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Search of human proteins with 239748288
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748288 PREDICTED: hypothetical protein [Homo sapiens] 265 7e-72
gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo ... 265 7e-72
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ... 232 5e-62
gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo ... 34 0.028
gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo ... 34 0.028
gi|205277468 leucine rich repeat containing 15 isoform a [Homo s... 31 0.24
gi|18677767 leucine rich repeat containing 15 isoform b [Homo sa... 31 0.24
gi|18079216 CASK interacting protein 1 [Homo sapiens] 31 0.31
gi|4507691 transformation/transcription domain-associated protei... 27 4.5
gi|190014625 DIS3 mitotic control isoform b [Homo sapiens] 27 4.5
gi|190014623 DIS3 mitotic control isoform a [Homo sapiens] 27 4.5
gi|190885497 Rho guanine nucleotide exchange factor 3 isoform 2 ... 27 5.8
gi|190885495 Rho guanine nucleotide exchange factor 3 isoform 1 ... 27 5.8
gi|9506401 Rho guanine nucleotide exchange factor 3 isoform 3 [H... 27 5.8
gi|38348362 short-chain dehydrogenase/reductase 10 isoform e [Ho... 27 5.8
gi|38424079 short-chain dehydrogenase/reductase 10 isoform c [Ho... 27 5.8
gi|38424085 short-chain dehydrogenase/reductase 10 isoform b [Ho... 27 5.8
gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo... 26 7.6
gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo... 26 7.6
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens] 26 9.9
>gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 265 bits (677), Expect = 7e-72
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH 60
MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH
Sbjct: 1 MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH 60
Query: 61 VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH 120
VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH
Sbjct: 61 VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH 120
Query: 121 LVGVEEVTP 129
LVGVEEVTP
Sbjct: 121 LVGVEEVTP 129
>gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo
sapiens]
Length = 129
Score = 265 bits (677), Expect = 7e-72
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH 60
MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH
Sbjct: 1 MTSLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLH 60
Query: 61 VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH 120
VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH
Sbjct: 61 VVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLH 120
Query: 121 LVGVEEVTP 129
LVGVEEVTP
Sbjct: 121 LVGVEEVTP 129
>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
sapiens]
Length = 186
Score = 232 bits (592), Expect = 5e-62
Identities = 117/127 (92%), Positives = 119/127 (93%), Gaps = 1/127 (0%)
Query: 3 SLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 62
+LI S +AG PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV
Sbjct: 61 ALIESCLGTASLAG-PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 119
Query: 63 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 122
SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV
Sbjct: 120 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 179
Query: 123 GVEEVTP 129
GVEEVTP
Sbjct: 180 GVEEVTP 186
>gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo
sapiens]
Length = 339
Score = 34.3 bits (77), Expect = 0.028
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 38 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
>gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo
sapiens]
Length = 339
Score = 34.3 bits (77), Expect = 0.028
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 38 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
>gi|205277468 leucine rich repeat containing 15 isoform a [Homo
sapiens]
Length = 587
Score = 31.2 bits (69), Expect = 0.24
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 67 DGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALH--HLHGVPAGLHDGL 119
DG H+V L LGK L HI P L +L L L+ L +P G DGL
Sbjct: 172 DGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGL 226
>gi|18677767 leucine rich repeat containing 15 isoform b [Homo
sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 0.24
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 67 DGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALH--HLHGVPAGLHDGL 119
