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Search of human proteins with 239748296
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo ... 382 e-106
gi|239748296 PREDICTED: hypothetical protein [Homo sapiens] 382 e-106
gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo ... 382 e-106
gi|66529407 tensin [Homo sapiens] 37 0.008
gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo ... 36 0.022
gi|239746885 PREDICTED: hypothetical protein XP_002343869 [Homo ... 36 0.022
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 35 0.029
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 35 0.029
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 35 0.029
gi|157278361 nuclear localized factor 2 [Homo sapiens] 35 0.037
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.049
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 35 0.049
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.064
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 34 0.083
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 34 0.083
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 34 0.083
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 34 0.083
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 33 0.11
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 33 0.11
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 33 0.18
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 0.24
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 32 0.24
gi|157785645 SPEG complex locus [Homo sapiens] 32 0.24
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 32 0.32
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 32 0.32
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 32 0.32
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 32 0.32
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.32
gi|239752237 PREDICTED: hypothetical protein XP_002348168 [Homo ... 32 0.32
>gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo
sapiens]
Length = 186
Score = 382 bits (980), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD
Sbjct: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
Query: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA
Sbjct: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
Query: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD
Sbjct: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
Query: 181 RTDWPS 186
RTDWPS
Sbjct: 181 RTDWPS 186
>gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 382 bits (980), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD
Sbjct: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
Query: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA
Sbjct: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
Query: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD
Sbjct: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
Query: 181 RTDWPS 186
RTDWPS
Sbjct: 181 RTDWPS 186
>gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo
sapiens]
Length = 186
Score = 382 bits (980), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD
Sbjct: 1 MRTIGVPPTNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAAD 60
Query: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA
Sbjct: 61 RAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQA 120
Query: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD
Sbjct: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAAD 180
Query: 181 RTDWPS 186
RTDWPS
Sbjct: 181 RTDWPS 186
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 37.4 bits (85), Expect = 0.008
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Query: 45 LKGLNLALAPERPAADRAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPRE-----G 99
L G N + PA+ F + + PG +PP + GL +P P+E
Sbjct: 802 LAGPNQDFHSKSPASSSLPAF---LPTTHSPPGPQQPPASLPGLTAQPLLSPKEATSDPS 858
Query: 100 RTGQQ----LTFFVCSRMNG--GRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKM 153
RT ++ L V R+ G R + A PPA +R G +
Sbjct: 859 RTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASDGQYEN---------QSPE 909
Query: 154 ATTPPRPTLRNPVRCRASRL 173
