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Search of human proteins with 239748970
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754392 PREDICTED: hypothetical protein [Homo sapiens] 598 e-171
gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo ... 598 e-171
gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo ... 596 e-171
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 39 0.004
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 37 0.016
gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3... 37 0.020
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens] 35 0.10
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 34 0.13
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 34 0.13
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 34 0.17
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 34 0.17
gi|12597625 activating transcription factor 5 [Homo sapiens] 33 0.22
gi|58530845 zyxin [Homo sapiens] 33 0.22
gi|4508047 zyxin [Homo sapiens] 33 0.22
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 33 0.22
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 33 0.22
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens] 33 0.38
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ... 33 0.38
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ... 33 0.38
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.38
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 32 0.50
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 32 0.65
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 32 0.65
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 32 0.65
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 32 0.65
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 32 0.65
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 32 0.65
gi|239756193 PREDICTED: hypothetical protein [Homo sapiens] 32 0.85
gi|239750725 PREDICTED: hypothetical protein XP_002347492 [Homo ... 32 0.85
gi|239745029 PREDICTED: hypothetical protein XP_002343302 [Homo ... 32 0.85
>gi|239754392 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 598 bits (1543), Expect = e-171
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1 MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
Query: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
>gi|239748970 PREDICTED: hypothetical protein XP_002346871 [Homo
sapiens]
Length = 290
Score = 598 bits (1543), Expect = e-171
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1 MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
Query: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
>gi|239742992 PREDICTED: hypothetical protein XP_002342713 [Homo
sapiens]
Length = 290
Score = 596 bits (1537), Expect = e-171
Identities = 289/290 (99%), Positives = 289/290 (99%)
Query: 1 MKLVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
MK VVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE
Sbjct: 1 MKSVVVSILKIQIQKIWRCKLWIVEFATEFSSCRIGAIVSNLINQTYVKSIVQKQLKSLE 60
Query: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA
Sbjct: 61 VVNLSVNWKEGGPAQPAQTQRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKA 120
Query: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT
Sbjct: 121 KKGCWQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRT 180
Query: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ
Sbjct: 181 EAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQ 240
Query: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP
Sbjct: 241 ADFPTHTVPDQSKANHSHWSDGEIFFWPENGPRDSLAGDVIPGSPDFSLP 290
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 39.3 bits (90), Expect = 0.004
