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Search of human proteins with 239748344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
(653 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 1362 0.0
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 422 e-118
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 419 e-117
gi|226437602 NK1 homeobox 2 [Homo sapiens] 175 1e-43
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 175 1e-43
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 175 1e-43
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 175 1e-43
gi|24497513 homeobox A3 isoform a [Homo sapiens] 102 8e-22
gi|13562112 homeobox A3 isoform a [Homo sapiens] 102 8e-22
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 97 4e-20
gi|89257348 homeo box HB9 [Homo sapiens] 96 8e-20
gi|13273315 homeobox B4 [Homo sapiens] 95 2e-19
gi|24497589 aristaless related homeobox [Homo sapiens] 95 2e-19
gi|33457326 GS homeobox 1 [Homo sapiens] 94 4e-19
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 91 3e-18
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 90 7e-18
gi|84570137 homeobox B3 [Homo sapiens] 89 1e-17
gi|19923391 homeobox D3 [Homo sapiens] 89 1e-17
gi|148613882 homeobox A4 [Homo sapiens] 89 1e-17
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 89 2e-17
gi|4758168 distal-less homeobox 2 [Homo sapiens] 88 2e-17
gi|157743259 H6 family homeobox 3 [Homo sapiens] 87 4e-17
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 87 4e-17
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 87 5e-17
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 85 2e-16
gi|7657180 VENT homeobox [Homo sapiens] 85 2e-16
gi|24497538 homeobox C4 [Homo sapiens] 83 7e-16
gi|24497540 homeobox C4 [Homo sapiens] 83 7e-16
gi|12707580 paired-like homeobox 2b [Homo sapiens] 83 9e-16
gi|24497515 homeobox A3 isoform b [Homo sapiens] 82 1e-15
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 1362 bits (3525), Expect = 0.0
Identities = 653/653 (100%), Positives = 653/653 (100%)
Query: 1 MRSCCSDSADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGP 60
MRSCCSDSADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGP
Sbjct: 1 MRSCCSDSADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGP 60
Query: 61 PGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATR 120
PGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATR
Sbjct: 61 PGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATR 120
Query: 121 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTG 180
YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTG
Sbjct: 121 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTG 180
Query: 181 LPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYG 240
LPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYG
Sbjct: 181 LPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYG 240
Query: 241 APAFYAPHLLSPVPLXXXXXXXPPRPLPGPAPWSWWGRGIFRLLLPTPAACSGPTPLPHS 300
APAFYAPHLLSPVPL PPRPLPGPAPWSWWGRGIFRLLLPTPAACSGPTPLPHS
Sbjct: 241 APAFYAPHLLSPVPLXXXXXXXPPRPLPGPAPWSWWGRGIFRLLLPTPAACSGPTPLPHS 300
Query: 301 PAREHRARRVSLGAVSASATAWRKKRLPVFPGEKGLPGLSYLPKSVPAHSDPGPQKSGRV 360
PAREHRARRVSLGAVSASATAWRKKRLPVFPGEKGLPGLSYLPKSVPAHSDPGPQKSGRV
Sbjct: 301 PAREHRARRVSLGAVSASATAWRKKRLPVFPGEKGLPGLSYLPKSVPAHSDPGPQKSGRV 360
Query: 361 LPLGAATSPPTTLETVPTSPHRLSESCGFGVRLSWAQGVSDSQSLCSGPSSESDCVQSHL 420
LPLGAATSPPTTLETVPTSPHRLSESCGFGVRLSWAQGVSDSQSLCSGPSSESDCVQSHL
Sbjct: 361 LPLGAATSPPTTLETVPTSPHRLSESCGFGVRLSWAQGVSDSQSLCSGPSSESDCVQSHL 420
Query: 421 SLPLCFAESHMWETEARQSWGLLGAVPALVPEALAVTRALGCPILAWPPQPPAHLVAGSS 480
SLPLCFAESHMWETEARQSWGLLGAVPALVPEALAVTRALGCPILAWPPQPPAHLVAGSS
Sbjct: 421 SLPLCFAESHMWETEARQSWGLLGAVPALVPEALAVTRALGCPILAWPPQPPAHLVAGSS 480
Query: 481 CSESWAAWAWGTLILHLPSCHGNGVPGPVLAPRCPGNGVLLPVLAPQCPGNGVPRPVLAL 540
CSESWAAWAWGTLILHLPSCHGNGVPGPVLAPRCPGNGVLLPVLAPQCPGNGVPRPVLAL
Sbjct: 481 CSESWAAWAWGTLILHLPSCHGNGVPGPVLAPRCPGNGVLLPVLAPQCPGNGVPRPVLAL 540
Query: 541 RCPPGGQGPSRHHKARPSSSQTKPAPQPQSKPQAPSTLPTSNPIYPYPDARKHPASNLIY 600
RCPPGGQGPSRHHKARPSSSQTKPAPQPQSKPQAPSTLPTSNPIYPYPDARKHPASNLIY
Sbjct: 541 RCPPGGQGPSRHHKARPSSSQTKPAPQPQSKPQAPSTLPTSNPIYPYPDARKHPASNLIY 600
