Guide to the Human Genome
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Search of human proteins with 239747949

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
sapiens]
         (331 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]           689   0.0  
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ...   689   0.0  
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ...   689   0.0  
gi|153070260 myristoylated alanine-rich protein kinase C substra...    47   2e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens]                43   4e-04
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                41   0.001
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    39   0.005
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    39   0.005
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    39   0.005
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    39   0.005
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ...    39   0.005
gi|239508698 PREDICTED: similar to mucin [Homo sapiens]                39   0.006
gi|5032223 plexin C1 [Homo sapiens]                                    38   0.011
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s...    38   0.011
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s...    38   0.011
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      38   0.014
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ...    38   0.014
gi|23821044 zinc finger/RING finger 2 [Homo sapiens]                   37   0.019
gi|228008351 coiled-coil domain containing 48 [Homo sapiens]           37   0.032
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            37   0.032
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            37   0.032
gi|4758156 diacylglycerol kinase, iota [Homo sapiens]                  37   0.032
gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]          36   0.054
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]          36   0.054
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]          36   0.054
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]            36   0.054
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]            36   0.054
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]            36   0.054
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ...    36   0.054
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ...    36   0.054

>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score =  689 bits (1777), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
           MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60

Query: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
           FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120

Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
           RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180

Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
           GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240

Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
           SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300

Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
           PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331


>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
           sapiens]
          Length = 331

 Score =  689 bits (1777), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
           MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60

Query: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
           FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120

Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
           RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180

Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
           GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240

Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
           SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300

Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
           PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331


>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
           sapiens]
          Length = 331

 Score =  689 bits (1777), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
           MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1   MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60

Query: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
           FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61  FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120

Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
           RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180

Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
           GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240

Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
           SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300

Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
           PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331


>gi|153070260 myristoylated alanine-rich protein kinase C substrate
           [Homo sapiens]
          Length = 332

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 73/264 (27%), Positives = 96/264 (36%), Gaps = 53/264 (20%)

Query: 73  GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQ 132
           G+ +P A    +G P AA A   G SP   E P  G  A    G      G     +S  
Sbjct: 78  GAASPSAA--EKGEPAAAAAPEAGASPVEKEAPAEGEAA--EPGSPTAAEGEAASAASST 133

Query: 133 GS-----GAAFSPAPGSAKWQHVE---------DGASFDGRPRALGSRARPLGATHELRV 178
            S     GA  SP+  + K +             G SF    +  G      G   E   
Sbjct: 134 SSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE-----GGEAEAPA 188

Query: 179 AEGCLDTSSG----AGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG--AAAGTDPQRS 232
           AEG  D ++G    A +EAGA   E    P             +AAAG   AAG DPQ +
Sbjct: 189 AEGGKDEAAGGAAAAAAEAGAASGEQAAAP-----------GEEAAAGEEGAAGGDPQEA 237

Query: 233 MKAEASEASQR---SMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGP- 288
              EA+ A ++   S + +A+E          P  +    +       AA +  S AGP 
Sbjct: 238 KPQEAAVAPEKPPASDETKAAE---------EPSKVEEKKAEEAGASAAACEAPSAAGPG 288

Query: 289 ALGQQVLGRGTEPACRGPRSLAAA 312
           A  +Q      EPA     S  AA
Sbjct: 289 APPEQEAAPAEEPAAAAASSACAA 312


>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
          Length = 417

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
           Q RP GG    + Q  G+ +SP+      Q  E+ A+    P + G R           +
Sbjct: 270 QRRPAGG----TGQRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQ 325

Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTD 228
           P G T + R   GC  +++  G++     A     P   GHR    +  Q     AAGT 
Sbjct: 326 PAGGTGQRR-GSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTG 384

Query: 229 PQRSMKAEASEASQRSMKVRASEAFRW 255
            +R   +  S   QR+   R  E  +W
Sbjct: 385 QRRGSGSSPSADQQRAQD-REEEVRKW 410



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 80  RPDSRGVPEAACAQARGGSPKLPEQP-CRGRGACWRLGGRQLRPGGGKVQSSCQGSGAAF 138
           R +      A  ++      + P+QP CR  G   +  G +  P   + ++  +   AA 
Sbjct: 191 REEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSPSADQQRAQDREEEAAA 250

