Guide to the Human Genome
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Name: LOC100287464 Sequence: fasta or formatted (129aa) NCBI GI: 239748288
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {129aa} PREDICTED: hypothetical protein XP_002342448
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          5           1
 C cysteine            0.0          0           0
 D aspartate           3.9          5           1
 E glutamate           9.3         12           2
 F phenylalanine       0.8          1           1
 G glycine            10.9         14           1
 H histidine           9.3         12           2
 I isoleucine          4.7          6           1
 K lysine              1.6          2           1
 L leucine            17.1         22           1
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline             8.5         11           2
 Q glutamine           1.6          2           1
 R arginine            3.9          5           1
 S serine              5.4          7           2
 T threonine           1.6          2           1
 V valine             13.2         17           3
 W tryptophan          0.8          1           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287464          1.000   PREDICTED: hypothetical protein XP_002342448 
LOC100291947          0.863   PREDICTED: hypothetical protein XP_002345753 
LOC100292049          0.037   PREDICTED: hypothetical protein XP_002344884 
LOC100289438          0.037   PREDICTED: hypothetical protein XP_002343385 
LRRC15                0.025   leucine rich repeat containing 15 isoform a 
LRRC15                0.025   leucine rich repeat containing 15 isoform b 
CASKIN1               0.025   CASK interacting protein 1 
TRRAP                 0.008   transformation/transcription domain-associated protei...
DIS3                  0.008   DIS3 mitotic control isoform b 
DIS3                  0.008   DIS3 mitotic control isoform a 
ARHGEF3               0.008   Rho guanine nucleotide exchange factor 3 isoform 2 ...
ARHGEF3               0.008   Rho guanine nucleotide exchange factor 3 isoform 1 ...
ARHGEF3               0.008   Rho guanine nucleotide exchange factor 3 isoform 3 [H...
HSD11B1L              0.008   short-chain dehydrogenase/reductase 10 isoform e [Ho...
HSD11B1L              0.008   short-chain dehydrogenase/reductase 10 isoform c [Ho...
HSD11B1L              0.008   short-chain dehydrogenase/reductase 10 isoform b [Ho...
ACOT11                0.004   thioesterase, adipose associated isoform BFIT2 [Homo...
ACOT11                0.004   thioesterase, adipose associated isoform BFIT1 [Homo...
RRP1                  0.004   ribosomal RNA processing 1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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