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Search of human proteins with 239748544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748544 PREDICTED: hypothetical protein XP_002346718 [Homo
sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754013 PREDICTED: hypothetical protein [Homo sapiens] 314 2e-86
gi|239748544 PREDICTED: hypothetical protein XP_002346718 [Homo ... 314 2e-86
gi|239742527 PREDICTED: hypothetical protein XP_002342542 [Homo ... 314 2e-86
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 33 0.097
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 33 0.097
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 33 0.097
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 33 0.097
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 33 0.097
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 33 0.097
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 33 0.097
gi|47717116 MAX interactor 1 isoform b [Homo sapiens] 32 0.22
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 32 0.22
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 32 0.22
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 32 0.28
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.28
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 31 0.37
gi|4758216 dishevelled 2 [Homo sapiens] 31 0.37
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 31 0.37
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.37
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 31 0.37
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 31 0.37
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 31 0.48
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 31 0.48
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 31 0.48
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 31 0.48
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 31 0.48
>gi|239754013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 314 bits (804), Expect = 2e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN
Sbjct: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
Query: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ
Sbjct: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
Query: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW
Sbjct: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
>gi|239748544 PREDICTED: hypothetical protein XP_002346718 [Homo
sapiens]
Length = 154
Score = 314 bits (804), Expect = 2e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN
Sbjct: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
Query: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ
Sbjct: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
Query: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW
Sbjct: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
>gi|239742527 PREDICTED: hypothetical protein XP_002342542 [Homo
sapiens]
Length = 154
Score = 314 bits (804), Expect = 2e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN
Sbjct: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN 60
Query: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ
Sbjct: 61 LGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQ 120
Query: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW
Sbjct: 121 GFLLQLRWECSVMLLATWTSQAQGILSVSLQSSW 154
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 33.1 bits (74), Expect = 0.097
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 7 PRAPAAPPELPAPDPEQATLR---------PASRYSEAWERDLFAGSFSKEARRERKVCG 57
P P +PP AP PE +R P + W + AG A +
Sbjct: 446 PGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDLMPAPAD-PTAR 504
Query: 58 SGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQ-----TRRGHGNS 111
G PRR RS K +R+ LS L S P S A S A + ++ GHG S
Sbjct: 505 EGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPS-PLGSSAASTALERPSFLSQTGHGVS 562
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.097
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 7 PRAPAAPPELPAPDPEQATLR---------PASRYSEAWERDLFAGSFSKEARRERKVCG 57
P P +PP AP PE +R P + W + AG A +
Sbjct: 496 PGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDLMPAPAD-PTAR 554
Query: 58 SGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQ-----TRRGHGNS 111
G PRR RS K +R+ LS L S P S A S A + ++ GHG S
Sbjct: 555 EGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPS-PLGSSAASTALERPSFLSQTGHGVS 612
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.097
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 7 PRAPAAPPELPAPDPEQATLR---------PASRYSEAWERDLFAGSFSKEARRERKVCG 57
P P +PP AP PE +R P + W + AG A +
Sbjct: 496 PGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDLMPAPAD-PTAR 554
Query: 58 SGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQ-----TRRGHGNS 111
G PRR RS K +R+ LS L S P S A S A + ++ GHG S
Sbjct: 555 EGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPS-PLGSSAASTALERPSFLSQTGHGVS 612
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 33.1 bits (74), Expect = 0.097
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 7 PRAPAAPPELPAPDPEQATLR---------PASRYSEAWERDLFAGSFSKEARRERKVCG 57
P P +PP AP PE +R P + W + AG A +
Sbjct: 496 PGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDLMPAPAD-PTAR 554
Query: 58 SGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQ-----TRRGHGNS 111
G PRR RS K +R+ LS L S P S A S A + ++ GHG S