AT+P P +R+PV+C + L
Sbjct: 910 ATSPRSPGVRSPVQCVSPEL 929
>gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo
sapiens]
Length = 96
Score = 35.8 bits (81), Expect = 0.022
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 34 RGDSLRSSSCGLK---GLNLALAPERPA-ADRAQLFAVAVGASGEAPGRPRPPGGVRGLG 89
RG SLR+SS G+ LA P P A ++QL G P+PPGG RG+
Sbjct: 18 RGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQPPGGGRGVA 67
Query: 90 RRPAAGPREG--RTGQ 103
AG R G R+G+
Sbjct: 68 NNGRAGSRAGGRRSGE 83
>gi|239746885 PREDICTED: hypothetical protein XP_002343869 [Homo
sapiens]
Length = 90
Score = 35.8 bits (81), Expect = 0.022
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 34 RGDSLRSSSCGLK---GLNLALAPERPA-ADRAQLFAVAVGASGEAPGRPRPPGGVRGLG 89
RG SLR+SS G+ LA P P A ++QL G P+PPGG RG+
Sbjct: 12 RGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQPPGGGRGVA 61
Query: 90 RRPAAGPREG--RTGQ 103
AG R G R+G+
Sbjct: 62 NNGRAGSRAGGRRSGE 77
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 35.4 bits (80), Expect = 0.029
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 7 PPTNRKANCMCEPSPGCTSHSSGN--RAARGDSLRSSSCGLKGLNLALAPER-PAADRAQ 63
PP EP+PG + G+ AA+ S ++ + + P R P RA
Sbjct: 121 PPPQAVQPRPSEPTPGSEALPPGSLPEAAQPPSRPAAQPPSRPAFRSPRPVRGPHPRRAV 180
Query: 64 LFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTG 102
+ AV G +AP R GG+R GRRP P+ GR G
Sbjct: 181 VVAVLFGV--QAPRRDVAEGGLRRDGRRPGLAPQRGRGG 217
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 35.4 bits (80), Expect = 0.029
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 115 GGRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLI 174
G RR+ A PP+ + RE+Q S S+ P ++ ++T PRPT RASRL
Sbjct: 1007 GSRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLST--PRPT-------RASRLR 1057
Query: 175 KGAAADRTD 183
+ D +D
Sbjct: 1058 RARLGDASD 1066
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapiens]
Length = 1554
Score = 35.4 bits (80), Expect = 0.029
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 115 GGRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLI 174
G RR+ A PP+ + RE+Q S S+ P ++ ++T PRPT RASRL
Sbjct: 1077 GSRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLST--PRPT-------RASRLR 1127
Query: 175 KGAAADRTD 183
+ D +D
Sbjct: 1128 RARLGDASD 1136
>gi|157278361 nuclear localized factor 2 [Homo sapiens]
Length = 364
Score = 35.0 bits (79), Expect = 0.037
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 39 RSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPRE 98
R+ SCG G P+ P G G P P PGG R AAGPR
Sbjct: 126 RAHSCGGGG-----GPDAP-------LGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRR 173
Query: 99 GRTGQQLTFFVCSRMNGGRRQAEAFPPAES---QREKQRAGSKSTAPTPFS 146
R + + + GR + A + S + E++RAGS+S A P S
Sbjct: 174 CRLLRVPDGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSS 224
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 34.7 bits (78), Expect = 0.049
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 10/131 (7%)
Query: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAA------DRAQLFAVAVGAS 72
PSP S + G RS + G + + P++P++ D+A A A
Sbjct: 300 PSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPAR 359
Query: 73 GEAPGRPRPPGGVRGLGRRPAAGP----REGRTGQQLTFFVCSRMNGGRRQAEAFPPAES 128
G+ PR +G G R A G R R ++ + GRR+ PP S
Sbjct: 360 GKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGS 419
Query: 129 QREKQRAGSKS 139
R RA S S
Sbjct: 420 SRSLSRARSSS 430
Score = 30.4 bits (67), Expect = 0.92
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 31/144 (21%)
Query: 20 SPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGRP 79
SPG SH + ++ SL S + + L+P+ R G+ + R
Sbjct: 247 SPGRRSHRHSSGSSHSPSLSSHYSDSRSPS-RLSPKHRDEGRK------TGSQRSSGSRS 299
Query: 80 RPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQRAGSKS 139
P G G G + R G +GQ+ S +GGR + PP K
Sbjct: 300 PSPSGGSGWG----SPQRNGGSGQR------SGAHGGRPGSAHSPP-----------DKP 338
Query: 140 TAPTPFSVRVRQKMATTPPRPTLR 163
++P+P RVR K A P P R
Sbjct: 339 SSPSP---RVRDKAAAAAPTPPAR 359
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 34.7 bits (78), Expect = 0.049
