Guide to the Human Genome
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Name: TFB1M Sequence: fasta or formatted (346aa) NCBI GI: 156415992
Description:

transcription factor B1, mitochondrial

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         20           2
 C cysteine            1.7          6           1
 D aspartate           4.9         17           2
 E glutamate           6.9         24           2
 F phenylalanine       4.9         17           1
 G glycine             4.9         17           2
 H histidine           1.7          6           1
 I isoleucine          5.5         19           2
 K lysine              6.9         24           1
 L leucine            11.8         41           2
 M methionine          1.7          6           1
 N asparagine          3.8         13           1
 P proline             6.6         23           2
 Q glutamine           4.6         16           1
 R arginine            8.1         28           2
 S serine              5.2         18           1
 T threonine           4.6         16           1
 V valine              7.2         25           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor B1, mitochondrial 
DIMT1L                0.073   dimethyladenosine transferase 
TFB2M                 0.046   transcription factor B2, mitochondrial 
UBE3A                 0.007   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.007   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.007   ubiquitin protein ligase E3A isoform 2 
NEXN                  0.006   nexilin (F actin binding protein) 
CNOT4                 0.006   CCR4-NOT transcription complex, subunit 4 isoform a ...
CNOT4                 0.006   CCR4-NOT transcription complex, subunit 4 isoform b ...
PTPRQ                 0.004   protein tyrosine phosphatase, receptor type, Q [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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