Guide to the Human Genome
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Search of human proteins with 239747978

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo ...   320   3e-88
gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo ...   320   3e-88
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]          273   3e-74
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]            37   0.009
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]            37   0.009
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ...    37   0.009
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]            35   0.033
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]            35   0.033
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]            35   0.033
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]                   32   0.28 
gi|194394143 forkhead box A2 isoform 1 [Homo sapiens]                  32   0.28 
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            31   0.36 
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        31   0.36 
gi|6912444 potassium voltage-gated channel, subfamily G, member ...    31   0.36 
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    31   0.47 
gi|229577180 MPN domain containing isoform 2 [Homo sapiens]            30   0.62 
gi|31542699 MPN domain containing isoform 1 [Homo sapiens]             30   0.62 
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]           30   0.62 
gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo ...    30   0.62 
gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo ...    30   0.62 
gi|238550198 synaptotagmin III [Homo sapiens]                          30   0.62 
gi|238550196 synaptotagmin III [Homo sapiens]                          30   0.62 
gi|14150054 synaptotagmin III [Homo sapiens]                           30   0.62 
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H...    30   0.81 
gi|122937319 even-skipped homeobox 2 [Homo sapiens]                    30   1.1  
gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]    30   1.1  
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi...    30   1.1  
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]        29   1.4  
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]        29   1.4  
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]         29   1.4  

>gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
           sapiens]
          Length = 153

 Score =  320 bits (820), Expect = 3e-88
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
           MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60

Query: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
           EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120

Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
           QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153


>gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo
           sapiens]
          Length = 153

 Score =  320 bits (820), Expect = 3e-88
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
           MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60

Query: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
           EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120

Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
           QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153


>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
          Length = 195

 Score =  273 bits (699), Expect = 3e-74
 Identities = 134/149 (89%), Positives = 135/149 (90%)

Query: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
           MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1   MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60

Query: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
           EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61  EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120

Query: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRG 149
           QQQDQAE +     GG   R A G   RG
Sbjct: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRG 149


>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
           P A HH  RP       A  RRHH QQQ +  E     +      PG R GR GA G G 
Sbjct: 9   PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68

Query: 148 RG 149
           +G
Sbjct: 69  QG 70


>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
           P A HH  RP       A  RRHH QQQ +  E     +      PG R GR GA G G 
Sbjct: 9   PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68

Query: 148 RG 149
           +G
Sbjct: 69  QG 70


>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
           sapiens]
          Length = 195

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 101 PAAAHHPTRPA------APCRRHHQQQQQDQAEVQSGPE------PGGRHGR-GARGSGG 147
           P A HH  RP       A  RRHH QQQ +  E     +      PG R GR GA G G 
Sbjct: 9   PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68

Query: 148 RG 149
           +G
Sbjct: 69  QG 70


>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 34.7 bits (78), Expect = 0.033
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 76  GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
           G  G    +GA  L G      W+ PAAA  P   PAA       + ++D      G   
Sbjct: 196 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 248

Query: 135 GGRHGRGARGSGGRG 149
           GG HG     SGGRG
Sbjct: 249 GGGHGWHCGRSGGRG 263


>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 34.7 bits (78), Expect = 0.033
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 76  GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
           G  G    +GA  L G      W+ PAAA  P   PAA       + ++D      G   
Sbjct: 179 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 231

Query: 135 GGRHGRGARGSGGRG 149
           GG HG     SGGRG
Sbjct: 232 GGGHGWHCGRSGGRG 246


>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 470

 Score = 34.7 bits (78), Expect = 0.033
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 76  GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEVQSGPEP 134
           G  G    +GA  L G      W+ PAAA  P   PAA       + ++D      G   
Sbjct: 371 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA-------EGEEDHEGDADGAHT 423

Query: 135 GGRHGRGARGSGGRG 149
           GG HG     SGGRG
Sbjct: 424 GGGHGWHCGRSGGRG 438


>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
          Length = 457

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 43  SGCVLRNDVWIVIGGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPA 102
           +GC LR         +L     A  + A  A +G +   G   ++  +GE    A  +PA
Sbjct: 245 NGCYLRRQKRFKCEKQL-----ALKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPA 299