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 76 PGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQRA 135
P RP P GG + G P G EG Q+ G + ++ PP + Q Q+
Sbjct: 141 PERPPPQGGNQSQGPPPHPGKPEGPPPQE----------GNKSRSARSPPGKPQGPPQQE 190
Query: 136 GSKSTAPTP 144
G+K P P
Sbjct: 191 GNKPQGPPP 199
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 76 PGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQRA 135
P RP P GG + G P G E Q G + PP + +R +
Sbjct: 99 PERPPPQGGNQSQGTPPPPGKPERPPPQ----------GGNQSHRPPPPPGKPERPPPQG 148
Query: 136 GSKSTAPTP 144
G++S P P
Sbjct: 149 GNQSQGPPP 157
Score = 28.5 bits (62), Expect = 3.5
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 73 GEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREK 132
G+ GRP P GG + G P G E Q G + Q PP + +R
Sbjct: 76 GKPEGRP-PQGGNQSQGPPPHPGKPERPPPQ----------GGNQSQGTPPPPGKPERPP 124
Query: 133 QRAGSKSTAPTP 144
+ G++S P P
Sbjct: 125 PQGGNQSHRPPP 136
Score = 28.1 bits (61), Expect = 4.6
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 76 PGRPR---PPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREK 132
PG+P+ P GG + G P G EGR Q G + Q P + +R
Sbjct: 54 PGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQ----------GGNQSQGPPPHPGKPERPP 103
Query: 133 QRAGSKSTAPTP 144
+ G++S P
Sbjct: 104 PQGGNQSQGTPP 115
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.064
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 41 SSCGLKGLNLALAPERPAADRAQLFA--VAVGASGEAPGRPRPPGGVRGLGRRPAAGPRE 98
++ L +L A PA A L + V + A GR PP R R P + P +
Sbjct: 2357 TAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQ 2416
Query: 99 GRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPP 158
R + SRM Q+ PPA+ Q +S P+ FS + R +A T P
Sbjct: 2417 SRMTSERAPSPSSRMGQAPSQS-LLPPAQDQ-------PRSPVPSAFSDQSRCLIAQTTP 2468
Score = 29.6 bits (65), Expect = 1.6
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 18/163 (11%)
Query: 11 RKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVG 70
R+++ S +S SS + ++ S SSS + + + PA Q A+
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQ--ALPKP 2662
Query: 71 ASGEAPGRPRPPGGVRGLG-RRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQ 129
AS + P PPG R R+P R+ R+ L++ R + + + S
Sbjct: 2663 ASPKKP----PPGERRSRSPRKPIDSLRDSRS---LSYSPVERRRPSPQPSPRDQQSSSS 2715
Query: 130 REKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASR 172
R G + + +P R R+ T PR P+R R+SR
Sbjct: 2716 ERGSRRGQRGDSRSPSHKRRRE---TPSPR-----PMRHRSSR 2750
Score = 27.7 bits (60), Expect = 5.9
Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 26/193 (13%)
Query: 7 PPTNRKANCMCEPSPGCTSHSSGNRAARGDSL--------RSSSCGLKGLNLALAPERPA 58
PP +R++ + P P S SS R + RS S +GL + + R
Sbjct: 1721 PPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE 1780
Query: 59 ADRAQLFAVAVGASGEAPGRPRPPGGVRG---LGRRPAAGPREGRTGQQLTFFVCSRMNG 115
R G+S ++ R R R RR +G +Q + SR
Sbjct: 1781 KTRTTRRRDRSGSS-QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRR 1839
Query: 116 GRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPV------RCR 169
GR + PP +R + R T+P P+ + T R R P+ R R
Sbjct: 1840 GRSRT---PPTSRKRSRSR-----TSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
Query: 170 ASRLIKGAAADRT 182
S + + + RT
Sbjct: 1892 TSPVSRRRSRSRT 1904
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 33.9 bits (76), Expect = 0.083
Identities = 49/183 (26%), Positives = 68/183 (37%), Gaps = 50/183 (27%)
Query: 9 TNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVA 68
+N+ + C P PG S S RS S LK L P R A
Sbjct: 30 SNQPPSRTCPPLPGPPSRS-----------RSPSSRLK---LPADPPR-----------A 64
Query: 69 VGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAES 128
+ S E P P PP LG R AAGP R++ + + P +
Sbjct: 65 LPGSPEPPPPP-PPAAPHVLGARVAAGPTH-------------RLSASHSRVSSRGPVGT 110
Query: 129 QREK----QRAGSKSTAPTPFSVRVRQKMA----TTPPRPTLRNPVRCRASRLIKGAAAD 180
+ ++ +RAG++ + P S R R A ++PP P P R R+ L A
Sbjct: 111 KPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPPP---PSRARSRSLRLSAPGS 167
Query: 181 RTD 183
R D
Sbjct: 168 RHD 170
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.083
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 76 PGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQR--EKQ 133