Sbjct: 555 EGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPS-PLGSSAASTALERPSFLSQTGHGVS 612
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 33.1 bits (74), Expect = 0.097
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 10 PAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGRPRRARS 69
PA PP A PE + A+R + A A + +EAR ER G +R+
Sbjct: 177 PAPPPSPAARQPEPPPMPRAARSARAATAARAAAAEREEAREERA------RGCSEASRT 230
Query: 70 GKHRKGASRTPNVLSSGLEASGPAASFAESRA 101
G SR P G EA+ AA+ A RA
Sbjct: 231 SSD-SGPSRAPAARVVGGEAAATAAARARPRA 261
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 33.1 bits (74), Expect = 0.097
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 4 PALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGR 63
P P + A PE PAP+P+ PA SE +R G K G GN G
Sbjct: 177 PQQPVSEPAAPEQPAPEPKHPARAPARGDSE--DR---RGPGQKTGPDPASAPGRGNYGP 231
Query: 64 PRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRA 101
P R S +SR S + SG A + S A
Sbjct: 232 PVRRASEARMSSSSRD----SESWDHSGGAGDSSRSPA 265
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 33.1 bits (74), Expect = 0.097
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 4 PALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGR 63
P P + A PE PAP+P+ PA SE +R G K G GN G
Sbjct: 173 PQQPVSEPAAPEQPAPEPKHPARAPARGDSE--DR---RGPGQKTGPDPASAPGRGNYGP 227
Query: 64 PRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRA 101
P R S +SR S + SG A + S A
Sbjct: 228 PVRRASEARMSSSSRD----SESWDHSGGAGDSSRSPA 261
>gi|47717116 MAX interactor 1 isoform b [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.22
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 2 QPPALPRAPA-APPELPAPD----PEQATLRPASRYSEAWERDLFAGSFSKEARRERKVC 56
QPPALP PA A P P D E + + + + + + L A S+ ++ +E K C
Sbjct: 34 QPPALPEDPAGAKPRCPFSDIFNTSENSMEKHINTFLQNVQILLEAASYLEQIEKENKKC 93
Query: 57 GSGNLGR--------------PRR-ARSGKHRKGASRT 79
G PRR +R+ KH G+S T
Sbjct: 94 EHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNT 131
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.0 bits (71), Expect = 0.22
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 5 ALPRAPAAPPELPAPDPEQATL-RPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGR 63
+LPR P++P P P P ++L R R R + S S+ RR R + L R
Sbjct: 7 SLPR-PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSR-SRSRSRSRRRSRSLRW---LRR 61
Query: 64 PRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQGFL 123
R+RS G S S G +SG A+ +E A +S+ S +R + L
Sbjct: 62 RSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRL 121
Query: 124 LQLR 127
LR
Sbjct: 122 RLLR 125
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.0 bits (71), Expect = 0.22
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 5 ALPRAPAAPPELPAPDPEQATL-RPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGR 63
+LPR P++P P P P ++L R R R + S S+ RR R + L R
Sbjct: 7 SLPR-PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSR-SRSRSRSRRRSRSLRW---LRR 61
Query: 64 PRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQGFL 123
R+RS G S S G +SG A+ +E A +S+ S +R + L
Sbjct: 62 RSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRL 121
Query: 124 LQLR 127
LR
Sbjct: 122 RLLR 125
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 32.0 bits (71), Expect = 0.22
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 5 ALPRAPAAPPELPAPDPEQATL-RPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGR 63
+LPR P++P P P P ++L R R R + S S+ RR R + L R
Sbjct: 7 SLPR-PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSR-SRSRSRSRRRSRSLRW---LRR 61
Query: 64 PRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFHQRIQGFL 123
R+RS G S S G +SG A+ +E A +S+ S +R + L
Sbjct: 62 RSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRL 121
Query: 124 LQLR 127
LR
Sbjct: 122 RLLR 125
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 4 PALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSG 59
P AP PP LP P P + P + + + AG ++EARR + G G
Sbjct: 27 PGAEGAPLLPPPLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEARRLEQRWGFG 82
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 31.6 bits (70), Expect = 0.28
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 8 RAPAAP--PELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLGRPR 65
R+PAA P PA P R+ + ++D EARR + GSG P
Sbjct: 99 RSPAAAHHPTRPAA--------PCRRHHQQQQQD------QAEARRRERCGGSGVRVAPG 144
Query: 66 RARSGKH-RKGASRTPNVLSSGLEASGPAASFAESRACQTRR 106
+R G+H R+GA+R G GP +R C RR
Sbjct: 145 GSRRGRHGRRGAARAGGTQVRG---GGPGPELVAAR-CPPRR 182
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.28
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 3 PPALPRAPAAPPELPAPDPE-QATLRPASRYSEAWE-RDLFAGSFSKEARRERKVCGSGN 60
PPA APAAP + PAP PE Q + RP ++WE R G ++ A +G
Sbjct: 122 PPAA--APAAPAQPPAPRPESQLSDRP-----QSWEQRPRGPGRSARSAGAAAP--PAGG 172
Query: 61 LGRPRRARSGKHRKGASRT 79
L + R+AR + R A+ T
Sbjct: 173 LAQARQARRRRPRAAAALT 191
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 31.2 bits (69), Expect = 0.37
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 4 PALPRAPAAPPELPAPDPEQATLRPA 29
PALPR+ P ELP P QA PA
Sbjct: 440 PALPRSATLPQELPVPGLSQAATMPA 465
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 31.2 bits (69), Expect = 0.37
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 1 MQPPAL-PRAPAAPPELPAPD-PEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGS 58
M PP PRA APP P P P + T ++ ++ + + E E + S
Sbjct: 99 MAPPVHEPRAELAPPAPPLPPLPPERTSGIGDSRPPSFHPNVSSSHENLEPETETESVVS 158
