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Search of human proteins with 239747978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo ... 320 3e-88
gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo ... 320 3e-88
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 273 3e-74
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 37 0.009
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] 37 0.009
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ... 37 0.009
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 35 0.033
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 35 0.033
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 35 0.033
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens] 32 0.28
gi|194394143 forkhead box A2 isoform 1 [Homo sapiens] 32 0.28
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 31 0.36
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 31 0.36
gi|6912444 potassium voltage-gated channel, subfamily G, member ... 31 0.36
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 31 0.47
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 30 0.62
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 30 0.62
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 30 0.62
gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo ... 30 0.62
gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo ... 30 0.62
gi|238550198 synaptotagmin III [Homo sapiens] 30 0.62
gi|238550196 synaptotagmin III [Homo sapiens] 30 0.62
gi|14150054 synaptotagmin III [Homo sapiens] 30 0.62
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 30 0.81
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 30 1.1
gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens] 30 1.1
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi... 30 1.1
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 29 1.4
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 29 1.4
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 29 1.4
>gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
sapiens]
Length = 153
Score = 320 bits (820), Expect = 3e-88
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
>gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo
sapiens]
Length = 153
Score = 320 bits (820), Expect = 3e-88
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 273 bits (699), Expect = 3e-74
Identities = 134/149 (89%), Positives = 135/149 (90%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRG 149
QQQDQAE + GG R A G RG
Sbjct: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRG 149
>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
P A HH RP A RRHH QQQ + E + PG R GR GA G G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RG 149
+G
Sbjct: 69 QG 70
>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
P A HH RP A RRHH QQQ + E + PG R GR GA G G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RG 149
+G
Sbjct: 69 QG 70
>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
sapiens]
Length = 195
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
P A HH RP A RRHH QQQ + E + PG R GR GA G G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RG 149
+G
Sbjct: 69 QG 70
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 34.7 bits (78), Expect = 0.033
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
G G +GA L G W+ PAAA P PAA + ++D G
Sbjct: 196 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 248
Query: 135 GGRHGRGARGSGGRG 149
GG HG SGGRG
Sbjct: 249 GGGHGWHCGRSGGRG 263
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 34.7 bits (78), Expect = 0.033
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
G G +GA L G W+ PAAA P PAA + ++D G
Sbjct: 179 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 231
Query: 135 GGRHGRGARGSGGRG 149
GG HG SGGRG
Sbjct: 232 GGGHGWHCGRSGGRG 246
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 34.7 bits (78), Expect = 0.033
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
G G +GA L G W+ PAAA P PAA + ++D G
Sbjct: 371 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 423
Query: 135 GGRHGRGARGSGGRG 149
GG HG SGGRG
Sbjct: 424 GGGHGWHCGRSGGRG 438
>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
Length = 457
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 43 SGCVLRNDVWIVIGGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPA 102
+GC LR +L A + A A +G + G ++ +GE A +PA
Sbjct: 245 NGCYLRRQKRFKCEKQL-----ALKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPA 299
Query: 103 AAHHPTRPAAPCRRHHQ----QQQQDQAEVQSGPEPGGRHGR 140
P A+PC+ H + + + A S PEP G+
Sbjct: 300 GTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQ 341
>gi|194394143 forkhead box A2 isoform 1 [Homo sapiens]
Length = 463
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 43 SGCVLRNDVWIVIGGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPA 102
+GC LR +L A + A A +G + G ++ +GE A +PA
Sbjct: 251 NGCYLRRQKRFKCEKQL-----ALKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPA 305
Query: 103 AAHHPTRPAAPCRRHHQ----QQQQDQAEVQSGPEPGGRHGR 140
P A+PC+ H + + + A S PEP G+
Sbjct: 306 GTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQ 347
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 0.36
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 28 HIGQNTELCPQTATVSGCVLRNDVWIVIGGELLEALGAASDLAFIASAG------AQGLL 81
H G N P V D W+ + G LA + G AQ +L
Sbjct: 208 HGGGNRPSAPSRVAVE------DPWLEVSSSGRGGPGRGQGLAGSQARGTRDPEAAQAML 261
Query: 82 GHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRR 116
H+GA+L + WR+ P R A CRR
Sbjct: 262 HHLGAQLQAPGNFQAGWRA-----QPRRTGARCRR 291
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 31.2 bits (69), Expect = 0.36
Identities = 35/143 (24%), Positives = 47/143 (32%), Gaps = 22/143 (15%)
