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Search of human proteins with 239747578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747578 PREDICTED: hypothetical protein XP_002347666 [Homo
sapiens]
(294 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747578 PREDICTED: hypothetical protein XP_002347666 [Homo ... 573 e-164
gi|47458827 peptidase M20 domain containing 1 [Homo sapiens] 311 6e-85
gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo sa... 34 0.13
gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sa... 34 0.13
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa... 34 0.13
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 34 0.13
gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo sa... 34 0.13
gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa... 34 0.13
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa... 34 0.13
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 34 0.13
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 33 0.39
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 33 0.39
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 33 0.39
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 33 0.39
gi|91982772 mucin 17 [Homo sapiens] 32 0.51
gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens] 32 0.87
gi|189491742 ataxin 7 isoform b [Homo sapiens] 31 1.1
gi|4506797 ataxin 7 isoform a [Homo sapiens] 31 1.1
gi|110349719 titin isoform N2-A [Homo sapiens] 31 1.5
gi|110349717 titin isoform novex-2 [Homo sapiens] 31 1.5
gi|110349713 titin isoform novex-1 [Homo sapiens] 31 1.5
gi|110349715 titin isoform N2-B [Homo sapiens] 31 1.5
gi|83367077 mucin 16 [Homo sapiens] 31 1.5
gi|4501901 aminoacylase 1 [Homo sapiens] 31 1.5
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap... 30 1.9
gi|167736355 mucin 4 isoform a [Homo sapiens] 30 1.9
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 30 2.5
gi|31982904 nucleoporin 35kDa [Homo sapiens] 30 3.3
gi|4507689 transient receptor potential cation channel, subfamil... 29 4.3
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 29 4.3
>gi|239747578 PREDICTED: hypothetical protein XP_002347666 [Homo
sapiens]
Length = 294
Score = 573 bits (1476), Expect = e-164
Identities = 294/294 (100%), Positives = 294/294 (100%)
Query: 1 MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ 60
MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ
Sbjct: 1 MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ 60
Query: 61 IPTVTFSSEKSNTTALAEFGKYIHKGLCFSSRLEQTPMPIIFGSGTVVTVLQQLANEFPF 120
IPTVTFSSEKSNTTALAEFGKYIHKGLCFSSRLEQTPMPIIFGSGTVVTVLQQLANEFPF
Sbjct: 61 IPTVTFSSEKSNTTALAEFGKYIHKGLCFSSRLEQTPMPIIFGSGTVVTVLQQLANEFPF 120
Query: 121 PVNIILSNPWLFEPLISRFMERNPLTNAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRI 180
PVNIILSNPWLFEPLISRFMERNPLTNAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRI
Sbjct: 121 PVNIILSNPWLFEPLISRFMERNPLTNAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRI 180
Query: 181 HPGQTVQEVLELTKNIVADNRVQFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVN 240
HPGQTVQEVLELTKNIVADNRVQFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVN
Sbjct: 181 HPGQTVQEVLELTKNIVADNRVQFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVN 240
Query: 241 ITAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQSKPMRPK 294
ITAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQSKPMRPK
Sbjct: 241 ITAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQSKPMRPK 294
>gi|47458827 peptidase M20 domain containing 1 [Homo sapiens]
Length = 502
Score = 311 bits (796), Expect = 6e-85
Identities = 157/158 (99%), Positives = 158/158 (100%)
Query: 91 SRLEQTPMPIIFGSGTVVTVLQQLANEFPFPVNIILSNPWLFEPLISRFMERNPLTNAII 150
SRLEQTPMPIIFGSGTVVTVLQQLANEFPFPVNIILSNPWLFEPLISRFMERNPLTNAII
Sbjct: 275 SRLEQTPMPIIFGSGTVVTVLQQLANEFPFPVNIILSNPWLFEPLISRFMERNPLTNAII 334
Query: 151 RTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNRVQFHVLSAF 210
RTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNRVQFHVLSAF
Sbjct: 335 RTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNRVQFHVLSAF 394
Query: 211 DPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSM 248
DPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTS+
Sbjct: 395 DPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSI 432
Score = 167 bits (422), Expect = 1e-41
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ 60
MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ
Sbjct: 1 MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQ 60
Query: 61 IPTVTFSSEKSNTTALAEFGKYIHK 85
IPTVTFSSEKSNTTALAEFGKYIHK
Sbjct: 61 IPTVTFSSEKSNTTALAEFGKYIHK 85
>gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo
sapiens]
Length = 1268
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 604 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 663
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 664 PGSQAGSSERTRVRANSKSEGSPVLP 689
>gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo
sapiens]
Length = 1276
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 604 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 663
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 664 PGSQAGSSERTRVRANSKSEGSPVLP 689
>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
sapiens]
Length = 1297
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 633 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 692
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 693 PGSQAGSSERTRVRANSKSEGSPVLP 718
>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
sapiens]
Length = 1305
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 633 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 692
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 693 PGSQAGSSERTRVRANSKSEGSPVLP 718
>gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo
sapiens]
Length = 1323
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 659 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 718
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 719 PGSQAGSSERTRVRANSKSEGSPVLP 744
>gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo
sapiens]
Length = 1331
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 659 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 718
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 719 PGSQAGSSERTRVRANSKSEGSPVLP 744
>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
sapiens]
Length = 1352
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 688 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 747
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 748 PGSQAGSSERTRVRANSKSEGSPVLP 773
>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
sapiens]
Length = 1360
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPEVNITAPV-------TSMATQTADSLQTS-PLASTGST 267