DG H+V L LGK L HI P L +L L L+ L +P G DGL
Sbjct: 166 DGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGL 220
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 30.8 bits (68), Expect = 0.31
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 34 PVPVEDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLGLEHIKPPE 93
PVP +PEDG + + Q R + V + + V +LEL +G G +PPE
Sbjct: 966 PVPDAEPEDGLLGVRAQCRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARRPPE 1025
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 26.9 bits (58), Expect = 4.5
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 37 VEDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGL--GKLGLEHIKPPES 94
V P++ +++++ ++ ENFE V SP H++ L L G++ KP +
Sbjct: 31 VNTPDETKLKMMQEVSENFENV--TSSPQYSTFLEHIIPRFLTFLQDGEVQFLQEKPAQ- 87
Query: 95 IVLHDLGYLALHHLHGVPAGLHDGLHLVGVEEV 127
L L L +H +P H H V V
Sbjct: 88 ----QLRKLVLEIIHRIPTNEHLRPHTKNVLSV 116
>gi|190014625 DIS3 mitotic control isoform b [Homo sapiens]
Length = 928
Score = 26.9 bits (58), Expect = 4.5
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 42 DGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLG 101
+ V + G EN E +L + VH +V +EL L P S+VLHD G
Sbjct: 230 EATVWIHGDNEENKEIILQGLKHLNRAVHEDIVAVEL-----LPKSQWVAPSSVVLHDEG 284
>gi|190014623 DIS3 mitotic control isoform a [Homo sapiens]
Length = 958
Score = 26.9 bits (58), Expect = 4.5
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 42 DGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLG 101
+ V + G EN E +L + VH +V +EL L P S+VLHD G
Sbjct: 260 EATVWIHGDNEENKEIILQGLKHLNRAVHEDIVAVEL-----LPKSQWVAPSSVVLHDEG 314
>gi|190885497 Rho guanine nucleotide exchange factor 3 isoform 2
[Homo sapiens]
Length = 532
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 31 YLSPVPV-----EDPEDGRVRLVGQIRENF 55
Y P+PV ED +DG VRL G +R F
Sbjct: 381 YRQPIPVKDLLLEDLQDGEVRLGGSLRGAF 410
>gi|190885495 Rho guanine nucleotide exchange factor 3 isoform 1
[Homo sapiens]
Length = 558
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 31 YLSPVPV-----EDPEDGRVRLVGQIRENF 55
Y P+PV ED +DG VRL G +R F
Sbjct: 407 YRQPIPVKDLLLEDLQDGEVRLGGSLRGAF 436
>gi|9506401 Rho guanine nucleotide exchange factor 3 isoform 3 [Homo
sapiens]
Length = 526
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 31 YLSPVPV-----EDPEDGRVRLVGQIRENF 55
Y P+PV ED +DG VRL G +R F
Sbjct: 375 YRQPIPVKDLLLEDLQDGEVRLGGSLRGAF 404
>gi|38348362 short-chain dehydrogenase/reductase 10 isoform e [Homo
sapiens]
Length = 315
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 92 PESIV------LHDLGYLALHHLHGVPAG 114
PES+V L L YL L+H+ G PAG
Sbjct: 94 PESVVQFALDKLGGLDYLVLNHIGGAPAG 122
>gi|38424079 short-chain dehydrogenase/reductase 10 isoform c [Homo
sapiens]
Length = 199
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 92 PESIV------LHDLGYLALHHLHGVPAG 114
PES+V L L YL L+H+ G PAG
Sbjct: 7 PESVVQFALDKLGGLDYLVLNHIGGAPAG 35
>gi|38424085 short-chain dehydrogenase/reductase 10 isoform b [Homo
sapiens]
Length = 286
Score = 26.6 bits (57), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 92 PESIV------LHDLGYLALHHLHGVPAG 114
PES+V L L YL L+H+ G PAG
Sbjct: 94 PESVVQFALDKLGGLDYLVLNHIGGAPAG 122
>gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo
sapiens]
Length = 594
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 28 LHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVVSPALDG 68
L S L P D V LV Q+ E+ +A+ HV SPAL G
Sbjct: 442 LLSDLRQRPEWDKHYRSVELVQQVDED-DAIYHVTSPALGG 481
>gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo
sapiens]
Length = 607
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 28 LHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVVSPALDG 68
L S L P D V LV Q+ E+ +A+ HV SPAL G
Sbjct: 442 LLSDLRQRPEWDKHYRSVELVQQVDED-DAIYHVTSPALGG 481
>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
Length = 461
Score = 25.8 bits (55), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 58 VLHVVSPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHD 99
+LH S A +GV H + + L L K+G E + +++ D
Sbjct: 154 ILHPSSQAPNGVKSHFIEIFLEELTKVGAEELTADQNLKFID 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.143 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,060
Number of Sequences: 37866
Number of extensions: 288632
Number of successful extensions: 537
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 20
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.