                       33   0.22 
gi|4508047 zyxin [Homo sapiens]                                        33   0.22 
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    33   0.22 
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    33   0.22 
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]           33   0.38 
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ...    33   0.38 
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ...    33   0.38 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.38 
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]            32   0.50 
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    32   0.65 
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    32   0.65 
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    32   0.65 
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    32   0.65 
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    32   0.65 
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    32   0.65 
gi|239756193 PREDICTED: hypothetical protein [Homo sapiens]            32   0.85 
gi|239750725 PREDICTED: hypothetical protein XP_002347492 [Homo ...    32   0.85 
gi|239745029 PREDICTED: hypothetical protein XP_002343302 [Homo ...    32   0.85 

>gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 290

 Score =  598 bits (1543), Expect = e-171
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
           MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1   MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60

Query: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
           VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120

Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
           KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180

Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
           EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240

Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
           ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290


>gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
           sapiens]
          Length = 290

 Score =  598 bits (1543), Expect = e-171
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
           MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1   MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60

Query: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
           VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120

Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
           KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180

Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
           EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240

Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
           ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290


>gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo
           sapiens]
          Length = 290

 Score =  596 bits (1537), Expect = e-171
 Identities = 289/290 (99%), Positives = 289/290 (99%)

Query: 1   MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
           MK VVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1   MKSVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60

Query: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
           VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61  VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120

Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
           KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180

Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
           EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240

Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
           ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290


>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
            sapiens]
          Length = 3258

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 25/223 (11%)

Query: 29   EFSSCRIGAIVSNLINQTYVKSIVQKQLKSLEVVNLSVNWKEGGPAQPAQTQRSKACSSK 88
            E  S  + ++VS    + Y+ S + ++  S  V ++SV   E G   P+Q++ +    S+
Sbjct: 2973 ENDSISMPSVVSE--QEAYLLSAIGRRRFSSHVSSMSVPQAEVGML-PSQSEPNVLDDSQ 3029

Query: 89   RLKEARRTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAVWGRNPEPAL 148
             L  A  +L   A  Q     +  +  +    K+G  Q     L+        RN + A 
Sbjct: 3030 GLA-AEGSLSRVASIQSEPGQQNLLVQQPLGRKRGLRQLRRPLLSRQKTQTEPRNRQGA- 3087

Query: 149  RLIPEPADLQRDTHPLARRLHPERDGKEAVR-TEAQNSFPVSPTSKNSSPRRGSLRGCFP 207
            RL      +Q  T P A       D K +V   EAQ     +PT  ++ P  G L+GC P
Sbjct: 3088 RLSTTRRSIQPKTKPSA-------DQKRSVTFIEAQPEPAAAPT--DALPATGQLQGCSP 3138

Query: 208  PPPLRSAPRWPRALQALLLRSPPAVA-----SLQPQLQADFPT 245
             P      R P A+   +L S PA+      S+ P+   +FPT
Sbjct: 3139 AP-----SRKPEAMDEPVLTSSPAIVVADLHSVSPKQSENFPT 3176


>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
          Length = 1564

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 80  QRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAV 139
           ++S   SS   K+ R+T  +A  +  + + R S  ++    KKG    S  P  P   A+
Sbjct: 221 RKSSPKSSSASKKDRKT--SAVSSPLLDQQRNSKTNQS--KKKGPRTPSPPPPIPEDIAL 276

Query: 140 WGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEA---QNSFPVSPTSKNSS 196
            G+  +   ++     +  RD     R    +R+ ++  R+ +   Q+  P+S    +SS
Sbjct: 277 -GKKYKEKYKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSS 335

Query: 197 PRRGSLRGCFPPPPLRS---APRWPRALQALLLRSP---PAVASLQPQLQADFPTHTVPD 250
            + GS      P P R    +P + R L   L RS    P+ +   PQ +   P H  P 
Sbjct: 336 SQSGSSIQRHSPSPRRKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRHRSPM 395

Query: 251 QSKANHSH 258
           + K  H H
Sbjct: 396 REKGRHDH 403


>gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3
           [Homo sapiens]
          Length = 452

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 190 PTSKNSSPRRGSLRGCFPPPPL------RSAPRW------PRALQALLLRSPPAVASLQP 237
           P  KNSSP  G   GC P  P        S P W      P   Q + L++      L  
Sbjct: 2   PWGKNSSPHWGHHLGCLPSAPACRIWRPHSRPAWEPPRPSPLLCQDMALQNALYTGDL-A 60

Query: 238 QLQADFPTHTVPD---QSKANHSHWSDGEIFFW 267
           +LQ  FP H+  D   +S+A    WS  +   W
Sbjct: 61  RLQELFPPHSTADLLLESRAAEPRWSSHQRGLW 93


