Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748354
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo
sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo ... 360 e-100
gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo ... 215 1e-56
gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo ... 215 1e-56
gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo ... 130 5e-31
gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo ... 124 3e-29
gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo ... 33 0.11
gi|20143912 WD repeat and SOCS box-containing 1 isoform 2 [Homo ... 33 0.11
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 31 0.43
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 31 0.43
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 30 0.96
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 30 0.96
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 30 0.96
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 29 2.1
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 28 3.7
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 28 3.7
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 28 3.7
gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens] 28 3.7
gi|14249340 phospholipase C, delta 4 [Homo sapiens] 28 4.8
gi|156415992 transcription factor B1, mitochondrial [Homo sapiens] 27 8.1
>gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo
sapiens]
Length = 167
Score = 360 bits (925), Expect = e-100
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MCSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRV 60
MCSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRV
Sbjct: 1 MCSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRV 60
Query: 61 AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSEL 120
AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSEL
Sbjct: 61 AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSEL 120
Query: 121 GGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSLGG 167
GGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSLGG
Sbjct: 121 GGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSLGG 167
>gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo
sapiens]
Length = 156
Score = 215 bits (548), Expect = 1e-56
Identities = 107/128 (83%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Query: 4 VSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRVAMS 63
+SSSCSKD PPTCAGSTFG MRELPTISHL TAFLR LPHKLQERH RH TFQ+VAMS
Sbjct: 22 MSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRSLPHKLQERHSRHNTFQQVAMS 81
Query: 64 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSELGGH 123
SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLS AGS+ PQ GSELGG
Sbjct: 82 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGP 141
Query: 124 LPCLPTSL 131
P LP +
Sbjct: 142 -PALPAHI 148
>gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
sapiens]
Length = 156
Score = 215 bits (548), Expect = 1e-56
Identities = 107/128 (83%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Query: 4 VSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRVAMS 63
+SSSCSKD PPTCAGSTFG MRELPTISHL TAFLR LPHKLQERH RH TFQ+VAMS
Sbjct: 22 MSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRSLPHKLQERHSRHNTFQQVAMS 81
Query: 64 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSELGGH 123
SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLS AGS+ PQ GSELGG
Sbjct: 82 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGP 141
Query: 124 LPCLPTSL 131
P LP +
Sbjct: 142 -PALPVHI 148
>gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo
sapiens]
Length = 167
Score = 130 bits (327), Expect = 5e-31
Identities = 85/174 (48%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 1 MCSVSSSCSKDRPPTCAGSTF---GWAGMRELPTIS-HLCTAFLRRLPHKLQERHGRHTT 56
MC +SSSCSKDRPPTCAGSTF GW PT + H A L +K RH++
Sbjct: 1 MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTN--YKGATADTRHSS 58
Query: 57 FQRVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSC--- 113
S L+ G +Y+ E S C V + NP+ + G
Sbjct: 59 GWPCLHVS--LKDRHQGN-IYISAERASAC--VVQLCSNGNPETQMLVQTPCLGQPALQV 113
Query: 114 PQHGSELGGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSLGG 167
P G GHLPCLPTSL PGILD ENQGDVVGNRQVLCRKPRCHPN LCSLGG
Sbjct: 114 PSVGWNWVGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
>gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo
sapiens]
Length = 167
Score = 124 bits (312), Expect = 3e-29
Identities = 79/182 (43%), Positives = 87/182 (47%), Gaps = 30/182 (16%)
Query: 1 MCSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRV 60
MCSVSSSCSK R PTC GSTF G P P H T
Sbjct: 1 MCSVSSSCSKYRLPTCTGSTFSRGGCENFP-------------PFPTYALHSSGTCLTNY 47