Query: 103 AAHHPTRPAAPCRRHHQ----QQQQDQAEVQSGPEPGGRHGR 140
               P   A+PC+ H +    + +   A   S PEP    G+
Sbjct: 300 GTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQ 341


>gi|194394143 forkhead box A2 isoform 1 [Homo sapiens]
          Length = 463

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 43  SGCVLRNDVWIVIGGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPA 102
           +GC LR         +L     A  + A  A +G +   G   ++  +GE    A  +PA
Sbjct: 251 NGCYLRRQKRFKCEKQL-----ALKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPA 305

Query: 103 AAHHPTRPAAPCRRHHQ----QQQQDQAEVQSGPEPGGRHGR 140
               P   A+PC+ H +    + +   A   S PEP    G+
Sbjct: 306 GTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQ 347


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 31.2 bits (69), Expect = 0.36
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 17/95 (17%)

Query: 28  HIGQNTELCPQTATVSGCVLRNDVWIVIGGELLEALGAASDLAFIASAG------AQGLL 81
           H G N    P    V       D W+ +        G    LA   + G      AQ +L
Sbjct: 208 HGGGNRPSAPSRVAVE------DPWLEVSSSGRGGPGRGQGLAGSQARGTRDPEAAQAML 261

Query: 82  GHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRR 116
            H+GA+L      +  WR+      P R  A CRR
Sbjct: 262 HHLGAQLQAPGNFQAGWRA-----QPRRTGARCRR 291


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 31.2 bits (69), Expect = 0.36
 Identities = 35/143 (24%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 18  PTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELLEALGAASDLAFIASAGA 77
           P    P   G  G+  E C   ++V G              L+ + GA+ D+      G 
Sbjct: 538 PARGDPGIQGIKGEKGEPCLSCSSVVGAQ-----------HLVSSTGASGDVGS-PGFGL 585

Query: 78  QGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAA----------PCRRHHQQQQQDQAE 127
            GL G  G   L GE+  F    PA +  P  P            PC            +
Sbjct: 586 PGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGD 645

Query: 128 VQSGPEPGGRHGRGARGSGGRGL 150
           V+    PG    +G  G  G GL
Sbjct: 646 VRVVALPGPSGEKGEPGPPGFGL 668


>gi|6912444 potassium voltage-gated channel, subfamily G, member 2
           [Homo sapiens]
          Length = 466

 Score = 31.2 bits (69), Expect = 0.36
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 114 CRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLL 151
           C R  ++++++ AE ++GP   G  G  AR  G RG L
Sbjct: 119 CLRRLRRREEEAAEARAGPTERGAQGSPARALGPRGRL 156


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 30.8 bits (68), Expect = 0.47
 Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 30/73 (41%)

Query: 107 PTRPAAPCRRHHQ-----------------------QQQQDQAEVQSGPEPG-------G 136
           P RPA PCRR  Q                       + Q    + + GP PG       G
Sbjct: 224 PGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGG 283

Query: 137 RHGRGARGSGGRG 149
           +  RG RG  GRG
Sbjct: 284 QSSRGGRGGRGRG 296


>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
          Length = 451

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
           AA  P  PA        ++ +D+AE +    P    G G  G GG  +  G
Sbjct: 2   AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52


>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
          Length = 471

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEVQSGPEPGGRHGRGARGSGGRGLLVG 153
           AA  P  PA        ++ +D+AE +    P    G G  G GG  +  G
Sbjct: 2   AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52


>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
          Length = 602

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 91  GERHEFAWRSPAAAHHPTRPAAPC-RRHHQQQQQDQAEVQSGPEPGGRHGRGARGS 145
           G   + A + P A   P  P AP  ++H QQ  Q+QA  + G   GG  G G + S
Sbjct: 27  GGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGG--GGGGKSS 80


>gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo
           sapiens]
          Length = 124

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 118 HQQQQQDQAEVQSGPEP-GGRHGRGARGSGGRG 149
           H  Q  D   V  G  P  GR  RGARG+GG G
Sbjct: 11  HFAQSNDSLMVARGENPRSGRRERGARGAGGAG 43


>gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo
           sapiens]
          Length = 132

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 118 HQQQQQDQAEVQSGPEP-GGRHGRGARGSGGRG 149
           H  Q  D   V  G  P  GR  RGARG+GG G
Sbjct: 11  HFAQSNDSLMVARGENPRSGRRERGARGAGGAG 43


>gi|238550198 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 56  GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
           GG L + LG    LA +   G   L   +G   L+G  H  A     AAHHP
Sbjct: 93  GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140


>gi|238550196 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 56  GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
           GG L + LG    LA +   G   L   +G   L+G  H  A     AAHHP
Sbjct: 93  GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140


>gi|14150054 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 56  GGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHP 107
           GG L + LG    LA +   G   L   +G   L+G  H  A     AAHHP
Sbjct: 93  GGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHA----HAAHHP 140


>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
           sapiens]
          Length = 541

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 79  GLLGHIGAELLVGER--HEFAWRSPAAAHH----PTRPAAPCRRHHQQQQQDQAEVQSGP 132
           GLLG  G+ +++ +R     A RS AA          PA P     +  Q     ++SG 
Sbjct: 24  GLLGEAGSPVVLAQRALETPALRSAAAVRRVGESEQAPAGPQSDRGRPGQVPDRCLRSGR 83

Query: 133 EPGGRHGRGARGSGGRG 149
           E G R G G    GG G
Sbjct: 84  ERGSRSGPGPAERGGGG 100


>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
          Length = 476

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 73  ASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCR--RHHQQQQQDQAEVQS 130
           A A A GL     A          A  + AA   P+  +APC     H  Q    A   +
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAA 405

Query: 131 GPEPGGRHGRGARGSGGRG 149
               G R G G  G GG G
Sbjct: 406 AAALGSRGGGGGGGGGGGG 424


>gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]
          Length = 719

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 18  PTSPSPRHYGHIGQNTELCPQTATVSGC 45
           P S +P+HYG      E CP   TVS C
Sbjct: 298 PESKAPKHYGDTTLLREPCPPERTVSPC 325


>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
           sapiens]
          Length = 1435

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 18  PTSPSPRHYGHIGQNTELCPQTATVSGC 45
           P S +P+HYG      E CP   TVS C
Sbjct: 298 PESKAPKHYGDTTLLREPCPPERTVSPC 325


>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
          Length = 1179

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 63  LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
           L AA  L  + +AGA+ L G          GA  +  VG+        PA    P  P +
Sbjct: 13  LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69

Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
              +  QQQQQ Q + Q  P+P     G    RG  G+GG
Sbjct: 70  SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108


>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
          Length = 1192

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 63  LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
           L AA  L  + +AGA+ L G          GA  +  VG+        PA    P  P +
Sbjct: 13  LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69

Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
              +  QQQQQ Q + Q  P+P     G    RG  G+GG
Sbjct: 70  SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108


>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
          Length = 1203

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 63  LGAASDLAFIASAGAQGLLGH--------IGAELL--VGERHEFAWRSPAAAHHPTRPAA 112
           L AA  L  + +AGA+ L G          GA  +  VG+        PA    P  P +
Sbjct: 13  LSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQA---GGGGPAGQQLPQLPQS 69

Query: 113 PCRRHHQQQQQDQAEVQSGPEP-----GGRHGRGARGSGG 147
              +  QQQQQ Q + Q  P+P     G    RG  G+GG
Sbjct: 70  SQLQQQQQQQQQQQQPQP-PQPPFPAGGPPARRGGAGAGG 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,424,388
Number of Sequences: 37866
Number of extensions: 371939
Number of successful extensions: 2551
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2371
Number of HSP's gapped (non-prelim): 234
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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