Query: 601 PHPDARKHPSSLGHSSHSPPAALRANLSQSALDEGSSMLDQLARAPSHCEPYQ 653
PHPDARKHPSSLGHSSHSPPAALRANLSQSALDEGSSMLDQLARAPSHCEPYQ
Sbjct: 601 PHPDARKHPSSLGHSSHSPPAALRANLSQSALDEGSSMLDQLARAPSHCEPYQ 653
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 422 bits (1086), Expect = e-118
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 48 PGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 107
PGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE
Sbjct: 613 PGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 672
Query: 108 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 167
QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG
Sbjct: 673 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 732
Query: 168 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 227
GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA
Sbjct: 733 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 792
Query: 228 VLSPFVLGSQTYGAPAFYAPHL 249
VLSPFVLGSQTYGAPAFYAPHL
Sbjct: 793 VLSPFVLGSQTYGAPAFYAPHL 814
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 419 bits (1078), Expect = e-117
Identities = 201/202 (99%), Positives = 201/202 (99%)
Query: 48 PGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 107
PGPRENSPVA GPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE
Sbjct: 210 PGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 269
Query: 108 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 167
QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG
Sbjct: 270 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 329
Query: 168 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 227
GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA
Sbjct: 330 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 389
Query: 228 VLSPFVLGSQTYGAPAFYAPHL 249
VLSPFVLGSQTYGAPAFYAPHL
Sbjct: 390 VLSPFVLGSQTYGAPAFYAPHL 411
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 175 bits (443), Expect = 1e-43
Identities = 116/224 (51%), Positives = 135/224 (60%), Gaps = 23/224 (10%)
Query: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89
P P R+R +P P GA A G G +P G+ + +P+R+R
Sbjct: 98 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 156
Query: 90 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149
+ KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 157 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 215
Query: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209
TKWKKQNPGAD +A GGG P PGA G G GG S SP PP L +P++
Sbjct: 216 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 269
Query: 210 GPGGLV--CAAQLPFLSSPAVLSPFV--LGSQTYGAPAFYAPHL 249
++ AA P L++ A SPF LG +Y P FYAP L
Sbjct: 270 SAANVLFPSAASFP-LTAAAPGSPFAPFLG-PSYLTP-FYAPRL 310
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 175 bits (443), Expect = 1e-43
Identities = 116/224 (51%), Positives = 135/224 (60%), Gaps = 23/224 (10%)
Query: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89
P P R+R +P P GA A G G +P G+ + +P+R+R
Sbjct: 120 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 178
Query: 90 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149
+ KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 179 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 237
Query: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209
TKWKKQNPGAD +A GGG P PGA G G GG S SP PP L +P++
Sbjct: 238 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 291
Query: 210 GPGGLV--CAAQLPFLSSPAVLSPFV--LGSQTYGAPAFYAPHL 249
++ AA P L++ A SPF LG +Y P FYAP L
Sbjct: 292 SAANVLFPSAASFP-LTAAAPGSPFAPFLG-PSYLTP-FYAPRL 332
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 175 bits (443), Expect = 1e-43
Identities = 116/224 (51%), Positives = 135/224 (60%), Gaps = 23/224 (10%)
Query: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89
P P R+R +P P GA A G G +P G+ + +P+R+R
Sbjct: 120 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 178
Query: 90 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149
+ KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 179 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 237