Query: 139 SPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGA 198
           +PAP S        G   + R      R RP G T + R   G   ++   G++     A
Sbjct: 251 APAPTSR-------GHRTEKRKPQQPQR-RPAGGTGQRR-GSGYSPSADQQGAQDREEEA 301

Query: 199 ELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCP 258
                P   GHR    +  Q     A GT  QR     +S A+Q+  + R  EA   P P
Sbjct: 302 AAAPAPTSSGHRTEKRKRLQLQCQPAGGTG-QRRGSGCSSSANQQGAQDREEEAAAAPVP 360

Query: 259 WS 260
            S
Sbjct: 361 TS 362



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 16/153 (10%)

Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
           Q +P GG    + Q  G+  SP+    + Q  E+ A+    P + G R           R
Sbjct: 111 QCQPAGG----TGQRRGSRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEKRKRQQPQRR 166

Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTD 228
           P G T + R   G   ++   G++     A     P   GHR    +  Q     A GT 
Sbjct: 167 PAGGTGQRR-GSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTG 225

Query: 229 PQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
            +R  ++  S   QR+   R  EA   P P SR
Sbjct: 226 QRRGSRSSPSADQQRAQD-REEEAAAAPAPTSR 257



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 204 PVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
           P   GHR    +  Q     A GT  +R  ++  S   QR+   R  EA   P P SR
Sbjct: 95  PTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSADQQRAQD-REEEAAAAPVPTSR 151


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 75/265 (28%), Positives = 97/265 (36%), Gaps = 53/265 (20%)

Query: 73   GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQ 132
            G      RP+ RG    A +    GSP+ P  P + RG       ++  PG   V +  +
Sbjct: 1743 GEMGSARRPEKRG----AASVKTSGSPRSPAGPEKPRGT------QKTTPG---VPAVLR 1789

Query: 133  GSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSE 192
            G    + P+P           A   G P   G RA P       +VA  CL     A   
Sbjct: 1790 GRTVIYVPSPAPR--------AQPKGTP---GPRATPR------KVAPPCL-----AQPA 1827

Query: 193  AGAGGAELGCQPVGLGHRPHAPRNYQAAAGAA-AGTDPQRSMKAEASEASQRSMKVRASE 251
            A A     G Q     HRP         +    + T P R  K  +S +SQ S    AS+
Sbjct: 1828 APAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSP---ASQ 1884

Query: 252  AFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGT--------EPAC 303
                P P  RPP   T  + AL   GA+    +PA   L +Q   + +         PA 
Sbjct: 1885 ----PLPRKRPPV--TQAAGALPGPGASPVPKTPARTLLAKQHKTQRSPVRIPFMQRPAR 1938

Query: 304  RGPRSLAAAFPAKGSALGPGRAARP 328
            RGP  LA A P  G     G  A P
Sbjct: 1939 RGPPPLARAVPEPGPRGRAGTEAGP 1963


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 65/225 (28%), Positives = 84/225 (37%), Gaps = 43/225 (19%)

Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
           Q +P GG  Q   +GSG+  SP+      Q  E+ A+    P + G R           R
Sbjct: 40  QCQPAGGTGQR--RGSGS--SPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR 95

Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAE----LGCQPVGLGHRPHAPRNYQAAAGAA 224
           P G T + R +      SS +  + GA   E        P   GHR    +  Q     A
Sbjct: 96  PAGGTGQRRGSR-----SSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPA 150

Query: 225 AGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLS 284
           AGT  +R      S   QR+   R  EA   P P S   G RT     L      LQ   
Sbjct: 151 AGTGQRRGSGCSPSADQQRAQD-REEEATAAPVPTS--SGHRTEKRKRL-----QLQ-CQ 201

Query: 285 PAGPALGQQVLGRGTEPACRGPRSLAAAFPAKGSALGPGRAARPA 329
           PAG   GQ+          RG RS  +  PA G+    G  + P+
Sbjct: 202 PAG-GTGQR----------RGSRSSPSRQPAGGTGQRRGSRSSPS 235


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
           [Homo sapiens]
          Length = 1451

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)

Query: 82  DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
           D  G P    AQ +  S    E P R           +  P  GKV   + Q  G A  P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259

Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
           A   AK    E  +S +G          P G   +++ +E  L   + +    G  G   
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313

Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
                  G  P  P    A A       P+   ++ + E+S    +  A++A        
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366

Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
           +    G  +  +    R GAA       GPA+ +   G+  E                  
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426

Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
             P+ + P+  AA+ PAK     G+A  P R   PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)

Query: 90   ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
            A AQA+  SP   + P R  + +     G    P  GK  ++   +        GS+   
Sbjct: 815  AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871

Query: 149  HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
              E+ +  +     L ++ +P G TH++R A      S   G+      + G   A+ G 
Sbjct: 872  --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928

Query: 203  QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
            Q             G  P A  + Q         DP RS                  KA 
Sbjct: 929  QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988

Query: 237  ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
            ASE++ RS    + +    P      PG+RT
Sbjct: 989  ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
           [Homo sapiens]
          Length = 1488

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)

Query: 82  DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
           D  G P    AQ +  S    E P R           +  P  GKV   + Q  G A  P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259

Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
           A   AK    E  +S +G          P G   +++ +E  L   + +    G  G   
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313

Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
                  G  P  P    A A       P+   ++ + E+S    +  A++A        
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366

Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
           +    G  +  +    R GAA       GPA+ +   G+  E                  
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426

Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
             P+ + P+  AA+ PAK     G+A  P R   PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)

Query: 90   ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
            A AQA+  SP   + P R  + +     G    P  GK  ++   +        GS+   
Sbjct: 815  AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871

Query: 149  HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
              E+ +  +     L ++ +P G TH++R A      S   G+      + G   A+ G 
Sbjct: 872  --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928

Query: 203  QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
            Q             G  P A  + Q         DP RS                  KA 
Sbjct: 929  QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988

Query: 237  ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
            ASE++ RS    + +    P      PG+RT
Sbjct: 989  ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
           [Homo sapiens]
          Length = 1450

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)

Query: 82  DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
           D  G P    AQ +  S    E P R           +  P  GKV   + Q  G A  P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259

Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
           A   AK    E  +S +G          P G   +++ +E  L   + +    G  G   
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313

Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
                  G  P  P    A A       P+   ++ + E+S    +  A++A        
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366

Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
           +    G  +  +    R GAA       GPA+ +   G+  E                  
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426

Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
             P+ + P+  AA+ PAK     G+A  P R   PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)

Query: 90   ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
            A AQA+  SP   + P R  + +     G    P  GK  ++   +        GS+   
Sbjct: 815  AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871

Query: 149  HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
              E+ +  +     L ++ +P G TH++R A      S   G+      + G   A+ G 
Sbjct: 872  --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928

Query: 203  QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
            Q             G  P A  + Q         DP RS                  KA 
Sbjct: 929  QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988

Query: 237  ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
            ASE++ RS    + +    P      PG+RT
Sbjct: 989  ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019


>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
           [Homo sapiens]
          Length = 958

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)

Query: 82  DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
           D  G P    AQ +  S    E P R           +  P  GKV   + Q  G A  P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259

Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
           A   AK    E  +S +G          P G   +++ +E  L   + +    G  G   
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313

Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
                  G  P  P    A A       P+   ++ + E+S    +  A++A        
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366

Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
           +    G  +  +    R GAA       GPA+ +   G+  E                  
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426

Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
             P+ + P+  AA+ PAK     G+A  P R   PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462


>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
          Length = 265

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
           Q RP GG  Q   +GSG+  SP+      Q  E+ A+    P + G R           R
Sbjct: 111 QCRPAGGTGQR--RGSGS--SPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR 166

Query: 169 PLGATHELRVAEGC--LDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAG 226
           P   T + R +      D       E  A  A +   P   GHR    +  Q     AAG
Sbjct: 167 PAAGTGQRRGSRSSPSADQQGAQDREEEAAAAPV---PTSRGHRTEKRKRQQPQCRPAAG 223

Query: 227 TDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
           T  +R  ++  S   QR+   R  EA   P P S
Sbjct: 224 TGQRRGSRSSPSADQQRAQD-REEEAAAAPAPTS 256



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 204 PVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
           P   GHR    +  Q     A GT  QR     +  A Q+  + R  EA   P P SR
Sbjct: 95  PTSSGHRTEKRKPQQPQCRPAGGTG-QRRGSGSSPSADQQGAQDREEEAAAAPAPTSR 151


