Guide to the Human Genome
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Name: PM20D1 Sequence: fasta or formatted (502aa) NCBI GI: 47458827
Description:

peptidase M20 domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         34           3
 C cysteine            0.4          2           1
 D aspartate           3.4         17           2
 E glutamate           6.2         31           2
 F phenylalanine       6.4         32           2
 G glycine             5.4         27           2
 H histidine           2.4         12           1
 I isoleucine          7.6         38           2
 K lysine              4.0         20           2
 L leucine             9.4         47           3
 M methionine          2.2         11           1
 N asparagine          3.8         19           1
 P proline             6.8         34           2
 Q glutamine           5.4         27           2
 R arginine            4.6         23           2
 S serine              8.0         40           2
 T threonine           6.4         32           3
 V valine              8.8         44           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidase M20 domain containing 1 
LOC100291389          0.298   PREDICTED: hypothetical protein XP_002347666 
ACY1                  0.035   aminoacylase 1 
CNDP2                 0.034   CNDP dipeptidase 2 
CNDP1                 0.026   carnosinase 1 
RAI1                  0.006   retinoic acid induced 1 
TTN                   0.005   titin isoform N2-A 
TTN                   0.005   titin isoform novex-2 
TTN                   0.005   titin isoform novex-1 
TTN                   0.005   titin isoform N2-B 
HELQ                  0.005   DNA helicase HEL308 
TRPM2                 0.004   transient receptor potential cation channel, subfamil...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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