SP + ALG +L Q +++ P++ T P+ TS + ++ S +S P + GS
Sbjct: 688 SPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQ 747
Query: 268 PSTYSLKTSNASMESTRKSQSKPMRP 293
P + + + + + KS+ P+ P
Sbjct: 748 PGSQAGSSERTRVRANSKSEGSPVLP 773
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 190 LELTKNIV-ADNRV-QFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTS 247
LEL+K +V D R+ +F + + + SD K G L +++ P ++APV S
Sbjct: 748 LELSKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELIESIPKPEPVTEVSAPVKS 807
Query: 248 MATQTADSLQTSPLA 262
QT+ SL TS ++
Sbjct: 808 FQIQTSTSLGTSQIS 822
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 190 LELTKNIV-ADNRV-QFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTS 247
LEL+K +V D R+ +F + + + SD K G L +++ P ++APV S
Sbjct: 748 LELSKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELIESIPKPEPVTEVSAPVKS 807
Query: 248 MATQTADSLQTSPLA 262
QT+ SL TS ++
Sbjct: 808 FQIQTSTSLGTSQIS 822
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 190 LELTKNIV-ADNRV-QFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTS 247
LEL+K +V D R+ +F + + + SD K G L +++ P ++APV S
Sbjct: 748 LELSKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELIESIPKPEPVTEVSAPVKS 807
Query: 248 MATQTADSLQTSPLA 262
QT+ SL TS ++
Sbjct: 808 FQIQTSTSLGTSQIS 822
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 190 LELTKNIV-ADNRV-QFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTS 247
LEL+K +V D R+ +F + + + SD K G L +++ P ++APV S
Sbjct: 748 LELSKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELIESIPKPEPVTEVSAPVKS 807
Query: 248 MATQTADSLQTSPLA 262
QT+ SL TS ++
Sbjct: 808 FQIQTSTSLGTSQIS 822
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 32.3 bits (72), Expect = 0.51
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 205 HVLSAFDPLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSMATQTADSLQTSPLAST 264
H ++ PV+PS + + + T+ FP + + P T+ A+ T + + +T
Sbjct: 4035 HTSTSVTTRPVTPSSESSRPSTITSHTIPPTFPPAHSSTPPTTSASSTTVNPEAVTTMTT 4094
Query: 265 GSTPST 270
+ PST
Sbjct: 4095 RTKPST 4100
>gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens]
Length = 1392
Score = 31.6 bits (70), Expect = 0.87
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 164 KFNVIPPVAQATVNFRIHPGQTVQEVLELTKNI--VADNRVQFHVLSAFDPLPVSPSDDK 221
+ N +PP+ V + P T ++ + LTK I A R + + + +PS D+
Sbjct: 91 QINHLPPLGSTIVMTKTPPVTTNRQTITLTKFIQTTASTRPSVSAPTVRNAMTSAPSKDQ 150
Query: 222 ALGYQLLRQT----VQSVFPEVNITAPVTSMATQTAD 254
LL+ + + P NI PV + AT ++
Sbjct: 151 VQLKDLLKNNSLNELMKLKPPANIAQPVATAATDVSN 187
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 244 PVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQ----SKPMRPK 294
P S A S+Q+ ++S+ S+PST S +S S +RK Q SK +RPK
Sbjct: 629 PAASGAMDPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPK 683
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 244 PVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQ----SKPMRPK 294
P S A S+Q+ ++S+ S+PST S +S S +RK Q SK +RPK
Sbjct: 629 PAASGAMDPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPK 683
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.8 bits (68), Expect = 1.5
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 144 PLT--NAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNR 201
PLT +A + T L+ FK G++ ++P V +P T K + +R
Sbjct: 13383 PLTADDAFVEPTMDLSAFKDGLEV-IVPNPITILVPSTGYPRPTATWCFG-DKVLETGDR 13440
