Guide to the Human Genome
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Name: LOC100289865 Sequence: fasta or formatted (154aa) NCBI GI: 239748544
Description:

PREDICTED: hypothetical protein XP_002346718

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         20           2
 C cysteine            1.9          3           1
 D aspartate           1.3          2           1
 E glutamate           5.8          9           1
 F phenylalanine       3.2          5           1
 G glycine             7.8         12           1
 H histidine           1.9          3           1
 I isoleucine          1.9          3           1
 K lysine              2.6          4           1
 L leucine             9.1         14           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline             8.4         13           2
 Q glutamine           5.8          9           1
 R arginine           11.7         18           2
 S serine             13.0         20           2
 T threonine           3.2          5           1
 V valine              2.6          4           1
 W tryptophan          2.6          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346718 
LOC100292456          1.000   PREDICTED: hypothetical protein 
LOC100288522          1.000   PREDICTED: hypothetical protein XP_002342542 
FCHO1                 0.028   FCH domain only 1 isoform c 
FCHO1                 0.028   FCH domain only 1 isoform b 
FCHO1                 0.028   FCH domain only 1 isoform b 
FCHO1                 0.028   FCH domain only 1 isoform a 
LOC100287250          0.028   PREDICTED: hypothetical protein XP_002344493 
RPH3A                 0.028   rabphilin 3A homolog isoform 1 
RPH3A                 0.028   rabphilin 3A homolog isoform 2 
MXI1                  0.024   MAX interactor 1 isoform b 
LOC100293644          0.024   PREDICTED: hypothetical protein 
LOC100287563          0.024   PREDICTED: hypothetical protein 
LOC100287563          0.024   PREDICTED: hypothetical protein XP_002343733 
ACBD3                 0.024   acyl-Coenzyme A binding domain containing 3 
LOC100291593          0.024   PREDICTED: similar to hCG2012845 
LOC100132234          0.024   PREDICTED: hypothetical protein LOC100132234 
NPAS2                 0.021   neuronal PAS domain protein 2 
DVL2                  0.021   dishevelled 2 
LOC100128328          0.021   PREDICTED: hypothetical protein 
LOC100128328          0.021   PREDICTED: hypothetical protein 
MAGEC1                0.021   melanoma antigen family C, 1 
SRRM1                 0.021   serine/arginine repetitive matrix 1 
MBD6                  0.021   methyl-CpG binding domain protein 6 
SAMD1                 0.021   sterile alpha motif domain containing 1 
LOC388906             0.021   PREDICTED: hypothetical protein 
LOC100132234          0.021   PREDICTED: hypothetical protein LOC100132234 
LOC388906             0.021   PREDICTED: hypothetical protein 
LOC100132234          0.021   PREDICTED: hypothetical protein LOC100132234 
LOC388906             0.021   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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