>gi|5032223 plexin C1 [Homo sapiens]
          Length = 1568

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 68/258 (26%), Positives = 90/258 (34%), Gaps = 40/258 (15%)

Query: 70  TLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRG----RGAC-----WRLGGRQL 120
           T P S AP ARP             R G+  L      G    RGAC       L    L
Sbjct: 88  TEPVSLAPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRNSL 147

Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
           R G   V    QGS A      G     ++   A++        SR  P  + H+  +A 
Sbjct: 148 RNGTEVVSCHPQGSTAGVVYRAGRNNRWYLAVAATYVLPEPETASRCNPAASDHDTAIA- 206

Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHR------------PHAPRNYQAAAGAAAGTD 228
              DT   + +    G  +L C+  G  H             P+ P NY   +GAA G  
Sbjct: 207 -LKDTEGRSLATQELGRLKL-CEGAGSLHFVDAFLWNGSIYFPYYPYNY--TSGAATGW- 261

Query: 229 PQRSMKAEASEA---SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSP 285
           P  +  A+++E     Q S+           C    P G R LLSS+LV       G+  
Sbjct: 262 PSMARIAQSTEVLFQGQASLD----------CGHGHPDGRRLLLSSSLVEALDVWAGVFS 311

Query: 286 AGPALGQQVLGRGTEPAC 303
           A    GQ+     T   C
Sbjct: 312 AAAGEGQERRSPTTTALC 329


>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
           sapiens]
          Length = 920

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 10/196 (5%)

Query: 124 GGKVQSSCQGS--GAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEG 181
           G   QS   G+  G A SP+ GS+    V  G+S    P+ LG +A   G  ++  V +G
Sbjct: 49  GNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQG 107

Query: 182 CLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPR---NYQAAAGAAAGTDPQRSMKAEAS 238
                   G+     G   G  P GLG   HA R   ++  AA AAA      +  A A+
Sbjct: 108 VYSRGGYPGAPGFTTGYAGG--PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT 165

Query: 239 EASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRG 298
                  + ++ E  ++    +        L     RG +   G++P G  +G  +   G
Sbjct: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG--IGGVMGPSG 223

Query: 299 TEPACRGPRSLAAAFP 314
             P    P   A   P
Sbjct: 224 LSPLAMNPTRAAGMTP 239


>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
           sapiens]
          Length = 894

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 10/196 (5%)

Query: 124 GGKVQSSCQGS--GAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEG 181
           G   QS   G+  G A SP+ GS+    V  G+S    P+ LG +A   G  ++  V +G
Sbjct: 49  GNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQG 107

Query: 182 CLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPR---NYQAAAGAAAGTDPQRSMKAEAS 238
                   G+     G   G  P GLG   HA R   ++  AA AAA      +  A A+
Sbjct: 108 VYSRGGYPGAPGFTTGYAGG--PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT 165

Query: 239 EASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRG 298
                  + ++ E  ++    +        L     RG +   G++P G  +G  +   G
Sbjct: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG--IGGVMGPSG 223

Query: 299 TEPACRGPRSLAAAFP 314
             P    P   A   P
Sbjct: 224 LSPLAMNPTRAAGMTP 239


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 74/271 (27%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 73  GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGR-GACWRLGGRQLR--PGGGKVQS 129
           G   P   P  +G+P  A      G P   EQ   G  GA    G R  R  PG   VQ 
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPG--EQGVPGDLGAPGPSGARGERGFPGERGVQG 689

Query: 130 SCQGSGA-AFSPAPGSAKWQHVEDGASFD-GRPRALGSRARP-LGATHELRVAEGCLDTS 186
               +G    + APG+       DGA  D G P A GS+  P L      R A G L   
Sbjct: 690 PPGPAGPRGANGAPGN-------DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG-LPGP 741

Query: 187 SGAGSEAGAGGAELG---------CQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEA 237
            G   +AG  GA+             P+G    P  P       G +  + P     A  
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVRGLTGPIG----PPGPAGAPGDKGESGPSGPAGPTGARG 797

Query: 238 SEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
           +   +          F  P      PG +     A  +G A   G  PAGPA     +G 
Sbjct: 798 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG--PAGPAGPPGPIGN 855

Query: 298 GTEPACRGPRSLAAAFPAKGSALGPGRAARP 328
              P  +G R  A    A G     GR   P
Sbjct: 856 VGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886



