Guide to the Human Genome
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Name: LOC100288144 Sequence: fasta or formatted (182aa) NCBI GI: 239745029
Description:

PREDICTED: hypothetical protein XP_002343302

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         14           2
 C cysteine            5.5         10           1
 D aspartate           0.5          1           1
 E glutamate           3.8          7           2
 F phenylalanine       2.2          4           1
 G glycine            12.6         23           2
 H histidine           4.4          8           2
 I isoleucine          1.1          2           1
 K lysine              1.6          3           1
 L leucine            10.4         19           3
 M methionine          2.2          4           1
 N asparagine          0.5          1           1
 P proline            11.5         21           2
 Q glutamine           1.6          3           2
 R arginine            9.9         18           3
 S serine              8.8         16           2
 T threonine           4.4          8           1
 V valine              6.6         12           1
 W tryptophan          4.4          8           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343302 
LOC100293953          1.000   PREDICTED: hypothetical protein 
LOC100290158          1.000   PREDICTED: hypothetical protein XP_002347492 
LOC100291136          0.021   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.021   PREDICTED: hypothetical protein XP_002343480 
KIAA1305              0.021   hypothetical protein LOC57523 
LOC100293295          0.019   PREDICTED: hypothetical protein 
LOC100291624          0.019   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.019   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.019   PREDICTED: hypothetical protein XP_002342583 
LOC100293985          0.019   PREDICTED: hypothetical protein 
LOC100289986          0.019   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.019   PREDICTED: hypothetical protein XP_002342502 
LOC100292712          0.019   PREDICTED: hypothetical protein 
LOC100292745          0.019   PREDICTED: hypothetical protein 
LOC100291454          0.019   PREDICTED: hypothetical protein XP_002346871 
LOC100290074          0.019   PREDICTED: hypothetical protein XP_002346855 
LOC100288120          0.019   PREDICTED: hypothetical protein XP_002342713 
LOC100287034          0.019   PREDICTED: hypothetical protein XP_002342693 
LOC100291076          0.016   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.016   PREDICTED: hypothetical protein XP_002343630 
LOC375295             0.013   PREDICTED: hypothetical protein LOC375295 
LOC100133655          0.013   PREDICTED: hypothetical protein 
LOC375295             0.013   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.013   PREDICTED: hypothetical protein 
FLJ37078              0.013   hypothetical protein LOC222183 
PLEKHN1               0.011   pleckstrin homology domain containing, family N mem...
DVL2                  0.011   dishevelled 2 
ALDH6A1               0.011   aldehyde dehydrogenase 6A1 precursor 
AKAP1                 0.011   A-kinase anchor protein 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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