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Search of human proteins with 239748892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748892 PREDICTED: hypothetical protein XP_002346886 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754344 PREDICTED: similar to hCG2031160 [Homo sapiens] 350 3e-97
gi|239748892 PREDICTED: hypothetical protein XP_002346886 [Homo ... 350 3e-97
gi|239742916 PREDICTED: hypothetical protein XP_002342690 [Homo ... 350 3e-97
gi|169217383 PREDICTED: similar to coiled-coil domain containing... 28 3.2
gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo sapi... 28 3.2
gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo sapi... 28 3.2
gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo ... 28 4.2
gi|149363632 coiled-coil domain containing 29 [Homo sapiens] 28 4.2
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens] 28 5.4
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 28 5.4
gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo... 28 5.4
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi... 28 5.4
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 28 5.4
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 28 5.4
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 27 7.1
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 27 7.1
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 27 7.1
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 27 7.1
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 27 9.3
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 27 9.3
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 27 9.3
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 27 9.3
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 27 9.3
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 9.3
gi|81295809 pericentrin [Homo sapiens] 27 9.3
gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo sa... 27 9.3
>gi|239754344 PREDICTED: similar to hCG2031160 [Homo sapiens]
Length = 177
Score = 350 bits (899), Expect = 3e-97
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF
Sbjct: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
Query: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA
Sbjct: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
Query: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG
Sbjct: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
>gi|239748892 PREDICTED: hypothetical protein XP_002346886 [Homo
sapiens]
Length = 177
Score = 350 bits (899), Expect = 3e-97
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF
Sbjct: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
Query: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA
Sbjct: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
Query: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG
Sbjct: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
>gi|239742916 PREDICTED: hypothetical protein XP_002342690 [Homo
sapiens]
Length = 177
Score = 350 bits (899), Expect = 3e-97
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF
Sbjct: 1 MACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAF 60
Query: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA
Sbjct: 61 KVFNNREETARRQRISELQMLASAIRQTPAALPTCKNFKASKRNIQQPLWDFASSDENLA 120
Query: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG
Sbjct: 121 TGPRNACSLGFLLSHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSPRLGG 177
>gi|169217383 PREDICTED: similar to coiled-coil domain containing 29
[Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 33 SVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRIS---------------- 76
S+ +++ +KLE ++ ++E++NL + NN E ++ Q
Sbjct: 68 SMKKVQQECEKLEEDKKMLEEEILNLKTHMENNMVELSKLQEYKSETDERAIQAVEKLEE 127
Query: 77 -ELQMLASAIRQ-------TPAALPTCKNFKASKRNIQQP 108
LQM A + Q T A L TC + +S + +P
Sbjct: 128 IHLQMEADCVEQIIRETKRTVAVLDTCSHLLSSLESTGKP 167
>gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo
sapiens]
Length = 543
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 29 FITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETA 70