 Score = 35.8 bits (81), Expect = 0.054
 Identities = 72/271 (26%), Positives = 87/271 (32%), Gaps = 41/271 (15%)

Query: 69  NTLPGSCAPMARPDSRGVPEA-ACAQARG-------GSPKLPEQPCRGRGACWRLGGR-Q 119
           N  PG   P   P  RG P A   A ARG         P  P  P    G    +G + +
Sbjct: 295 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 354

Query: 120 LRPGGGKVQSSCQG-SGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRV 178
             P G +     QG  G    P P  A       GA  DG+P A G+   P      +  
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGA--DGQPGAKGANGAP-----GIAG 407

Query: 179 AEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNY-QAAAGAAAGTDPQRSMKAEA 237
           A G    + G     G GG      P G    P AP +     A    G    +     A
Sbjct: 408 APG-FPGARGPSGPQGPGGPP---GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463

Query: 238 SEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
            E  +R  +         P     PPG R    S    G   + G  P GPA      G 
Sbjct: 464 GEEGKRGARGEPG-----PTGLPGPPGERGGPGSRGFPGADGVAG--PKGPA------GE 510

Query: 298 GTEPACRGPRSLAAAFPAKGSALGPGRAARP 328
              P   GP+       + G A  PG A  P
Sbjct: 511 RGSPGPAGPKG------SPGEAGRPGEAGLP 535



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 74/264 (28%), Positives = 85/264 (32%), Gaps = 41/264 (15%)

Query: 73  GSCAPMARPDSRGVPEAACAQARGGSPKLPEQP-CRGRGACWRLGGRQLRPGGGKVQSSC 131
           GS  P       G P  A A    G+P    QP  +G      + G    PG  +  S  
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA-RGPSGP 420

Query: 132 QGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS 191
           QG G    P   S             G P A GS+    GA  E       +    G   
Sbjct: 421 QGPGGPPGPKGNS-------------GEPGAPGSKG-DTGAKGEPGPVG--VQGPPGPAG 464

Query: 192 EAGAGGAELGCQPVGLGHRPH-----APRNYQAAAGAAAGTDP--QRSMKAEASEASQRS 244
           E G  GA     P GL   P        R +  A G A    P  +R     A       
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 524

Query: 245 MKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACR 304
              R  EA          PG + L  S    G     G  P GPA GQ   GR   P   
Sbjct: 525 EAGRPGEAGL--------PGAKGLTGSPGSPGPDGKTG--PPGPA-GQD--GRPGPPGPP 571

Query: 305 GPRSLAAA--FPA-KGSALGPGRA 325
           G R  A    FP  KG+A  PG+A
Sbjct: 572 GARGQAGVMGFPGPKGAAGEPGKA 595


>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
           sapiens]
          Length = 316

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 71/251 (28%), Positives = 86/251 (34%), Gaps = 57/251 (22%)

Query: 85  GVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPG-GGKVQSSCQGSGAAFSPAPG 143
           G P         GSP   +Q  R   +C R       PG GGK Q    G+G   SP P 
Sbjct: 56  GAPGTQRGVREVGSPTR-DQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPC 114

Query: 144 SAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGG----AE 199
           +               P+AL S   P  A    R+  G    SSGA      GG    A 
Sbjct: 115 A---------------PQALASLLGPGKAGCRARLQGG----SSGASPRRLPGGRGPAAA 155

Query: 200 LGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPW 259
              +P G G R   PRN   A  + +GT P          AS + ++V          P+
Sbjct: 156 FAVEP-GTGQR---PRNTSLAQASRSGTVP------GLPPASLQPLRV----------PY 195

Query: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAKGSA 319
             PPG     S    RG   L    P    L   +      P CR    LA   P   + 
Sbjct: 196 FAPPGPHDPTS----RGPGRLLTREPPSRKLPPPL------PLCRSRWVLAP--PPPPAP 243

Query: 320 LGPGRAARPAL 330
            GP  AA P L
Sbjct: 244 PGPNAAAHPPL 254


>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
          Length = 242

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 153 GASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPH 212
           GA   G P A   R R    +     + G  + ++G G  A A  A      V   H+P 
Sbjct: 2   GAKQSG-PAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60