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Query: 29 EFSSCRIGAIVSNLINQTYVKSIVQKQLKSLEVVNLSVNWKEGGPAQPAQTQRSKACSSK 88
E S + ++VS + Y+ S + ++ S V ++SV E G P+Q++ + S+
Sbjct: 2973 ENDSISMPSVVSE--QEAYLLSAIGRRRFSSHVSSMSVPQAEVGML-PSQSEPNVLDDSQ 3029
Query: 89 RLKEARRTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAVWGRNPEPAL 148
L A +L A Q + + + K+G Q L+ RN + A
Sbjct: 3030 GLA-AEGSLSRVASIQSEPGQQNLLVQQPLGRKRGLRQLRRPLLSRQKTQTEPRNRQGA- 3087
Query: 149 RLIPEPADLQRDTHPLARRLHPERDGKEAVR-TEAQNSFPVSPTSKNSSPRRGSLRGCFP 207
RL +Q T P A D K +V EAQ +PT ++ P G L+GC P
Sbjct: 3088 RLSTTRRSIQPKTKPSA-------DQKRSVTFIEAQPEPAAAPT--DALPATGQLQGCSP 3138
Query: 208 PPPLRSAPRWPRALQALLLRSPPAVA-----SLQPQLQADFPT 245
P R P A+ +L S PA+ S+ P+ +FPT
Sbjct: 3139 AP-----SRKPEAMDEPVLTSSPAIVVADLHSVSPKQSENFPT 3176
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 37.4 bits (85), Expect = 0.016
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 14/188 (7%)
Query: 80 QRSKACSSKRLKEARRTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAV 139
++S SS K+ R+T +A + + + R S ++ KKG S P P A+
Sbjct: 221 RKSSPKSSSASKKDRKT--SAVSSPLLDQQRNSKTNQS--KKKGPRTPSPPPPIPEDIAL 276
Query: 140 WGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEA---QNSFPVSPTSKNSS 196
G+ + ++ + RD R +R+ ++ R+ + Q+ P+S +SS
Sbjct: 277 -GKKYKEKYKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSS 335
Query: 197 PRRGSLRGCFPPPPLRS---APRWPRALQALLLRSP---PAVASLQPQLQADFPTHTVPD 250
+ GS P P R +P + R L L RS P+ + PQ + P H P
Sbjct: 336 SQSGSSIQRHSPSPRRKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRHRSPM 395
Query: 251 QSKANHSH 258
+ K H H
Sbjct: 396 REKGRHDH 403
>gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3
[Homo sapiens]
Length = 452
Score = 37.0 bits (84), Expect = 0.020
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 190 PTSKNSSPRRGSLRGCFPPPPL------RSAPRW------PRALQALLLRSPPAVASLQP 237
P KNSSP G GC P P S P W P Q + L++ L
Sbjct: 2 PWGKNSSPHWGHHLGCLPSAPACRIWRPHSRPAWEPPRPSPLLCQDMALQNALYTGDL-A 60
Query: 238 QLQADFPTHTVPD---QSKANHSHWSDGEIFFW 267
+LQ FP H+ D +S+A WS + W
Sbjct: 61 RLQELFPPHSTADLLLESRAAEPRWSSHQRGLW 93
>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 34.7 bits (78), Expect = 0.10
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 29/146 (19%)
Query: 95 RTLKNAAGNQRVSKGRASIWSEGCKAKKGCWQASCAPLAPGFPAVWGRN--PEPALRLIP 152
RT A G QR GR + S W P AP P R P+ R
Sbjct: 4 RTCFPALGTQRGQAGRCQVIS---------WPRLLPPAAPQPPGQSFRTLGGVPSTRTAH 54
Query: 153 E-PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVS----PTSKNS--------SPRR 199
+ PA D L P+ +G A A F S P + S P+
Sbjct: 55 QSPATASEDGV-----LQPKWEGSPAPGLCASQRFRRSCSLPPAGRGSLRGGSNLEKPKS 109
Query: 200 GSLRGCFPPPPLRSAPRWPRALQALL 225
G + GCFP P RS +P L+ALL
Sbjct: 110 GQVPGCFPGKPRRSPRSFPPVLRALL 135
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 34.3 bits (77), Expect = 0.13
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 28/182 (15%)
Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHP---------------ERDGK 175
PL PG P +G NP P P+P P L+P E G+
Sbjct: 624 PLGPGPPTNYGPNPCPQQASYPDPTQETWGEFPSHSGLYPGPKALGGTYSQCPRLEHYGQ 683
Query: 176 EAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAV--- 232
V+ + + PV S +P + PP P +P+ L+S P
Sbjct: 684 --VQVKPEQGCPVGSDSTGLAPCLNAHPSEGPPHPQPLFSHYPQPSPPQYLQSGPYTQPP 741
Query: 233 -----ASLQPQLQADFPTHTVPDQSKAN--HSHWSDGEIFFWPENGPRDSLAGDVIPGSP 285
+ +P L D PTH+ Q KA ++ + W G D+ A + SP
Sbjct: 742 PDYLPSEPRPCLDFDSPTHST-GQLKAQLVCNYVQSQQELLWEGGGREDAPAQEPSYQSP 800
Query: 286 DF 287
F
Sbjct: 801 KF 802
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 34.3 bits (77), Expect = 0.13