>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 29/146 (19%)

Query: 95  RTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAVWGRN--PEPALRLIP 152
           RT   A G QR   GR  + S         W     P AP  P    R     P+ R   
Sbjct: 4   RTCFPALGTQRGQAGRCQVIS---------WPRLLPPAAPQPPGQSFRTLGGVPSTRTAH 54

Query: 153 E-PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVS----PTSKNS--------SPRR 199
           + PA    D       L P+ +G  A    A   F  S    P  + S         P+ 
Sbjct: 55  QSPATASEDGV-----LQPKWEGSPAPGLCASQRFRRSCSLPPAGRGSLRGGSNLEKPKS 109

Query: 200 GSLRGCFPPPPLRSAPRWPRALQALL 225
           G + GCFP  P RS   +P  L+ALL
Sbjct: 110 GQVPGCFPGKPRRSPRSFPPVLRALL 135


>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
          Length = 978

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHP---------------ERDGK 175
           PL PG P  +G NP P     P+P        P    L+P               E  G+
Sbjct: 624 PLGPGPPTNYGPNPCPQQASYPDPTQETWGEFPSHSGLYPGPKALGGTYSQCPRLEHYGQ 683

Query: 176 EAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAV--- 232
             V+ + +   PV   S   +P   +     PP P      +P+      L+S P     
Sbjct: 684 --VQVKPEQGCPVGSDSTGLAPCLNAHPSEGPPHPQPLFSHYPQPSPPQYLQSGPYTQPP 741

Query: 233 -----ASLQPQLQADFPTHTVPDQSKAN--HSHWSDGEIFFWPENGPRDSLAGDVIPGSP 285
                +  +P L  D PTH+   Q KA    ++    +   W   G  D+ A +    SP
Sbjct: 742 PDYLPSEPRPCLDFDSPTHST-GQLKAQLVCNYVQSQQELLWEGGGREDAPAQEPSYQSP 800

Query: 286 DF 287
            F
Sbjct: 801 KF 802


>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
          Length = 1106

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHP---------------ERDGK 175
           PL PG P  +G NP P     P+P        P    L+P               E  G+
Sbjct: 752 PLGPGPPTNYGPNPCPQQASYPDPTQETWGEFPSHSGLYPGPKALGGTYSQCPRLEHYGQ 811

Query: 176 EAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAV--- 232
             V+ + +   PV   S   +P   +     PP P      +P+      L+S P     
Sbjct: 812 --VQVKPEQGCPVGSDSTGLAPCLNAHPSEGPPHPQPLFSHYPQPSPPQYLQSGPYTQPP 869

Query: 233 -----ASLQPQLQADFPTHTVPDQSKAN--HSHWSDGEIFFWPENGPRDSLAGDVIPGSP 285
                +  +P L  D PTH+   Q KA    ++    +   W   G  D+ A +    SP
Sbjct: 870 PDYLPSEPRPCLDFDSPTHST-GQLKAQLVCNYVQSQQELLWEGGGREDAPAQEPSYQSP 928

Query: 286 DF 287
            F
Sbjct: 929 KF 930


>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
          Length = 895

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 145 EPALRLIPEPAD--LQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSL 202
           EP  R++P P    +   T  +A  +     GK  V    + +   +PT     P R S 
Sbjct: 333 EPPSRIVPTPTSPAIAPPTETMAPPVRDPVPGKPTVTIRTRGAIIQTPTLGPIQPTRVSE 392

Query: 203 RGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQS 252
            G   P  +R     P  ++   + +PP   + +P++    P     D +
Sbjct: 393 AGTTVPGQIRPTMTIPGYVEPTAVATPPTTTTKKPRVSTPKPATPSTDST 442


>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
          Length = 1352

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 191 TSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVAS 234
           +S+ ++P RG LR CFPP P  +AP  P         +PPA A+
Sbjct: 79  SSEGAAPDRGGLRSCFPPGP-AAAPTPPPCPPPPASPAPPACAA 121


>gi|12597625 activating transcription factor 5 [Homo sapiens]
          Length = 282

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 23/105 (21%)

Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSP 190
           PL P  P   G  P+P+    P P DL+     +A  L  E +  E    +A    P SP
Sbjct: 78  PLEPPLPP--GTLPQPS----PTPPDLEA----MASLLKKELEQMEDFFLDAPPLPPPSP 127

Query: 191 TSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASL 235
                           PPPPL  AP  P +L +  L  PP + +L
Sbjct: 128 PP-------------LPPPPLPPAPSLPLSLPSFDLPQPPVLDTL 159


>gi|58530845 zyxin [Homo sapiens]
          Length = 572

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 154 PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRS 213
           P D +    P A+R    R G+           P  P + +     G+L G FPPPP   
Sbjct: 41  PGDSEPPPAPGAQRAQMGRVGEIPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPI 100

