Guide to the Human Genome
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Name: LOC100289438 Sequence: fasta or formatted (339aa) NCBI GI: 239745187
Description:

PREDICTED: hypothetical protein XP_002343385

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         37           2
 C cysteine            2.4          8           2
 D aspartate           5.3         18           2
 E glutamate           8.0         27           2
 F phenylalanine       1.5          5           1
 G glycine             7.7         26           2
 H histidine           5.9         20           1
 I isoleucine          3.5         12           2
 K lysine              2.7          9           1
 L leucine            11.5         39           2
 M methionine          1.5          5           1
 N asparagine          2.4          8           1
 P proline             6.8         23           2
 Q glutamine           3.8         13           1
 R arginine            3.8         13           2
 S serine             11.2         38           3
 T threonine           2.9         10           2
 V valine              6.8         23           2
 W tryptophan          1.5          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343385 
LOC100292049          1.000   PREDICTED: hypothetical protein XP_002344884 
LOC100291947          0.014   PREDICTED: hypothetical protein XP_002345753 
LOC100287464          0.014   PREDICTED: hypothetical protein 
LOC100287464          0.014   PREDICTED: hypothetical protein XP_002342448 
NCOA6                 0.011   nuclear receptor coactivator 6 
LOC100292713          0.009   PREDICTED: similar to AGAP002076-PA 
LOC100291037          0.009   PREDICTED: hypothetical protein XP_002347503 
LOC100287214          0.009   PREDICTED: hypothetical protein XP_002343322 
ZNF862                0.008   zinc finger protein 862 
MKL1                  0.008   megakaryoblastic leukemia 1 protein 
WDR62                 0.006   WD repeat domain 62 isoform 1 
WDR62                 0.006   WD repeat domain 62 isoform 2 
SNW1                  0.006   SKI-interacting protein 
LOC100133450          0.005   PREDICTED: hypothetical protein, partial 
LOC100287975          0.005   PREDICTED: hypothetical protein XP_002342501, parti...
MLL3                  0.005   myeloid/lymphoid or mixed-lineage leukemia 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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