Query: 18 PTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELLEALGAASDLAFIASAGA 77
P P G G+ E C ++V G L+ + GA+ D+ G
Sbjct: 538 PARGDPGIQGIKGEKGEPCLSCSSVVGAQ-----------HLVSSTGASGDVGS-PGFGL 585
Query: 78 QGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAA----------PCRRHHQQQQQDQAE 127
GL G G L GE+ F PA + P P PC +
Sbjct: 586 PGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGD 645
Query: 128 VQSGPEPGGRHGRGARGSGGRGL 150
V+ PG +G G G GL
Sbjct: 646 VRVVALPGPSGEKGEPGPPGFGL 668
>gi|6912444 potassium voltage-gated channel, subfamily G, member 2
[Homo sapiens]
Length = 466
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 114 CRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLL 151
C R ++++++ AE ++GP G G AR G RG L
Sbjct: 119 CLRRLRRREEEAAEARAGPTERGAQGSPARALGPRGRL 156
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 30.8 bits (68), Expect = 0.47
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 107 PTRPAAPCRRHHQ-----------------------QQQQDQAEVQSGPEPG-------G 136
P RPA PCRR Q + Q + + GP PG G
Sbjct: 224 PGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGG 283
Query: 137 RHGRGARGSGGRG 149
+ RG RG GRG
Sbjct: 284 QSSRGGRGGRGRG 296
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 30.4 bits (67), Expect = 0.62
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
AA P PA ++ +D+AE + P G G G GG + G
Sbjct: 2 AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 30.4 bits (67), Expect = 0.62
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
AA P PA ++ +D+AE + P G G G GG + G
Sbjct: 2 AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 30.4 bits (67), Expect = 0.62
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 91 GERHEFAWRSPAAAHHPTRPAAPC-RRHHQQQQQDQAEVQSGPEPGGRHGRGARGS 145
G + A + P A P P AP ++H QQ Q+QA + G GG G G + S
Sbjct: 27 GGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGG--GGGGKSS 80
>gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo
sapiens]
Length = 124
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 118 HQQQQQDQAEVQSGPEP-GGRHGRGARGSGGRG 149
H Q D V G P GR RGARG+GG G
Sbjct: 11 HFAQSNDSLMVARGENPRSGRRERGARGAGGAG 43
>gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo
sapiens]
Length = 132
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 118 HQQQQQDQAEVQSGPEP-GGRHGRGARGSGGRG 149
H Q D V G P GR RGARG+GG G
Sbjct: 11 HFAQSNDSLMVARGENPRSGRRERGARGAGGAG 43
>gi|238550198 synaptotagmin III [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 0.62
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 56 GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
GG L + LG LA + G L +G L+G H A AAHHP
Sbjct: 93 GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140
>gi|238550196 synaptotagmin III [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 0.62
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 56 GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
GG L + LG LA + G L +G L+G H A AAHHP
Sbjct: 93 GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140
>gi|14150054 synaptotagmin III [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 0.62
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 56 GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
GG L + LG LA + G L +G L+G H A AAHHP
Sbjct: 93 GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 30.0 bits (66), Expect = 0.81
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 79 GLLGHIGAELLVGER--HEFAWRSPAAAHH----PTRPAAPCRRHHQQQQQDQAEVQSGP 132
GLLG G+ +++ +R A RS AA PA P + Q ++SG
Sbjct: 24 GLLGEAGSPVVLAQRALETPALRSAAAVRRVGESEQAPAGPQSDRGRPGQVPDRCLRSGR 83
Query: 133 EPGGRHGRGARGSGGRG 149
E G R G G GG G
Sbjct: 84 ERGSRSGPGPAERGGGG 100
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 29.6 bits (65), Expect = 1.1
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 73 ASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCR--RHHQQQQQDQAEVQS 130
A A A GL A A + AA P+ +APC H Q A +
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAA 405
Query: 131 GPEPGGRHGRGARGSGGRG 149
G R G G G GG G
Sbjct: 406 AAALGSRGGGGGGGGGGGG 424
>gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]
Length = 719
Score = 29.6 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 18 PTSPSPRHYGHIGQNTELCPQTATVSGC 45
P S +P+HYG E CP TVS C
Sbjct: 298 PESKAPKHYGDTTLLREPCPPERTVSPC 325
>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
sapiens]
Length = 1435
Score = 29.6 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 18 PTSPSPRHYGHIGQNTELCPQTATVSGC 45
P S +P+HYG E CP TVS C
Sbjct: 298 PESKAPKHYGDTTLLREPCPPERTVSPC 325
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
Query: 63 LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
L AA L + +AGA+ L G GA + VG+ PA P P +
Sbjct: 13 LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69
Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
+ QQQQQ Q + Q P+P G RG G+GG
Sbjct: 70 SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
Query: 63 LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
L AA L + +AGA+ L G GA + VG+ PA P P +
Sbjct: 13 LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69
Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
+ QQQQQ Q + Q P+P G RG G+GG
Sbjct: 70 SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
Query: 63 LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
L AA L + +AGA+ L G GA + VG+ PA P P +
Sbjct: 13 LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69
Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
+ QQQQQ Q + Q P+P G RG G+GG
Sbjct: 70 SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,424,388
Number of Sequences: 37866
Number of extensions: 371939
Number of successful extensions: 2551
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2371
Number of HSP's gapped (non-prelim): 234
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.