Query: 214 APRWPRA-LQALLLRSPPAVASLQPQLQADFPTHTVP 249
              +P A L+  +  SPP     +   +A  P    P
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQP 137


>gi|4508047 zyxin [Homo sapiens]
          Length = 572

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 154 PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRS 213
           P D +    P A+R    R G+           P  P + +     G+L G FPPPP   
Sbjct: 41  PGDSEPPPAPGAQRAQMGRVGEIPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPI 100

Query: 214 APRWPRA-LQALLLRSPPAVASLQPQLQADFPTHTVP 249
              +P A L+  +  SPP     +   +A  P    P
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQP 137


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPL--RSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  P  + S PRR       PPPP+  RS PR  R  ++   RSP 
Sbjct: 229 DGQEITATAVLAPWPRPPPRRFSPPRR-----MLPPPPMWRRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPL--RSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  P  + S PRR       PPPP+  RS PR  R  ++   RSP 
Sbjct: 229 DGQEITATAVLAPWPRPPPRRFSPPRR-----MLPPPPMWRRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
          Length = 388

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
           W+ S A  +P  PA W R+    L     P DL+   HP   R HPE  G  +   EA +
Sbjct: 3   WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51

Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
           ++  +P   +S PR  R S + C
Sbjct: 52  AWVQNPGPPDSEPRSSRASAQTC 74


>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
           sapiens]
          Length = 388

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
           W+ S A  +P  PA W R+    L     P DL+   HP   R HPE  G  +   EA +
Sbjct: 3   WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51

Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
           ++  +P   +S PR  R S + C
Sbjct: 52  AWVQNPGPPDSEPRSSRASAQTC 74


>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
           sapiens]
          Length = 388

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
           W+ S A  +P  PA W R+    L     P DL+   HP   R HPE  G  +   EA +
Sbjct: 3   WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51

Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
           ++  +P   +S PR  R S + C
Sbjct: 52  AWVQNPGPPDSEPRSSRASAQTC 74


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 59/266 (22%), Positives = 95/266 (35%), Gaps = 72/266 (27%)

Query: 80  QRSKACSSKRLKEAR------RTLKN--AAGNQRVSKGRASIWSEGCKAKKGCWQASCAP 131
           +RS++ SS  +K++R      R+L +  +    R+S  R+   S  C  +K       + 
Sbjct: 739 RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSR 798

Query: 132 LAPGFPAVWGRNPEPALRLIPEPADLQRDT------------HPLARRLHPERDG----- 174
                P    R P    R    P   Q+              HP  +   P R G     
Sbjct: 799 SGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSP 858

Query: 175 ---KEAVRTEAQNSFPVSPTS--KNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSP 229
              +++V  + ++ F  SP    K+ +P R S  G  PP    S P  PR       +SP
Sbjct: 859 QANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTP--PR-------QSP 909

Query: 230 PAVASLQPQLQADFP------------------THTVPDQSKA---------------NH 256
              +S QP+++A                     + T P +S++               +H
Sbjct: 910 SRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSH 969

Query: 257 SHWSDGEIFFWPENGPRDSLAGDVIP 282
           S  S  +    PE  PR S +G + P
Sbjct: 970 SGSSSPDTKVKPETPPRQSHSGSISP 995


>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 192 SKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALL 225
           S    P+ G + GCFP  P RS   +P  L+ALL
Sbjct: 102 SNLEKPKSGQVPGCFPGKPRRSPRSFPPVLRALL 135


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
           DG+E   T     +P  PT +  SP R  L    PPPP  LRS PR  R  ++   RSP 
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283

Query: 231 AVASLQP 237
              S  P
Sbjct: 284 RRRSRSP 290


>gi|239756193 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
           P RGS+RGC   P L S+     A +  LL  PP+     P L  +F TH V  Q  A  
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152

Query: 257 SHW 259
           S W
Sbjct: 153 SGW 155


>gi|239750725 PREDICTED: hypothetical protein XP_002347492 [Homo
           sapiens]
          Length = 182

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
           P RGS+RGC   P L S+     A +  LL  PP+     P L  +F TH V  Q  A  
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152

Query: 257 SHW 259
           S W
Sbjct: 153 SGW 155


>gi|239745029 PREDICTED: hypothetical protein XP_002343302 [Homo
           sapiens]
          Length = 182

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
           P RGS+RGC   P L S+     A +  LL  PP+     P L  +F TH V  Q  A  
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152

Query: 257 SHW 259
           S W
Sbjct: 153 SGW 155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,373,680
Number of Sequences: 37866
Number of extensions: 694718
Number of successful extensions: 3044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 205
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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