Query: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209
TKWKKQNPGAD +A GGG P PGA G G GG S SP PP L +P++
Sbjct: 238 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 291
Query: 210 GPGGLV--CAAQLPFLSSPAVLSPFV--LGSQTYGAPAFYAPHL 249
++ AA P L++ A SPF LG +Y P FYAP L
Sbjct: 292 SAANVLFPSAASFP-LTAAAPGSPFAPFLG-PSYLTP-FYAPRL 332
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 175 bits (443), Expect = 1e-43
Identities = 116/224 (51%), Positives = 135/224 (60%), Gaps = 23/224 (10%)
Query: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89
P P R+R +P P GA A G G +P G+ + +P+R+R
Sbjct: 120 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 178
Query: 90 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149
+ KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 179 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 237
Query: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209
TKWKKQNPGAD +A GGG P PGA G G GG S SP PP L +P++
Sbjct: 238 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 291
Query: 210 GPGGLV--CAAQLPFLSSPAVLSPFV--LGSQTYGAPAFYAPHL 249
++ AA P L++ A SPF LG +Y P FYAP L
Sbjct: 292 SAANVLFPSAASFP-LTAAAPGSPFAPFLG-PSYLTP-FYAPRL 332
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 102 bits (255), Expect = 8e-22
Identities = 85/256 (33%), Positives = 102/256 (39%), Gaps = 58/256 (22%)
Query: 19 TPTCTPAQPSWARLRPTRPPEP------PSTRQRPPGPRENSPVAPGPPGGAAAPGGAGT 72
T + P+QP P PP P P Q P P +P AP PP A+ P A
Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
Query: 73 TPQGTATAAKP--------------------KRKRTGSDSKSGKP-------------RR 99
P A P K+ S S SG+ +R
Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKR 193
Query: 100 ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA 159
ARTA+T QLV LE +F RYL R+ +A L+LTE Q+KIWFQNRR K+KK G
Sbjct: 194 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
Query: 160 DTSAPTGGGGGPGPGAGPGTGLPGGLS------------PLSPSPPMGAPLGMHG--PAG 205
+GG PG G G L+ P SP P P G +G PA
Sbjct: 254 GMLTSSGGQSPSRSPVPPGAG--GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 206 YPAHGPGGLVCAAQLP 221
YPA P CA P
Sbjct: 312 YPASLPS---CAPPPP 324
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 102 bits (255), Expect = 8e-22
Identities = 85/256 (33%), Positives = 102/256 (39%), Gaps = 58/256 (22%)
Query: 19 TPTCTPAQPSWARLRPTRPPEP------PSTRQRPPGPRENSPVAPGPPGGAAAPGGAGT 72
T + P+QP P PP P P Q P P +P AP PP A+ P A
Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
Query: 73 TPQGTATAAKP--------------------KRKRTGSDSKSGKP-------------RR 99
P A P K+ S S SG+ +R
Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKR 193
Query: 100 ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA 159
ARTA+T QLV LE +F RYL R+ +A L+LTE Q+KIWFQNRR K+KK G
Sbjct: 194 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
Query: 160 DTSAPTGGGGGPGPGAGPGTGLPGGLS------------PLSPSPPMGAPLGMHG--PAG 205
+GG PG G G L+ P SP P P G +G PA
Sbjct: 254 GMLTSSGGQSPSRSPVPPGAG--GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 206 YPAHGPGGLVCAAQLP 221
YPA P CA P
Sbjct: 312 YPASLPS---CAPPPP 324
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 97.4 bits (241), Expect = 4e-20
Identities = 74/193 (38%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 55 PVAPGP------PGGAAAPGGAGTTPQGTATAAKPK---RKRTGSDSKSGKPRRARTAFT 105
P PGP AA G A T + + A P R G G+ ++ RT F+
Sbjct: 152 PRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFS 211
Query: 106 YEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ---------- 155
Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 212 RSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASL 271
Query: 156 -NPGAD--TSAPTGGGGGP--GPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHG 210
PGA P P AGP LP L+P +P+PP LG G YP
Sbjct: 272 SPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPL-LGFSGALAYPL-- 328
Query: 211 PGGLVCAAQLPFL 223
AA +PFL
Sbjct: 329 -AAFPAAASVPFL 340
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 96.3 bits (238), Expect = 8e-20
Identities = 57/122 (46%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 77 TATAAKPKRKRTGSDSKS---GKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALS 133