Query: 59 GNLGRPRRARSGKHRKGASRT 79
RPRR S +H G RT
Sbjct: 159 LRRERPRRRDSSEHGAGGHRT 179
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 0.37
Identities = 35/129 (27%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 3 PPALPRAPAAP------PELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVC 56
PP RAP+ P PAP P RPA R F R +
Sbjct: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRC---------FPAGTRGWVSIA 137
Query: 57 GSGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFH 116
G+ A GAS P++L G GP A F AC+ R +A H
Sbjct: 138 LGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFC---ACRRGRSAAAGMAGAH 194
Query: 117 QRIQGFLLQ 125
+LL+
Sbjct: 195 GPRSPYLLR 203
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 0.37
Identities = 35/129 (27%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 3 PPALPRAPAAP------PELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVC 56
PP RAP+ P PAP P RPA R F R +
Sbjct: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRC---------FPAGTRGWVSIA 137
Query: 57 GSGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNSIASFH 116
G+ A GAS P++L G GP A F AC+ R +A H
Sbjct: 138 LGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFC---ACRRGRSAAAGMAGAH 194
Query: 117 QRIQGFLLQ 125
+LL+
Sbjct: 195 GPRSPYLLR 203
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 31.2 bits (69), Expect = 0.37
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 3 PPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGNLG 62
P + P +P +PPE PA P Q RP S + L S
Sbjct: 756 PQSFPESPQSPPEGPAQSPLQ---RPVSSFFSYTLASLLQSSHESPQ------------S 800
Query: 63 RPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAES 99
P + S P+ SS L S P +SF S
Sbjct: 801 PPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSS 837
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.2 bits (69), Expect = 0.37
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 3 PPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARR--------ERK 54
PP R P+ PP +P P + + RYS + S +R +R+
Sbjct: 575 PPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRR 634
Query: 55 VCGSGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRGHGNS 111
V S P + RS K R+P++ S + S P+ S E+R+ Q + H S
Sbjct: 635 VSHS----PPPKQRSSPVTK--RRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPS 685
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 31.2 bits (69), Expect = 0.37
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 3 PPALPRAPAAPPELPA----PDPEQ---ATLRPASRYSEAWERDLFAGSFS-KEARRERK 54
PP P AP PPE PA P+P + + L P + +L G S K RR
Sbjct: 804 PPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGSPDPPVPELLTGRGSGKRGRRG-- 861
Query: 55 VCGSGNLGRPRRARSGKHRKGASR 78
G G G AR + RK SR
Sbjct: 862 --GGGLRGINGEARPARGRKPGSR 883
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 31.2 bits (69), Expect = 0.37
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 2 QPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDL---FAGSFSKEARRER-KVCG 57
QPPA P+ PP P P PE +R R++ GS R R +V G
Sbjct: 216 QPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQG 275
Query: 58 SGNLGRPRRARSGKHRKGASRTPNVLSSGLEASGPAASFAESRACQTRRG 107
R R + R GA P + G A A +R +++RG
Sbjct: 276 LLEEEAAARGRLERTRLGALALPRG-----DRPGRAPPAASARPSRSKRG 320
Score = 30.4 bits (67), Expect = 0.63
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 3 PPALPRAP---------AAPPELPAPDPEQATLRPAS 30
PPA PRAP AAPP PAP P A + A+
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAA 144
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.48
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGS 58
+QP A RA PP LP P+QA L P R L +F+ +A R+++V S
Sbjct: 151 LQPVAKRRARPVPPGLPGA-PKQAALTPG-------RRPLTPAAFAPKASRDQQVTDS 200
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 0.48
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 3 PPALPRAPAAPPELPAPDPE-QATLRPASRYSEAWERDLFAGSFSKEARRERKVCG---- 57
PPA APAAP + PAP PE Q + RP ++WE+ + R + G
Sbjct: 122 PPAA--APAAPAQPPAPRPESQLSDRP-----QSWEQK------PRGPGRSARSAGAAAP 168
Query: 58 -SGNLGRPRRARSGKHRKGASRT 79
+G L + R+AR + R A+ T
Sbjct: 169 PAGGLAQARQARRRRPRAAAALT 191
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.48
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGS 58
+QP A RA PP LP P+QA L P R L +F+ +A R+++V S
Sbjct: 151 LQPVAKRRARPVPPGLPGA-PKQAALTPG-------RRPLTPAAFAPKASRDQQVTDS 200
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 0.48
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 3 PPALPRAPAAPPELPAPDPE-QATLRPASRYSEAWERDLFAGSFSKEARRERKVCG---- 57
PPA APAAP + PAP PE Q + RP ++WE+ + R + G
Sbjct: 122 PPAA--APAAPAQPPAPRPESQLSDRP-----QSWEQK------PRGPGRSARSAGAAAP 168
Query: 58 -SGNLGRPRRARSGKHRKGASRT 79
+G L + R+AR + R A+ T
Sbjct: 169 PAGGLAQARQARRRRPRAAAALT 191
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.48
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 1 MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGS 58
+QP A RA PP LP P+QA L P R L +F+ +A R+++V S
Sbjct: 151 LQPVAKRRARPVPPGLPGA-PKQAALTPG-------RRPLTPAAFAPKASRDQQVTDS 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.128 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,917,618
Number of Sequences: 37866
Number of extensions: 331706
Number of successful extensions: 4228
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 3820
Number of HSP's gapped (non-prelim): 538
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.