Query: 213 APRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSA 272
           A     AAA A A     RS     +  S  S    A   F  P   S P G +  + S+
Sbjct: 61  ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120

Query: 273 LVRGGAALQ---GLSPAGPAL 290
              GG       G SP GP L
Sbjct: 121 PEDGGGGRDRPVGGSPGGPRL 141


>gi|228008351 coiled-coil domain containing 48 [Homo sapiens]
          Length = 598

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 10/172 (5%)

Query: 84  RGVPEAACAQARGGSPKLPEQ----PCRGRGACWRLGGRQL------RPGGGKVQSSCQG 133
           RGV       A G    L E      CRG G   R   R L      R  G        G
Sbjct: 42  RGVENEIVVLATGLDQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLRAEGATTAGQAAG 101

Query: 134 SGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEA 193
            G +    PG A  +   DG S       L  RA P   T     A  C    + AG   
Sbjct: 102 DGNSRDVTPGDAAAELATDGDSDTDEEARLALRAEPPELTFRQFHARLCGYFGTRAGPRL 161

Query: 194 GAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSM 245
             G      +      RP   R    A G  +G D +R  + E   +S R +
Sbjct: 162 PRGALSEHIETQIRLRRPRRRRRPPCAPGPDSGPDCERVARLEEENSSLREL 213


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 65/266 (24%), Positives = 90/266 (33%), Gaps = 55/266 (20%)

Query: 97  GSPKLPEQPCRGRGACWRLGGRQ----------LRPGGGKVQSSCQGSGAAF----SPAP 142
           GS   P     G G   R G R+          LR G  +    CQG G+++    +P P
Sbjct: 158 GSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSR---RCQGLGSSWGGSGTPPP 214

Query: 143 GSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGC 202
             A W      A    + R    RA P        V  GC+ T +      G GG +   
Sbjct: 215 PRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-----RGHGGVQ--- 266

Query: 203 QPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWP-----C 257
                  R  AP ++  + G   G    R    + S+A++ S    A  A   P      
Sbjct: 267 -----RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAA 321

Query: 258 PWSRPPGLR--TLLSSAL-----------VRGGAALQGLSPAGPALGQQVLGRG-TEPAC 303
            W    G R  T+L  A+            R G AL+      PA G ++  R       
Sbjct: 322 QWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE------PAQGSELWARAERHGGS 375

Query: 304 RGPRSLAAAFPAKGSALGPGRAARPA 329
            G R+L     A+     P  +A PA
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPA 401


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 65/266 (24%), Positives = 90/266 (33%), Gaps = 55/266 (20%)

Query: 97  GSPKLPEQPCRGRGACWRLGGRQ----------LRPGGGKVQSSCQGSGAAF----SPAP 142
           GS   P     G G   R G R+          LR G  +    CQG G+++    +P P
Sbjct: 158 GSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSR---RCQGLGSSWGGSGTPPP 214

Query: 143 GSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGC 202
             A W      A    + R    RA P        V  GC+ T +      G GG +   
Sbjct: 215 PRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-----RGHGGVQ--- 266

Query: 203 QPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWP-----C 257
                  R  AP ++  + G   G    R    + S+A++ S    A  A   P      
Sbjct: 267 -----RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAA 321

Query: 258 PWSRPPGLR--TLLSSAL-----------VRGGAALQGLSPAGPALGQQVLGRG-TEPAC 303
            W    G R  T+L  A+            R G AL+      PA G ++  R       
Sbjct: 322 QWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE------PAQGSELWARAERHGGS 375

Query: 304 RGPRSLAAAFPAKGSALGPGRAARPA 329
            G R+L     A+     P  +A PA
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPA 401


>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
          Length = 1065

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 52/180 (28%), Positives = 70/180 (38%), Gaps = 37/180 (20%)

Query: 125 GKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLD 184
           G  ++    + AA SP PG         GA+      A      P  +  E + A G   
Sbjct: 18  GPARAPAAAAAAAASP-PGPCS------GAACAPSAAAGAGAMNPSSSAGEEKGATGG-S 69

Query: 185 TSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQ---RSMKAEASEAS 241
           +SSG+G+ +   GAE G  P G G          AAAGAAA  +P    +  K EA E  
Sbjct: 70  SSSGSGAGSCCLGAEGGADPRGAGS--------AAAAGAAALDEPAAAGQKEKDEALEEK 121