TA PK S ++S GK RR RTAFT +QL+ LE++FK +YLS +R +A S
Sbjct: 218 TAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATS 277
Query: 134 LSLTETQVKIWFQNRRTKWK-----KQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPL 188
L LTETQVKIWFQNRR KWK K+ + GGGGG G G G L P
Sbjct: 278 LMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPP 337
Query: 189 SP 190
+P
Sbjct: 338 AP 339
Score = 30.8 bits (68), Expect = 4.1
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 159 ADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPP 193
A ++ TGGGGG G G G G SP S PP
Sbjct: 35 AAAASGTGGGGG---GGGASGGTSGSCSPASSEPP 66
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 95.1 bits (235), Expect = 2e-19
Identities = 68/206 (33%), Positives = 93/206 (45%), Gaps = 40/206 (19%)
Query: 10 DRAFRPR---GATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAA 66
+ +F+P G CT + +A R PP PP PP P SP AP PP A
Sbjct: 45 ESSFQPEAGFGRRAACTVQR--YAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGAL 102
Query: 67 ---PG----GAGTTPQGTATAAKPKRKRTGSDS----------------------KSGKP 97
PG ++P A P + G+P
Sbjct: 103 LPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEP 162
Query: 98 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 157
+R+RTA+T +Q++ LE +F RYL+ R+ +A +L L+E Q+KIWFQNRR KWKK +
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
Query: 158 GADTSAPTGG-----GGGPG-PGAGP 177
+T +GG GG PG P GP
Sbjct: 223 LPNTKIRSGGAAGSAGGPPGRPNGGP 248
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 94.7 bits (234), Expect = 2e-19
Identities = 87/260 (33%), Positives = 108/260 (41%), Gaps = 37/260 (14%)
Query: 89 GSDSKSG----KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIW 144
GSDS+ G K RR RT FT QL LE F+ T Y V R LA+ L LTE +V++W
Sbjct: 316 GSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVW 375
Query: 145 FQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPM--GAPLGMHG 202
FQNRR KW+K+ + P PG PG LS P P +P H
Sbjct: 376 FQNRRAKWRKREKAGAQTHP------------PGLPFPGPLSATHPLSPYLDASPFPPHH 423
Query: 203 PAGYPAHGPGGLVCAAQLPFLSSP---AVLSP--FVLGSQTY-GAPAFYAPHLLSPVPLX 256
PA A AA P L P A L P LG T+ GA F P +SP
Sbjct: 424 PALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPA--- 480
Query: 257 XXXXXXPPRPLPGPAPWSWWGRGIFRLLLPTP----AACSGPTPLPHSPAREHRARRVSL 312
R AP + L PTP A SG P + A + RA ++
Sbjct: 481 ------FGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAA 534
Query: 313 GAVSASATAWRKKRLPVFPG 332
+ A A + +L + PG
Sbjct: 535 LRLKAKEHAAQLTQLNILPG 554
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 94.0 bits (232), Expect = 4e-19
Identities = 67/165 (40%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 24 PAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP 83
P P+ L+ + PP P G R++S V+PG G AA A Q + P
Sbjct: 71 PGPPALPLLKASFPPFGSQYCHAPLG-RQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDP 129
Query: 84 KRKRTGS-DSKSGK---PRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTET 139
++ S DS S + +R RTAFT QL+ LE +F + YLS R+ +A L+L+E
Sbjct: 130 RQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEK 189
Query: 140 QVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGG 184
QVKIWFQNRR K KK+ G S GGGGG GAG G P G
Sbjct: 190 QVKIWFQNRRVKHKKEGKG---SNHRGGGGG---GAGGGGSAPQG 228
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 90.9 bits (224), Expect = 3e-18
Identities = 63/153 (41%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 27 PSWARLRPTRPPE---PPSTRQRPPGPRENSPV--APGPPGGAAAPGGAGTTPQGTATAA 81
PS AR P+ PP PP NS + P G A APG G A A
Sbjct: 101 PSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAE 160
Query: 82 KP---KRKRTGSDSKSG--------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNL 130
K KRK SDS+ G KPR+ RTAFT EQ+ LE +F YL+ R +
Sbjct: 161 KRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEI 220
Query: 131 ALSLSLTETQVKIWFQNRRTKWKKQNPGADTSA 163
A++L LTE QVK+WFQNRR KWK+ G +A
Sbjct: 221 AVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAA 253
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 89.7 bits (221), Expect = 7e-18
Identities = 78/242 (32%), Positives = 97/242 (40%), Gaps = 48/242 (19%)
Query: 14 RPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTT 73