P R R PG R AG R GR + V SR G A P + +
Sbjct: 424 PARRRNPGAA---ARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAADRTD 183
R G ++ AP P V + + A P R T R P AAA RT+
Sbjct: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREP----------DAAAQRTE 520
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.083
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 76 PGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQR--EKQ 133
P R R PG R AG R GR + V SR G A P + +
Sbjct: 424 PARRRNPGAA---ARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRASRLIKGAAADRTD 183
R G ++ AP P V + + A P R T R P AAA RT+
Sbjct: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREP----------DAAAQRTE 520
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 33.9 bits (76), Expect = 0.083
Identities = 49/183 (26%), Positives = 68/183 (37%), Gaps = 50/183 (27%)
Query: 9 TNRKANCMCEPSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVA 68
+N+ + C P PG S S RS S LK L P R A
Sbjct: 30 SNQPPSRTCPPLPGPPSRS-----------RSPSSRLK---LPADPPR-----------A 64
Query: 69 VGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAES 128
+ S E P P PP LG R AAGP R++ + + P +
Sbjct: 65 LPGSPEPPPPP-PPAAPHVLGARVAAGPTH-------------RLSASHSRVSSRGPVGT 110
Query: 129 QREK----QRAGSKSTAPTPFSVRVRQKMA----TTPPRPTLRNPVRCRASRLIKGAAAD 180
+ ++ +RAG++ + P S R R A ++PP P P R R+ L A
Sbjct: 111 KPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPPP---PSRARSRSLRLSAPGS 167
Query: 181 RTD 183
R D
Sbjct: 168 RHD 170
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 33.5 bits (75), Expect = 0.11
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 57 PAADRAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTG 102
P RA + AV G +AP R GG+R GRRP P+ GR G
Sbjct: 204 PHPRRAVVVAVLFGV--QAPRRDVAEGGLRRDGRRPGLAPQRGRGG 247
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 11 RKANCMCEPSPGCTSHSSGNRAARGDSLRSSS--------CGLKGLNLALAPERPAADRA 62
R + E H S R A G LR S C ++G P RP R+
Sbjct: 305 RAVSGRAEAQRRAADHHSRLRTALGSGLRVCSSRPAAPSVCPVRG-----PPPRPGTVRS 359
Query: 63 QLFAVAVGASGEAPGRPRPPGGVRGLG 89
QL A A E G PRPP G R G
Sbjct: 360 QLGARA----NEGGGAPRPPAGARVFG 382
Score = 29.6 bits (65), Expect = 1.6
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 24 TSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLF-AVAVGASGEAPGRPRPP 82
T + G ARG G +G A E A+ A + A A G +P P PP
Sbjct: 570 TEAARGAEEARGGG---GGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAPGPP 626
Query: 83 GGVR---GLGRRP-----AAGPREGRTGQQLTFFVCSRMNGGRRQAEAF 123
GG G G P AA P+ RTG S+ RR AF
Sbjct: 627 GGAAAPGGAGTTPQGTATAAKPKRKRTGSD------SKSGKPRRARTAF 669
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 33.5 bits (75), Expect = 0.11
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 57 PAADRAQLFAVAVGASGEAPGRPRPPGGVRGLGRRPAAGPREGRTG 102
P RA + AV G +AP R GG+R GRRP P+ GR G
Sbjct: 151 PHPRRAVVVAVLFGV--QAPRRDVAEGGLRRDGRRPGLAPQRGRGG 194
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 32.7 bits (73), Expect = 0.18
Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 66 AVAVGASGEAPG--RPRPPGGVRGLGRRPAAGPR---EGRTGQQLTFFVCSRMNGGRRQA 120
A A GA G APG P PP R P R + R Q FF+ + GR
Sbjct: 4 AAAGGAPGPAPGPAGPPPPAAPTSAARAPPQALRRRGDSRRRQAALFFLNNISLDGR--- 60
Query: 121 EAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRA 170
PP+ G P P R+ A PP P P R A
Sbjct: 61 ---PPS--------LGPGGEKPPPPPAEAREPPAPPPPEPPTGLPARTPA 99
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.3 bits (72), Expect = 0.24
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAV-AVGASGE--- 74
P P + SG+R G + + + G G A P+ P D+ + A G G
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 75 -----APGRPRPPGGVRGLGRRPAAGPR 97
APG P P G +G AGPR
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 79 PRPPGGVRGLGR-RPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAF-----PPAESQREK 132
P PPGG GLG R G GR G++ C R + R + + PP S
Sbjct: 81 PAPPGGAGGLGEGRQDGGGEVGRAGRR-----CCRRHRRLRSSRLWSFKLTPPGRSCAGA 135
Query: 133 QRAGSKSTAPTPFS 146
G + P PFS
Sbjct: 136 GSRGESKSFPWPFS 149
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 32.3 bits (72), Expect = 0.24