Query: 242 QRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEP 301
            R++  R   ++R                 A+ R G  LQ L+PA P       G   EP
Sbjct: 122 LRNLTFRKQVSYR----------------KAISRAG--LQHLAPAHPLSLPVANGPAKEP 163


>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
          Length = 354

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 261

Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 262 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 305


>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
          Length = 428

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 335

Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 336 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 379


>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
          Length = 429

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 281 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 336

Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 337 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 380


>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 183 LDTSSGAGSEAGAG-GAELGCQPVGLGHRPH-APRNYQAAAGAAAGTDPQRSMKAEASEA 240
           +  + G G EA AG GA+   Q VG G R H AP   + A GA A   P    +      
Sbjct: 155 IHAARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARAAEHPAVGGRGHGPGG 214

Query: 241 SQRSMKVRASEAFRWP--CPW-SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
                       +RWP    W    PG      +  V GG+A   L+  GP   +   GR
Sbjct: 215 -------HGCGGWRWPGRRRWRGLAPGEEANEGAVGVGGGSAAASLA-RGP---RSESGR 263

Query: 298 GTEPA 302
           G +PA
Sbjct: 264 GLDPA 268


>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 501

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)

Query: 51  FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
           FS+ C  SPL+ C          + +P  +  S GV    PEAA    R     L   P 
Sbjct: 266 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 320

Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
           R         GR+LR            + A   P  G+        G+SF GRP     A
Sbjct: 321 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 361

Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
           LGS  R   A H L      L  ++  G EA                  H+    Q  A 
Sbjct: 362 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 397

Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
              G+D  R       ++    +   A+ A R  P     PP  R + ++A   GGA   
Sbjct: 398 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 453

Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
           L+G   A P  G+    RG    C G R L
Sbjct: 454 LEGRGGAAPPAGK----RGLLIGCEGDRRL 479


>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 591

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)

Query: 51  FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
           FS+ C  SPL+ C          + +P  +  S GV    PEAA    R     L   P 
Sbjct: 356 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 410

Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
           R         GR+LR            + A   P  G+        G+SF GRP     A
Sbjct: 411 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 451

Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
           LGS  R   A H L      L  ++  G EA                  H+    Q  A 
Sbjct: 452 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 487

Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
              G+D  R       ++    +   A+ A R  P     PP  R + ++A   GGA   
Sbjct: 488 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 543

Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
           L+G   A P  G+    RG    C G R L
Sbjct: 544 LEGRGGAAPPAGK----RGLLIGCEGDRRL 569


>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
           sapiens]
          Length = 446

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 183 LDTSSGAGSEAGAG-GAELGCQPVGLGHRPH-APRNYQAAAGAAAGTDPQRSMKAEASEA 240
           +  + G G EA AG GA+   Q VG G R H AP   + A GA A   P    +      
Sbjct: 304 IHAARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARAAEHPAVGGRGHGPGG 363

Query: 241 SQRSMKVRASEAFRWP--CPW-SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
                       +RWP    W    PG      +  V GG+A   L+  GP   +   GR
Sbjct: 364 -------HGCGGWRWPGRRRWRGLAPGEEANEGAVGVGGGSAAASLA-RGP---RSESGR 412

Query: 298 GTEPA 302
           G +PA
Sbjct: 413 GLDPA 417


>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
           sapiens]
          Length = 591

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)

Query: 51  FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
           FS+ C  SPL+ C          + +P  +  S GV    PEAA    R     L   P 
Sbjct: 356 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 410

Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
           R         GR+LR            + A   P  G+        G+SF GRP     A
Sbjct: 411 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 451

Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
           LGS  R   A H L      L  ++  G EA                  H+    Q  A 
Sbjct: 452 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 487

Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
              G+D  R       ++    +   A+ A R  P     PP  R + ++A   GGA   
Sbjct: 488 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 543

Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
           L+G   A P  G+    RG    C G R L
Sbjct: 544 LEGRGGAAPPAGK----RGLLIGCEGDRRL 569


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,179,833
Number of Sequences: 37866
Number of extensions: 957839
Number of successful extensions: 4485
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4182
Number of HSP's gapped (non-prelim): 543
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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