R GA P C A + P P P + P P P PG A G
Sbjct: 65 RRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAP------RPYCPKEPGEARPSPGL--- 115
Query: 74 PQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALS 133
P G AT + K + + K RR RT FT QL LE F+ + Y V R LA
Sbjct: 116 PVGPATG---EAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGK 172
Query: 134 LSLTETQVKIWFQNRRTKWKKQ--------------------NPGADTSAP----TGGGG 169
++L E +V++WFQNRR KW++Q +P + T +P G GG
Sbjct: 173 VNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGG 232
Query: 170 GPGPGAGP-----GTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLS 224
GP GA P G LPGG + S P P PA Y P PFL+
Sbjct: 233 GPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPP-------PPPFLN 285
Query: 225 SP 226
SP
Sbjct: 286 SP 287
Score = 30.0 bits (66), Expect = 7.0
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 24 PAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPG 68
PAQ A P PP PP PP P+AP PP PG
Sbjct: 266 PAQSLPASYTP--PPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPG 308
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 89.4 bits (220), Expect = 1e-17
Identities = 83/280 (29%), Positives = 113/280 (40%), Gaps = 19/280 (6%)
Query: 3 SCCSDSADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPG 62
S S+S++ + P C P S L P +RQ + A G G
Sbjct: 98 SATSNSSNGGGPSKSGPPKCGPGTNS--TLTKQIFPWMKESRQTSKLKNNSPGTAEGCGG 155
Query: 63 GAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYL 122
G GG G+ G ++ S + K RARTA+T QLV LE +F RYL
Sbjct: 156 GGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK--RARTAYTSAQLVELEKEFHFNRYL 213
Query: 123 SVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP 182
R+ +A L+L+E Q+KIWFQNRR K+KK ++ +GG G P
Sbjct: 214 CRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTA 273
Query: 183 GGLSPL--------SPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA-VLSPFV 233
G ++ L SPSPP + A + P C A + +PA P V
Sbjct: 274 GFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHV 333
Query: 234 LGSQ--TYGAPAFYAPHLLSPVPLXXXXXXXPPRPLPGPA 271
L + YG P SPV + P P GP+
Sbjct: 334 LQANGGAYGTPTMQG----SPVYVGGGGYADPLPPPAGPS 369
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 89.0 bits (219), Expect = 1e-17
Identities = 73/210 (34%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 33 RPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP-----KRKR 87
+P +PP PP T PP +SP PG A P G +AT +K K R
Sbjct: 115 QPPQPPPPPPTL--PP----SSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESR 168
Query: 88 TGSDSKSG----------------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLA 131
S K+ +R RTA+T QLV LE +F RYL R+ +A
Sbjct: 169 QNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 228
Query: 132 LSLSLTETQVKIWFQNRRTKWKKQ-----------NPGADTSAPTGGGGGPGPGAGPGTG 180
L+LTE Q+KIWFQNRR K+KK + + S P GG G +G
Sbjct: 229 NLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPP 288
Query: 181 LPGGLSPLSPSPPMGAPL--GMHGPAGYPA 208
+P GL+ +PSPP A M+G A Y A
Sbjct: 289 VP-GLAYDAPSPPAFAKSQPNMYGLAAYTA 317
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 89.0 bits (219), Expect = 1e-17
Identities = 63/183 (34%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 32 LRPTRPPEPPSTRQRPPGPR--ENSPVAPGPPGGAAAPGG----AGTTP---QGTATAAK 82
L+P PP P PR E +P PG P G +AP A +P +G
Sbjct: 136 LQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVY 195
Query: 83 PKRKR-----TGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLT 137
P K+ G+P+R+RTA+T +Q++ LE +F RYL+ R+ +A +L L+
Sbjct: 196 PWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLS 255
Query: 138 ETQVKIWFQNRRTKWKKQN--PGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMG 195
E QVKIWFQNRR KWKK + P + GP T P L P P P
Sbjct: 256 ERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSP-HLHP-HPHPSTS 313
Query: 196 APL 198
P+
Sbjct: 314 TPV 316
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 88.6 bits (218), Expect = 2e-17
Identities = 72/214 (33%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 48 PGPRENSPVAPGPPGGAAAPGG----------AGTTPQGTATAAKPKRKRTGSDSKSG-- 95
P P AP P G AA + K + R S S+