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query: 19 PSPGCTSHSSGN---------------RAARGDSLRSSSCGLKGLNLALAPERPAADRAQ 63
PSPG T + G R RG GL+G L RA+
Sbjct: 2046 PSPGATRLARGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLL-----ESLGGRAR 2100
Query: 64 LFAVAVGASGEAPGRPRPPGGVRGLGRRPA-----AGPR--EGRTGQQLTFFVCSRMNGG 116
+A AS EA +PP RGL + + A PR R G L V G
Sbjct: 2101 DPRMARAASSEAAPHHQPPLENRGLQKSSSFSQGEAEPRGRHRRAGAPLEIPVARL---G 2157
Query: 117 RRQAEAFPPAESQREKQRAG-SKSTAPTPFSVRVRQKMATTP---PRPTLRNPVRCRA 170
R+ + P + E Q + ++ +AP P + + + ATTP P+P P + +A
Sbjct: 2158 ARRLQESPSLSALSEAQPSSPARPSAPKPSTPKSAEPSATTPSDAPQPPAPQPAQDKA 2215
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 75 APGRPRPPGGVRGLG-RRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQ 133
AP PRPP G L RP P+ R PPA S E++
Sbjct: 574 APTPPRPPPGPATLAPSRPLLVPKAERLS---------------------PPAPSGSERR 612
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTL 162
+G S+ P P ++ VR +PP+P L
Sbjct: 613 LSGDLSSMPGPGTLSVR----VSPPQPIL 637
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 75 APGRPRPPGGVRGLG-RRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQ 133
AP PRPP G L RP P+ R PPA S E++
Sbjct: 574 APTPPRPPPGPATLAPSRPLLVPKAERLS---------------------PPAPSGSERR 612
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTL 162
+G S+ P P ++ VR +PP+P L
Sbjct: 613 LSGDLSSMPGPGTLSVR----VSPPQPIL 637
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 75 APGRPRPPGGVRGLG-RRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQ 133
AP PRPP G L RP P+ R PPA S E++
Sbjct: 574 APTPPRPPPGPATLAPSRPLLVPKAERLS---------------------PPAPSGSERR 612
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTL 162
+G S+ P P ++ VR +PP+P L
Sbjct: 613 LSGDLSSMPGPGTLSVR----VSPPQPIL 637
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 75 APGRPRPPGGVRGLG-RRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQ 133
AP PRPP G L RP P+ R PPA S E++
Sbjct: 574 APTPPRPPPGPATLAPSRPLLVPKAERLS---------------------PPAPSGSERR 612
Query: 134 RAGSKSTAPTPFSVRVRQKMATTPPRPTL 162
+G S+ P P ++ VR +PP+P L
Sbjct: 613 LSGDLSSMPGPGTLSVR----VSPPQPIL 637
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.32
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 25/145 (17%)
Query: 60 DRAQLFAVAVGASGEAPG--RPRPPGGVR-----------------GLGRRPAAGPREGR 100
D+A+ A A + APG PRPPG R +GR+P A G
Sbjct: 6 DKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65
Query: 101 TGQQLTFFVC----SRMNGGRRQAEAFPPAESQREKQRAGSKSTAPTPFSVRVRQKMATT 156
G + +R G + A P S R ++ +K+T+P P S R TT
Sbjct: 66 GGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRAS-GTT 124
Query: 157 PPRPTLRNPVRCRASRLI-KGAAAD 180
P P + +R A + +G A +
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATE 149
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAP--------ERPAADRAQLFAVAVG 70
PSPG +SG +AA G +SS K L P + R L A A G
Sbjct: 726 PSPG----TSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEG 781
Query: 71 ASGEAPGRP--RPPGGVRGLGRRPAAGPREGRTGQQLT 106
A+G + G P GGV G R + GR + L+
Sbjct: 782 AAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLS 819
>gi|239752237 PREDICTED: hypothetical protein XP_002348168 [Homo
sapiens]
Length = 217
Score = 32.0 bits (71), Expect = 0.32
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 20 SPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGRP 79
+PG +G+R R +LR C + ++ + +P+ R QL V G +G
Sbjct: 44 TPGYMPIRTGSRPVRRAALRDKGCAQRHRHVEVCEPQPS--RRQLVQVGSGRAGVPIAAQ 101
Query: 80 RPPGGVRGLGRRPAAGPREGRTGQQLTFFVCSRMNGGRRQAEAFPPAESQREKQR--AGS 137
P V G + G+ Q G+ + P R AG
Sbjct: 102 VPIAEVVGKDQHDVGRTGNGQASSQ-----------GQEEGPRCPHGHGTEGSYRETAGW 150
Query: 138 KSTAPTPFSVRVRQKMATTPPRPTLRNPVRCRAS 171
T P P +++ ++ + PPR +R R R S
Sbjct: 151 DGTPPGPGHLQILER-RSDPPRLAVRAQGRGRKS 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,244,621
Number of Sequences: 37866
Number of extensions: 510069
Number of successful extensions: 3160
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 2942
Number of HSP's gapped (non-prelim): 479
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.