Query: 61 AMSSCQLERSSPGKYL------------YLGRESFSLCSPAVLKWKSRNPDVGPNTLSWT 108
++ RSS L Y+ E S C V + NP+ +
Sbjct: 48 KSATADTPRSSGWPCLHVSLKDLRQGNIYISAERASAC--VVQLCSNGNPETQILVKTPC 105
Query: 109 AGSSC---PQHGSELGGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSL 165
G P G GHLPCLPTSL PGILD EN+GDVVGNRQVLCRKPRCHPNPLCS+
Sbjct: 106 LGEPALQVPSVGVNWVGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSI 165
Query: 166 GG 167
GG
Sbjct: 166 GG 167
>gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo
sapiens]
Length = 421
Score = 33.1 bits (74), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 2 CSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRL 43
C+ S+ S T GS + WA R++P++ HLC +RR+
Sbjct: 357 CAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRV 398
>gi|20143912 WD repeat and SOCS box-containing 1 isoform 2 [Homo
sapiens]
Length = 275
Score = 33.1 bits (74), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 2 CSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRL 43
C+ S+ S T GS + WA R++P++ HLC +RR+
Sbjct: 211 CAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRV 252
>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
sapiens]
Length = 246
Score = 31.2 bits (69), Expect = 0.43
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 47 LQERHGRHTTFQRVAMSSCQLERSSPG--KYLYLGRESFSLCSPAVLKWKSRNPDVGPNT 104
LQ R + T Q + Q + S+ G KY Y G++ C P L W++ P P
Sbjct: 20 LQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFC-PDTLDWRAAEPRAWPTK 78
Query: 105 LSW 107
L W
Sbjct: 79 LEW 81
>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
sapiens]
Length = 260
Score = 31.2 bits (69), Expect = 0.43
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 47 LQERHGRHTTFQRVAMSSCQLERSSPG--KYLYLGRESFSLCSPAVLKWKSRNPDVGPNT 104
LQ R + T Q + Q + S+ G KY Y G++ C P L W++ P P
Sbjct: 20 LQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFC-PDTLDWRAAEPRAWPTK 78
Query: 105 LSW 107
L W
Sbjct: 79 LEW 81
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 56 TFQRVAMSSCQLERSSPG--KYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSW 107
T Q + Q + S+ G KY Y G++ C P L W++ P P L W
Sbjct: 94 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFC-PDTLDWRAAEPRAWPTKLEW 146
>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 56 TFQRVAMSSCQLERSSPG--KYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSW 107
T Q + Q + S+ G KY Y G++ C P L W++ P P L W
Sbjct: 117 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFC-PDTLDWRAAEPRAWPTKLEW 169
>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 56 TFQRVAMSSCQLERSSPG--KYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSW 107
T Q + Q + S+ G KY Y G++ C P L W++ P P L W
Sbjct: 117 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFC-PDTLDWRAAEPRAWPTKLEW 169
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 28.9 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 93 WKSRNPDVGPNTLSWTAGSSCPQHGSELGGHLPCLPTS 130
W + D GP T S + ++ P G+ L G C P S
Sbjct: 653 WVMDSRDRGPGTSSVSTSNASPSEGAPLAGSYGCTPHS 690
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 93 WKSRNPDVGPNTLSWTAG-SSCPQHGSELGG 122
W P +GP L W G S C HG GG
Sbjct: 179 WLPTGPGIGPAGLCWACGISGCCSHGWWSGG 209
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 93 WKSRNPDVGPNTLSWTAG-SSCPQHGSELGG 122
W P +GP L W G S C HG GG
Sbjct: 179 WLPTGPGIGPAGLCWACGISGCCSHGWWSGG 209
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 93 WKSRNPDVGPNTLSWTAG-SSCPQHGSELGG 122
W P +GP L W G S C HG GG
Sbjct: 179 WLPTGPGIGPAGLCWACGVSGCCSHGWWSGG 209
>gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens]
Length = 571
Score = 28.1 bits (61), Expect = 3.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 145 VGNRQVLCRKPRCHPNPLCSLGG 167
+ ++ VL +PRC P LC++GG
Sbjct: 268 LSHQTVLMTRPRCAPKVLCAVGG 290
>gi|14249340 phospholipase C, delta 4 [Homo sapiens]
Length = 762
Score = 27.7 bits (60), Expect = 4.8
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 93 WKSRNPDVGPNTLSWTAGSSCPQHG 117
WKSRN +G TL WT C Q G
Sbjct: 708 WKSRNDFIGQYTLPWT----CMQQG 728
>gi|156415992 transcription factor B1, mitochondrial [Homo sapiens]
Length = 346
Score = 26.9 bits (58), Expect = 8.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 44 PHKLQERHGRHTTFQRVAMSSCQLER---SSPGKYLYLGRESFSLCSPAVLKW 93
P KL+ HG TF+ S L+R P +G FS+ +P ++KW
Sbjct: 102 PGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKW 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,522,624
Number of Sequences: 37866
Number of extensions: 403571
Number of successful extensions: 792
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 19
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.