Sbjct: 113 PYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPP 172
Query: 96 ----KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 151
KPR+ARTAFT QL LE F+ +YLSV +R+ LA SL+LT+TQVK W+QNRRTK
Sbjct: 173 VRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTK 232
Query: 152 WKKQNP-GADTSAPTGGGGG-----PGP---------GAGPGTGLPGGLSPLSPSPPMGA 196
WK+Q G + A G P P PG L P +P P +
Sbjct: 233 WKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQR 292
Query: 197 PLG----MHGPAGYPAHGPGGLVCAAQLPFLSSP 226
PL +HG G P A LP + P
Sbjct: 293 PLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 88.2 bits (217), Expect = 2e-17
Identities = 67/182 (36%), Positives = 91/182 (50%), Gaps = 47/182 (25%)
Query: 66 APGGAGTTPQGTATAAKPKRKRTGSDSK--SGKP---RRARTAFTYEQLVALENKFKATR 120
AP G ++P +P+++ + + +GKP R+ RT ++ QL AL+ +F+ T+
Sbjct: 120 APYGTSSSPANN----EPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQ 175
Query: 121 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK----------QNPGADTSAP------ 164
YL++ ER LA SL LT+TQVKIWFQNRR+K+KK Q+PGA S P
Sbjct: 176 YLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPV 235
Query: 165 -------------TGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLG----MHGPAGYP 207
GGGGPG G G G G G SPS A LG H +G
Sbjct: 236 SAPASWDFGVPQRMAGGGGPGSG-GSGAGSSGS----SPSSAASAFLGNYPWYHQTSGSA 290
Query: 208 AH 209
+H
Sbjct: 291 SH 292
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 87.4 bits (215), Expect = 4e-17
Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 63 GAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKP----RRARTAFTYEQLVALENKFKA 118
G AAPG AG + A + + G++S KP ++ RT F+ Q+ LE+ F
Sbjct: 189 GEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDM 248
Query: 119 TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 155
RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 249 KRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 285
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 87.4 bits (215), Expect = 4e-17
Identities = 56/140 (40%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKP 97
P P Q + V+ PGG A T Q T P++K KP
Sbjct: 88 PATPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPT-----PRQK---------KP 133
Query: 98 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 157
RR+RT FT QL+ LE KF+ +YLS +RL+LA SL LT+ QVK W+QNRR KWKK
Sbjct: 134 RRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL 193
Query: 158 GADTSAPTGGGGGPGPGAGP 177
APT G P + P
Sbjct: 194 KGGQEAPTKPKGRPKKNSIP 213
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 87.0 bits (214), Expect = 5e-17
Identities = 73/202 (36%), Positives = 91/202 (45%), Gaps = 32/202 (15%)
Query: 58 PGPPGGAAAPGGAGTT--PQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENK 115
P P AA+P G GT +G + R K+ + R+ R F+ Q++ALE +
Sbjct: 9 PQPGLNAASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERR 68
Query: 116 FKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG-------- 167
FK RYLS ER +LA +L LT TQVKIWFQNRR K K+Q D S G
Sbjct: 69 FKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQR--QDKSLELAGHPLTPRRV 126
Query: 168 -------GGGPGPGAGPGTGLPGGLSPLSPSPPMGA--PLGMHGPAGYPAHGPGGLVCAA 218
G P G GPG +P PSP A P +G +G G C A
Sbjct: 127 AVPVLVRDGKPCLGPGPG-------APAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYA 179
Query: 219 QLPFLSSPAVLSPFVLGSQTYG 240
P S PA +P L S +G
Sbjct: 180 GAP--SGPAPHTP--LASAGFG 197
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 85.1 bits (209), Expect = 2e-16
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 83 PKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVK 142
P GS + +GK RR RTAFT EQL+ LE +F +YLS+ ER +A +L L+E QVK
Sbjct: 233 PSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVK 292
Query: 143 IWFQNRRTKWKKQNPGADTSAPTG 166
IWFQNRR KWK+ G + ++ TG
Sbjct: 293 IWFQNRRAKWKRVKAG-NANSKTG 315
>gi|7657180 VENT homeobox [Homo sapiens]
Length = 258
Score = 84.7 bits (208), Expect = 2e-16
Identities = 57/170 (33%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 41 PSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRT----GSDSKSGK 96
P+ RP S PG GA P A + + ++ P +RT + + +
Sbjct: 31 PTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLR 90