FI +SD KK+ G IP Q L N+A+ + +REE A
Sbjct: 355 FIKYVLSDKEKKV----FGIVIPMQVLANVAYIIIESREEGA 392
>gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo
sapiens]
Length = 301
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 29 FITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETA 70
FI +SD KK+ G IP Q L N+A+ + +REE A
Sbjct: 113 FIKYVLSDKEKKV----FGIVIPMQVLANVAYIIIESREEGA 150
>gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo
sapiens]
Length = 183
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 24 ILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQ 73
+L F+ S+ +++ +KLE ++ ++E++NL + NNR E ++ Q
Sbjct: 83 VLQQEFL--SMKKVQQQCEKLEEDKKMLKEEILNLKTHMENNRVELSKLQ 130
>gi|149363632 coiled-coil domain containing 29 [Homo sapiens]
Length = 161
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 24 ILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQ 73
+L F+ S+ +++ +KLE ++ ++E++NL + NNR E ++ Q
Sbjct: 61 VLQQEFL--SMKKVQQQCEKLEEDKKMLKEEILNLKTHMENNRVEISKLQ 108
>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
Length = 4588
Score = 27.7 bits (60), Expect = 5.4
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 35 SDSRKKLQKLE-SGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAIRQTPAALP 93
SDSR L + GS IP+ F FN R+ ++ + S P P
Sbjct: 4262 SDSRNNLDRNSFEGSAIPEHP----EFSTFNPESVHGHRKAVA----VCSVAPNLPPPPP 4313
Query: 94 TCKNFKASKRNIQQPLWDF 112
+ N + +IQ+P WDF
Sbjct: 4314 S--NSPSDSDSIQKPSWDF 4330
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 27.7 bits (60), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 151 SSPLPELLELKPKAPHRLLPRSP 173
SSP P+ +L P APH PR P
Sbjct: 609 SSPQPQRAQLAPHAPHPSHPRHP 631
>gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo
sapiens]
Length = 1199
Score = 27.7 bits (60), Expect = 5.4
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
Query: 25 LNMHFITQSVSDSRKKLQKLESGSQIPQQ-ELINLAFKVFNNREETARRQRISELQMLAS 83
LN + +SV DS + G PQ + N+A ++ + + + ++R E + L S
Sbjct: 431 LNHNPACESVIDSSAFGEGKAPGPPFPQTLGIANVATRLSSIQLGQSEKERPEEARELDS 490
Query: 84 AIRQTPAAL---PTCKNFKASKRNIQQPLWDFASSDENLATGPRNACSLGFLLSHAPPVR 140
+ R +A P + ++ + L D S DEN + CS +S + V
Sbjct: 491 SDRDISSATDLQPDQAETEDTEEELVDGLEDCCSRDENEEEEGDSECSSLSAVSPSESVA 550
Query: 141 ALTGSLTARLSSPLPELLE-LKPKAPHRLLPRSP 173
++ S L+ PL + ++P + L P P
Sbjct: 551 MISRSCMEILTKPLSNHEKVVRPALIYSLFPNVP 584
>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
sapiens]
Length = 765
Score = 27.7 bits (60), Expect = 5.4
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 76 SELQMLASAIRQTPAALPTCKNFKASK----RNIQQPLWDFASSDENLATGPRNACSLGF 131
S L + S ++ + K F K R++ L SDE A G + G
Sbjct: 5 SLLHSVFSCSSPASSSAASAKGFSKRKLRQTRSLDPALIGGCGSDEAGAEGSARGATAGR 64
Query: 132 LLSHAPPVRALTGSLTARLSSPLPELLELKPKAP 165
L S + P +L L + P P L P P
Sbjct: 65 LYSPSLPAESLGPRLASSSRGPPPRATRLPPPGP 98
>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
sapiens]
Length = 974
Score = 27.7 bits (60), Expect = 5.4
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 76 SELQMLASAIRQTPAALPTCKNFKASK----RNIQQPLWDFASSDENLATGPRNACSLGF 131
S L + S ++ + K F K R++ L SDE A G + G
Sbjct: 5 SLLHSVFSCSSPASSSAASAKGFSKRKLRQTRSLDPALIGGCGSDEAGAEGSARGATAGR 64
Query: 132 LLSHAPPVRALTGSLTARLSSPLPELLELKPKAP 165
L S + P +L L + P P L P P
Sbjct: 65 LYSPSLPAESLGPRLASSSRGPPPRATRLPPPGP 98
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 27.7 bits (60), Expect = 5.4
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 39 KKLQKLESGSQIPQQELINLA--FKVFNNREETARRQRISELQMLASAIRQTPAALPTCK 96
K LQ++ S Q P L K NR E I+ L +I TPA P CK
Sbjct: 1026 KFLQEVNSLIQKPSHPLAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPACK 1085
Query: 97 NFKASK---RNIQQPLW 110
+ +K ++QP++
Sbjct: 1086 SASETKVISHAVRQPVF 1102
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 27.3 bits (59), Expect = 7.1
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 68 ETARRQRISELQMLASAIRQTPAALPTCKN-FKASKRNIQQPLWDFASSDENLATGPRNA 126
E+++ + ++ S + +PT N FK K +I D ++ + A P++
Sbjct: 439 ESSQLNKTRSIRRRDSCLNSKTKVMPTPTNQFKIPKFSIGDSP-DSSTPKLSRAQRPQSC 497