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 28/182 (15%)
Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHP---------------ERDGK 175
PL PG P +G NP P P+P P L+P E G+
Sbjct: 752 PLGPGPPTNYGPNPCPQQASYPDPTQETWGEFPSHSGLYPGPKALGGTYSQCPRLEHYGQ 811
Query: 176 EAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAV--- 232
V+ + + PV S +P + PP P +P+ L+S P
Sbjct: 812 --VQVKPEQGCPVGSDSTGLAPCLNAHPSEGPPHPQPLFSHYPQPSPPQYLQSGPYTQPP 869
Query: 233 -----ASLQPQLQADFPTHTVPDQSKAN--HSHWSDGEIFFWPENGPRDSLAGDVIPGSP 285
+ +P L D PTH+ Q KA ++ + W G D+ A + SP
Sbjct: 870 PDYLPSEPRPCLDFDSPTHST-GQLKAQLVCNYVQSQQELLWEGGGREDAPAQEPSYQSP 928
Query: 286 DF 287
F
Sbjct: 929 KF 930
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 33.9 bits (76), Expect = 0.17
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
Query: 145 EPALRLIPEPAD--LQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSL 202
EP R++P P + T +A + GK V + + +PT P R S
Sbjct: 333 EPPSRIVPTPTSPAIAPPTETMAPPVRDPVPGKPTVTIRTRGAIIQTPTLGPIQPTRVSE 392
Query: 203 RGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQS 252
G P +R P ++ + +PP + +P++ P D +
Sbjct: 393 AGTTVPGQIRPTMTIPGYVEPTAVATPPTTTTKKPRVSTPKPATPSTDST 442
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 33.9 bits (76), Expect = 0.17
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 191 TSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVAS 234
+S+ ++P RG LR CFPP P +AP P +PPA A+
Sbjct: 79 SSEGAAPDRGGLRSCFPPGP-AAAPTPPPCPPPPASPAPPACAA 121
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 33.5 bits (75), Expect = 0.22
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 131 PLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSP 190
PL P P G P+P+ P P DL+ +A L E + E +A P SP
Sbjct: 78 PLEPPLPP--GTLPQPS----PTPPDLEA----MASLLKKELEQMEDFFLDAPPLPPPSP 127
Query: 191 TSKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASL 235
PPPPL AP P +L + L PP + +L
Sbjct: 128 PP-------------LPPPPLPPAPSLPLSLPSFDLPQPPVLDTL 159
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 154 PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRS 213
P D + P A+R R G+ P P + + G+L G FPPPP
Sbjct: 41 PGDSEPPPAPGAQRAQMGRVGEIPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPI 100
Query: 214 APRWPRA-LQALLLRSPPAVASLQPQLQADFPTHTVP 249
+P A L+ + SPP + +A P P
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQP 137
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 154 PADLQRDTHPLARRLHPERDGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPLRS 213
P D + P A+R R G+ P P + + G+L G FPPPP
Sbjct: 41 PGDSEPPPAPGAQRAQMGRVGEIPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPI 100
Query: 214 APRWPRA-LQALLLRSPPAVASLQPQLQADFPTHTVP 249
+P A L+ + SPP + +A P P
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQP 137
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPL--RSAPRWPRALQALLLRSPP 230
DG+E T +P P + S PRR PPPP+ RS PR R ++ RSP
Sbjct: 229 DGQEITATAVLAPWPRPPPRRFSPPRR-----MLPPPPMWRRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPPL--RSAPRWPRALQALLLRSPP 230
DG+E T +P P + S PRR PPPP+ RS PR R ++ RSP
Sbjct: 229 DGQEITATAVLAPWPRPPPRRFSPPRR-----MLPPPPMWRRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
Length = 388
Score = 32.7 bits (73), Expect = 0.38
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
W+ S A +P PA W R+ L P DL+ HP R HPE G + EA +
Sbjct: 3 WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51
Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
++ +P +S PR R S + C
Sbjct: 52 AWVQNPGPPDSEPRSSRASAQTC 74
>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
sapiens]
Length = 388
Score = 32.7 bits (73), Expect = 0.38