Query: 202 VQFHVLSAFDPLPVSPSD--DKALGYQLLRQTVQSVFPEVNITAPVTSMATQ-------T 252
V+ LSA+ L +SPS+ DK + L V+++ E+++ A + T
Sbjct: 13441 VKMKTLSAYAELVISPSERSDKGIYTLKLENRVKTISGEIDVNVIARPSAPKELKFGDIT 13500
Query: 253 ADS--LQTSPLASTGSTPST-YSLKTSNASMESTRKSQSKPM 291
DS L P G +P T Y ++ E +RK+ +K M
Sbjct: 13501 KDSVHLTWEPPDDDGGSPLTGYVVE----KREVSRKTWTKVM 13538
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 30.8 bits (68), Expect = 1.5
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 144 PLT--NAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNR 201
PLT +A + T L+ FK G++ ++P V +P T K + +R
Sbjct: 7078 PLTADDAFVEPTMDLSAFKDGLEV-IVPNPITILVPSTGYPRPTATWCFG-DKVLETGDR 7135
Query: 202 VQFHVLSAFDPLPVSPSD--DKALGYQLLRQTVQSVFPEVNITAPVTSMATQ-------T 252
V+ LSA+ L +SPS+ DK + L V+++ E+++ A + T
Sbjct: 7136 VKMKTLSAYAELVISPSERSDKGIYTLKLENRVKTISGEIDVNVIARPSAPKELKFGDIT 7195
Query: 253 ADS--LQTSPLASTGSTPST-YSLKTSNASMESTRKSQSKPM 291
DS L P G +P T Y ++ E +RK+ +K M
Sbjct: 7196 KDSVHLTWEPPDDDGGSPLTGYVVE----KREVSRKTWTKVM 7233
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 30.8 bits (68), Expect = 1.5
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 144 PLT--NAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNR 201
PLT +A + T L+ FK G++ ++P V +P T K + +R
Sbjct: 7011 PLTADDAFVEPTMDLSAFKDGLEV-IVPNPITILVPSTGYPRPTATWCFG-DKVLETGDR 7068
Query: 202 VQFHVLSAFDPLPVSPSD--DKALGYQLLRQTVQSVFPEVNITAPVTSMATQ-------T 252
V+ LSA+ L +SPS+ DK + L V+++ E+++ A + T
Sbjct: 7069 VKMKTLSAYAELVISPSERSDKGIYTLKLENRVKTISGEIDVNVIARPSAPKELKFGDIT 7128
Query: 253 ADS--LQTSPLASTGSTPST-YSLKTSNASMESTRKSQSKPM 291
DS L P G +P T Y ++ E +RK+ +K M
Sbjct: 7129 KDSVHLTWEPPDDDGGSPLTGYVVE----KREVSRKTWTKVM 7166
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 30.8 bits (68), Expect = 1.5
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 144 PLT--NAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNR 201
PLT +A + T L+ FK G++ ++P V +P T K + +R
Sbjct: 6886 PLTADDAFVEPTMDLSAFKDGLEV-IVPNPITILVPSTGYPRPTATWCFG-DKVLETGDR 6943
Query: 202 VQFHVLSAFDPLPVSPSD--DKALGYQLLRQTVQSVFPEVNITAPVTSMATQ-------T 252
V+ LSA+ L +SPS+ DK + L V+++ E+++ A + T
Sbjct: 6944 VKMKTLSAYAELVISPSERSDKGIYTLKLENRVKTISGEIDVNVIARPSAPKELKFGDIT 7003
Query: 253 ADS--LQTSPLASTGSTPST-YSLKTSNASMESTRKSQSKPM 291
DS L P G +P T Y ++ E +RK+ +K M
Sbjct: 7004 KDSVHLTWEPPDDDGGSPLTGYVVE----KREVSRKTWTKVM 7041
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.8 bits (68), Expect = 1.5
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 176 VNFRIHPGQTVQEVLELTKNIVADNRVQFHVLSAFDPLP-VSPSDDKALGYQLLRQTVQS 234
++ + P V + L+ + RV+ +A PL SPS ++ G L T
Sbjct: 759 ISTKTKPSSAVLSSMTLSNAATSPERVR----NATSPLTHPSPSGEETAGSVLTLSTSAE 814
Query: 235 VFPEVNITAPVTSMATQTADSLQTSPLAS--------TGSTPSTYSLKTSNASMESTRKS 286
NI P ++ +++++S T L S + STPST+ + + E++ S
Sbjct: 815 TTDSPNIH-PTGTLTSESSESPSTLSLPSVSGVKTTFSSSTPSTHLFTSGEETEETSNPS 873
Query: 287 QSKP 290
S+P
Sbjct: 874 VSQP 877
>gi|4501901 aminoacylase 1 [Homo sapiens]
Length = 408
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 140 MERNPLTNAIIRTTTALTIFKAGVKFNVIPPVAQATVNFRIHP 182
++ NP T+ LT + GV +NVIP A+ +FR+ P
Sbjct: 237 LQSNPHLKEGSVTSVNLTKLEGGVAYNVIPATMSASFDFRVAP 279
>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo
sapiens]
Length = 1270
Score = 30.4 bits (67), Expect = 1.9
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 216 SPSDDKALGYQLLRQTVQSVFPE---------VNITAPVT-SMATQTADSLQ----TSPL 261