Query: 127 CSLGFLLSHAPPVRALTGS-----LTARLSSPLP 155
S+G + H+ PVR +G L+AR S LP
Sbjct: 498 TSVGRVTVHSTPVRRSSGPAPQSLLSARRVSALP 531
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 27.3 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 134 SHAPPVRALTGSLTARLSSPLPELLELKPKAPHRLLPRSP 173
SH PP+ AL L A PLP+ + HR LP +P
Sbjct: 757 SHPPPL-ALGSGLHAPHKGPLPQASDPAVARQHRPLPSTP 795
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 27.3 bits (59), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 114 SSDENLATGPRNACSLGFLLSHAPPVRALTGSLTARLSSPL 154
+S NL+TG + + S L +PPVR GSL LS P+
Sbjct: 484 TSPPNLSTGRQRSRSYDRSLQRSPPVR--LGSLERMLSCPV 522
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 27.3 bits (59), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 114 SSDENLATGPRNACSLGFLLSHAPPVRALTGSLTARLSSPL 154
+S NL+TG + + S L +PPVR GSL LS P+
Sbjct: 484 TSPPNLSTGRQRSRSYDRSLQRSPPVR--LGSLERMLSCPV 522
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 26 NMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAI 85
N + I +++S++++ + K + S +PQ++ + A R R S+ ++LA +
Sbjct: 317 NKNLILKAISEAQESVTKTTNYSTVPQKQTL-----------PVAPRTRTSQEELLAEVV 365
Query: 86 R---QTPAALPTCKNFKASKRNIQQ 107
+ +TP P K + ++++
Sbjct: 366 QGQSRTPRISPPIKEEETKGDSVEK 390
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 26 NMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAI 85
N + I +++S++++ + K + S +PQ++ + A R R S+ ++LA +
Sbjct: 351 NKNLILKAISEAQESVTKTTNYSTVPQKQTL-----------PVAPRTRTSQEELLAEVV 399
Query: 86 R---QTPAALPTCKNFKASKRNIQQ 107
+ +TP P K + ++++
Sbjct: 400 QGQSRTPRISPPIKEEETKGDSVEK 424
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 26 NMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAI 85
N + I +++S++++ + K + S +PQ++ + A R R S+ ++LA +
Sbjct: 351 NKNLILKAISEAQESVTKTTNYSTVPQKQTL-----------PVAPRTRTSQEELLAEVV 399
Query: 86 R---QTPAALPTCKNFKASKRNIQQ 107
+ +TP P K + ++++
Sbjct: 400 QGQSRTPRISPPIKEEETKGDSVEK 424
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 26 NMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAI 85
N + I +++S++++ + K + S +PQ++ + A R R S+ ++LA +
Sbjct: 351 NKNLILKAISEAQESVTKTTNYSTVPQKQTL-----------PVAPRTRTSQEELLAEVV 399
Query: 86 R---QTPAALPTCKNFKASKRNIQQ 107
+ +TP P K + ++++
Sbjct: 400 QGQSRTPRISPPIKEEETKGDSVEK 424
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 26 NMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARRQRISELQMLASAI 85
N + I +++S++++ + K + S +PQ++ + A R R S+ ++LA +
Sbjct: 351 NKNLILKAISEAQESVTKTTNYSTVPQKQTL-----------PVAPRTRTSQEELLAEVV 399
Query: 86 R---QTPAALPTCKNFKASKRNIQQ 107
+ +TP P K + ++++
Sbjct: 400 QGQSRTPRISPPIKEEETKGDSVEK 424
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 26.9 bits (58), Expect = 9.3
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 132 LLSHAPPVRALT---GSLTARLSSPLPELLELKPKAPHRL--LPRSP 173
L S APP T SLT +L++PLP L P AP L LP P
Sbjct: 313 LQSQAPPTLPATPHSSSLTCQLATPLP-LAPPSPSAPPSLQTLPSPP 358
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 26.9 bits (58), Expect = 9.3
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 16 PEGIEGRLILNMHFITQ---SVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETARR 72
PEG E +L + + + V D +++L+K++ + +E+++L K+ +TA
Sbjct: 1634 PEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVS 1693
Query: 73 QRISELQMLASAIRQTPAALPTCKNFKASKRNIQQ 107
R EL+ ++++ + KA+ N+Q+
Sbjct: 1694 LR--ELEEENTSLKVIYTRSSEIEELKATIENLQE 1726
>gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo
sapiens]
Length = 950
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 31 TQSVSDSRKKLQKLESGSQIPQQELINLAFKVFN-NREETARRQRISELQMLASAIRQTP 89
T S +D +K L+K +S Q +E+ N + + + + ++++++ A R+T
Sbjct: 353 TVSAADLKKSLEKAQSCQQRLDREISNFLKMIKECDMAKEMLPSFLQKVEVVSEASRETC 412
Query: 90 AALPTCKNFKASKRNIQ 106
AL C N + ++
Sbjct: 413 VALTDCLNLFTKQEGVR 429
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,789,711
Number of Sequences: 37866
Number of extensions: 283687
Number of successful extensions: 992
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 26
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.