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
W+ S A +P PA W R+ L P DL+ HP R HPE G + EA +
Sbjct: 3 WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51
Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
++ +P +S PR R S + C
Sbjct: 52 AWVQNPGPPDSEPRSSRASAQTC 74
>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
sapiens]
Length = 388
Score = 32.7 bits (73), Expect = 0.38
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 125 WQASCAPLAPGFPAVWGRNPEPALRLIPEPADLQRDTHPLARRLHPERDGKEAVRTEAQN 184
W+ S A +P PA W R+ L P DL+ HP R HPE G + EA +
Sbjct: 3 WRRSAALRSPRAPAGWARDAGLGL----SPRDLE---HP---RDHPEASGGHSADEEA-D 51
Query: 185 SFPVSPTSKNSSPR--RGSLRGC 205
++ +P +S PR R S + C
Sbjct: 52 AWVQNPGPPDSEPRSSRASAQTC 74
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.38
Identities = 59/266 (22%), Positives = 95/266 (35%), Gaps = 72/266 (27%)
Query: 80 QRSKACSSKRLKEAR------RTLKN--AAGNQRVSKGRASIWSEGCKAKKGCWQASCAP 131
+RS++ SS +K++R R+L + + R+S R+ S C +K +
Sbjct: 739 RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSR 798
Query: 132 LAPGFPAVWGRNPEPALRLIPEPADLQRDT------------HPLARRLHPERDG----- 174
P R P R P Q+ HP + P R G
Sbjct: 799 SGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSP 858
Query: 175 ---KEAVRTEAQNSFPVSPTS--KNSSPRRGSLRGCFPPPPLRSAPRWPRALQALLLRSP 229
+++V + ++ F SP K+ +P R S G PP S P PR +SP
Sbjct: 859 QANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTP--PR-------QSP 909
Query: 230 PAVASLQPQLQADFP------------------THTVPDQSKA---------------NH 256
+S QP+++A + T P +S++ +H
Sbjct: 910 SRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSH 969
Query: 257 SHWSDGEIFFWPENGPRDSLAGDVIP 282
S S + PE PR S +G + P
Sbjct: 970 SGSSSPDTKVKPETPPRQSHSGSISP 995
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 32.3 bits (72), Expect = 0.50
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 192 SKNSSPRRGSLRGCFPPPPLRSAPRWPRALQALL 225
S P+ G + GCFP P RS +P L+ALL
Sbjct: 102 SNLEKPKSGQVPGCFPGKPRRSPRSFPPVLRALL 135
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.65
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 DGKEAVRTEAQNSFPVSPTSKNSSPRRGSLRGCFPPPP--LRSAPRWPRALQALLLRSPP 230
DG+E T +P PT + SP R L PPPP LRS PR R ++ RSP
Sbjct: 229 DGQEITATVVLAPWP-RPTPRRFSPPRRML----PPPPMWLRSPPRMRRRSRSPRRRSPV 283
Query: 231 AVASLQP 237
S P
Sbjct: 284 RRRSRSP 290
>gi|239756193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 31.6 bits (70), Expect = 0.85
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
P RGS+RGC P L S+ A + LL PP+ P L +F TH V Q A
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152
Query: 257 SHW 259
S W
Sbjct: 153 SGW 155
>gi|239750725 PREDICTED: hypothetical protein XP_002347492 [Homo
sapiens]
Length = 182
Score = 31.6 bits (70), Expect = 0.85
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
P RGS+RGC P L S+ A + LL PP+ P L +F TH V Q A
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152
Query: 257 SHW 259
S W
Sbjct: 153 SGW 155
>gi|239745029 PREDICTED: hypothetical protein XP_002343302 [Homo
sapiens]
Length = 182
Score = 31.6 bits (70), Expect = 0.85
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 197 PRRGSLRGCFPPPPLRSAPRWPRALQALLLRSPPAVASLQPQLQADFPTHTVPDQSKANH 256
P RGS+RGC P L S+ A + LL PP+ P L +F TH V Q A
Sbjct: 102 PTRGSMRGC---PFLGSS-----AAKCSLLLRPPSRGEASPWL-PEFMTHPVHHQQLACV 152
Query: 257 SHW 259
S W
Sbjct: 153 SGW 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,373,680
Number of Sequences: 37866
Number of extensions: 694718
Number of successful extensions: 3044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 205
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.