+PS D+A+ Q +R+ S P VN+ P+ S A+ + +L+ T +
Sbjct: 744 NPSADRAVSPQRIRRVSSSGKPTSLKTAQSSWVNLPRPLPKSKASLKSPALRRTGSTPSI 803
Query: 262 ASTGSTPSTYSLKTSNASMESTRKSQSKPMRP 293
AST S STYS + NA++ K + KP +P
Sbjct: 804 ASTHSELSTYSNNSGNAAV---IKYEEKPPKP 832
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 212 PLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSMATQTADSLQTSPL----ASTGST 267
PLPV+ + G+ + T P+ ++ +A S T+PL AS+ ST
Sbjct: 2336 PLPVTSPSSASTGHATPLHVTDASSVSTGDTTPLPVTSSSSASSGHTTPLPVTDASSAST 2395
Query: 268 PSTYSLKTSNASMESTRKSQSKPM 291
T L ++ S ST + P+
Sbjct: 2396 GDTTPLPVTDTSSASTGHATHLPV 2419
Score = 28.1 bits (61), Expect = 9.6
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 212 PLPVSPSDDKALGYQ--LLRQTVQSVFPEVNITAPVTSMATQTADSLQTSPLAST--GST 267
PLP + + + G+ LL SV PVTS ++ + P+ T ST
Sbjct: 2464 PLPGTDTSSVSTGHTTPLLVTDASSVSTGDTTRLPVTSPSSASTGHTTPLPVTDTPSAST 2523
Query: 268 PSTYSLKTSNASMESTRKSQS 288
T L +NAS STR + S
Sbjct: 2524 GDTTPLPVTNASSLSTRHATS 2544
Score = 28.1 bits (61), Expect = 9.6
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 212 PLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSMATQTADSLQTSPL----ASTGST 267
P+PV+ + + G+ + T P+ + +A + T+PL S+ ST
Sbjct: 3312 PVPVTSTSSASTGHTTPLPVTDTSSASTGDTTPLPVTSPSSASTGHTTPLHVTIPSSAST 3371
Query: 268 PSTYSLKTSNASMESTRKSQSKPM 291
T +L + AS ST + P+
Sbjct: 3372 GDTSTLPVTGASSASTGHATPLPV 3395
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 241 ITAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKS 286
I+AP TS+ + S ++P +ST S P+T T++A ST S
Sbjct: 1944 ISAPTTSITSAPTTSTTSAPTSSTTSAPTT---STTSAPTSSTTSS 1986
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 242 TAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSN-----ASMESTRKSQSKPMRP 293
T P TS T+T S ++P STP T SL T+ + S +K+ S P P
Sbjct: 1491 TPPTTSKTTETRASGSSAP----SSTPGTVSLSTARTTPAPGTATSVKKTFSTPSPP 1543
>gi|31982904 nucleoporin 35kDa [Homo sapiens]
Length = 326
Score = 29.6 bits (65), Expect = 3.3
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 212 PLPVSPSDDKALGYQLLRQTVQSVFPEVNITAPVTSMATQTADSLQTSPLASTGSTPSTY 271
P PV P+ G +R + + P+TS Q S+ SPL STP T
Sbjct: 75 PQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRR-QPNISVMQSPLVGVTSTPGTG 133
Query: 272 SLKTSNASMESTRKSQSKP 290
S AS+ RK+ P
Sbjct: 134 QSMFSPASIGQPRKTTLSP 152
>gi|4507689 transient receptor potential cation channel, subfamily
M, member 2 [Homo sapiens]
Length = 1503
Score = 29.3 bits (64), Expect = 4.3
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 96 TPMPIIFGSGTVVTVLQQLANEFPFPVNIILSNPWL---FEPLI-----SRFMERNPLTN 147
TP ++ GSG V V+ Q+AN + I L L F+ + SR +E
Sbjct: 348 TPCVVVEGSGRVADVIAQVANLPVSDITISLIQQKLSVFFQEMFETFTESRIVEWTKKIQ 407
Query: 148 AIIRTTTALTIFKAG 162
I+R LT+F+ G
Sbjct: 408 DIVRRRQLLTVFREG 422
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 29.3 bits (64), Expect = 4.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 236 FPEVNITAPVTSMATQTADSLQTSPLASTGSTPSTYSLKTSNASMESTRKSQSK 289
FPE + + ++ + D L + A+ G TP+ +S TSN +M++ SK
Sbjct: 835 FPEAVLLSDERNILSNVDDILAATA-AACGVTPTDFSKSTSNETMQAVEDGDSK 887
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,899,857
Number of Sequences: 37866
Number of extensions: 396659
Number of successful extensions: 1548
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 96
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.