Query: 97 PRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 156
R RTAFT EQ+ LE F+ +YLS ER LA + L+E Q+K WFQNRR K K+Q
Sbjct: 91 APRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQM 150
Query: 157 PGADTSAPTGGG-GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAG 205
+P G P +GL GL L P P+ P + P G
Sbjct: 151 QDPQLHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPG 200
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 83.2 bits (204), Expect = 7e-16
Identities = 58/169 (34%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 15 PRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTP 74
P + C PA S A P+ P PP+ Q AP P AA+ P
Sbjct: 91 PEKSQSLCEPAPLSGASASPS--PAPPACSQP----------APDHPSSAASK-----QP 133
Query: 75 QGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSL 134
K + G+P+R+RTA+T +Q++ LE +F RYL+ R+ +A SL
Sbjct: 134 IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
Query: 135 SLTETQVKIWFQNRRTKWKKQ----NPGADTSAPTGGGGGPGPGAGPGT 179
L+E Q+KIWFQNRR KWKK N ++ P G A PGT
Sbjct: 194 CLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGT 242
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 83.2 bits (204), Expect = 7e-16
Identities = 58/169 (34%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 15 PRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTP 74
P + C PA S A P+ P PP+ Q AP P AA+ P
Sbjct: 91 PEKSQSLCEPAPLSGASASPS--PAPPACSQP----------APDHPSSAASK-----QP 133
Query: 75 QGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSL 134
K + G+P+R+RTA+T +Q++ LE +F RYL+ R+ +A SL
Sbjct: 134 IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
Query: 135 SLTETQVKIWFQNRRTKWKKQ----NPGADTSAPTGGGGGPGPGAGPGT 179
L+E Q+KIWFQNRR KWKK N ++ P G A PGT
Sbjct: 194 CLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGT 242
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 82.8 bits (203), Expect = 9e-16
Identities = 68/200 (34%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 75 QGTATAAKPKRKRT--GSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLAL 132
Q + AA P + T G ++ K RR RT FT QL LE F T Y + R LAL
Sbjct: 74 QSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELAL 133
Query: 133 SLSLTETQVKIWFQNRRTKWKKQNPGA----------------------------DTSAP 164
+ LTE +V++WFQNRR K++KQ A T
Sbjct: 134 KIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPD 193
Query: 165 TGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAP--LGMHGPAGYPAHGPGGLVCAAQLPF 222
+ GG GP P P G GG PS P GAP G GP G P G GG AA
Sbjct: 194 STGGPGPNPNPTPSCGANGG-GGGGPS-PAGAPGAAGPGGPGGEP--GKGGAAAAAAAAA 249
Query: 223 LSSPAVLSPFVLGSQTYGAP 242
++ A + G G P
Sbjct: 250 AAAAAAAAAAAGGLAAAGGP 269
Score = 29.6 bits (65), Expect = 9.1
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 33 RPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP 83
+ + +P ST PGP N P P GA GG G +P G AA P
Sbjct: 185 KEAKSTDPDSTGG--PGPNPN----PTPSCGANGGGGGGPSPAGAPGAAGP 229
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 82.4 bits (202), Expect = 1e-15
Identities = 57/138 (41%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 98 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 157
+RARTA+T QLV LE +F RYL R+ +A L+LTE Q+KIWFQNRR K+KK
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 158 GADTSAPTGGGGGPGPGAGPGTGLPGGLS------------PLSPSPPMGAPLGMHG--P 203
G +GG PG G G L+ P SP P P G +G P
Sbjct: 94 GKGMLTSSGGQSPSRSPVPPGAG--GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 151
Query: 204 AGYPAHGPGGLVCAAQLP 221
A YPA P CA P
Sbjct: 152 ASYPASLPS---CAPPPP 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,273,122
Number of Sequences: 37866
Number of extensions: 2993144
Number of successful extensions: 35769
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 1296
Number of HSP's that attempted gapping in prelim test: 17469
Number of HSP's gapped (non-prelim): 15474
length of query: 653
length of database: 18,247,518
effective HSP length: 109
effective length of query: 544
effective length of database: 14,120,124
effective search space: 7681347456
effective search space used: 7681347456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.