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Search of human proteins with 239747450
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747450 PREDICTED: similar to phosphodiesterase 4D
interacting protein [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747450 PREDICTED: similar to phosphodiesterase 4D interact... 468 e-132
gi|239752897 PREDICTED: similar to phosphodiesterase 4D interact... 381 e-106
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 379 e-105
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 72 5e-13
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 72 5e-13
gi|221218991 neuroblastoma breakpoint family, member 4 [Homo sap... 39 0.004
gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2... 38 0.009
gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1... 38 0.009
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 38 0.009
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 33 0.16
gi|238859651 pleckstrin homology domain containing family A memb... 32 0.48
gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo sap... 32 0.62
gi|4758250 ephrin B2 [Homo sapiens] 31 1.1
gi|45446749 kinesin family member 5A [Homo sapiens] 31 1.1
gi|188219559 protein phosphatase 1, regulatory subunit 15B [Homo... 31 1.1
gi|238859653 pleckstrin homology domain containing family A memb... 30 1.4
gi|14210532 oxysterol-binding protein-like protein 6 isoform a [... 30 1.8
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 30 2.4
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 30 2.4
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 30 2.4
gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|4758650 kinesin family member 5C [Homo sapiens] 30 2.4
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 29 3.1
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 29 3.1
gi|4758648 kinesin family member 5B [Homo sapiens] 29 4.0
gi|70166832 glutamate receptor, ionotropic, N-methyl D-aspartate... 29 4.0
gi|153266778 arg tyrosine kinase isoform c [Homo sapiens] 28 5.3
gi|6382062 arg tyrosine kinase isoform b [Homo sapiens] 28 5.3
>gi|239747450 PREDICTED: similar to phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 236
Score = 468 bits (1204), Expect = e-132
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MPIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL 60
MPIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL
Sbjct: 1 MPIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL 60
Query: 61 EGDATDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTE 120
EGDATDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTE
Sbjct: 61 EGDATDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTE 120
Query: 121 VLGSKGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELR 180
VLGSKGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELR
Sbjct: 121 VLGSKGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELR 180
Query: 181 TKVSKQEWLLQSTAEHLKIDNQQKESMEQFIISQRRFPEREWGKKRAVFPMPHLCC 236
TKVSKQEWLLQSTAEHLKIDNQQKESMEQFIISQRRFPEREWGKKRAVFPMPHLCC
Sbjct: 181 TKVSKQEWLLQSTAEHLKIDNQQKESMEQFIISQRRFPEREWGKKRAVFPMPHLCC 236
>gi|239752897 PREDICTED: similar to phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 259
Score = 381 bits (978), Expect = e-106
Identities = 197/214 (92%), Positives = 201/214 (93%)
Query: 6 DSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKLEGDAT 65
DSAVSPPVRDVGMNS ALVLPSSASST GSETAIINRT+GLGLDTSPVMK PPKLEGDAT
Sbjct: 16 DSAVSPPVRDVGMNSPALVLPSSASSTPGSETAIINRTHGLGLDTSPVMKAPPKLEGDAT 75
Query: 66 DGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGSK 125
DGSFA+KHGRHVIGHIDDYSALRQQI EGKLLVKKIVSLVRSACSFPGLEAQGT VLGSK
Sbjct: 76 DGSFANKHGRHVIGHIDDYSALRQQIVEGKLLVKKIVSLVRSACSFPGLEAQGTGVLGSK 135
Query: 126 GIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRTKVSK 185
GIHELRSSTSALHHALEESASLLTMFWR ALPSTHIP LPGKV ESTERELLELRTKVSK
Sbjct: 136 GIHELRSSTSALHHALEESASLLTMFWRVALPSTHIPVLPGKVGESTERELLELRTKVSK 195
Query: 186 QEWLLQSTAEHLKIDNQQKESMEQFIISQRRFPE 219
QE LLQSTAEHLK NQQKESMEQFI+SQR P+
Sbjct: 196 QERLLQSTAEHLKNANQQKESMEQFIVSQREIPK 229
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 379 bits (973), Expect = e-105
Identities = 196/210 (93%), Positives = 199/210 (94%)
Query: 5 RDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKLEGDA 64
+DSAVSPPVRDVGMNS ALV PSSASST GSET IINR NGLGLDTSPVMKTPPKLEGDA
Sbjct: 2108 QDSAVSPPVRDVGMNSPALVFPSSASSTPGSETPIINRANGLGLDTSPVMKTPPKLEGDA 2167
Query: 65 TDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGS 124
TDGSFA+KHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGS
Sbjct: 2168 TDGSFANKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGS 2227
Query: 125 KGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRTKVS 184
KGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIP LPGKV ESTERELLELRTKVS
Sbjct: 2228 KGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPVLPGKVGESTERELLELRTKVS 2287
Query: 185 KQEWLLQSTAEHLKIDNQQKESMEQFIISQ 214
KQE LLQST EHLK NQQKESMEQFI+SQ
Sbjct: 2288 KQERLLQSTTEHLKNANQQKESMEQFIVSQ 2317
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 71.6 bits (174), Expect = 5e-13
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 19 NSQALVLPSSASST---SGSETAIINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGR 75
+S V P S S T SG++T ++ +G ++P + + G +ASK+GR
Sbjct: 1592 DSSQAVTPKSVSETPPLSGNDTDSLSCDSGSSATSTPCVSR--LVTGHHL---WASKNGR 1646
Query: 76 HVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGSKGIH-----EL 130
HV+G I+DY AL +QI++G+ L+ ++ + A S E LG+KG H +
Sbjct: 1647 HVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAPSSTSQE------LGTKGPHPAPLSKF 1700
Query: 131 RSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRTKVSKQEWLL 190
SS S LEE+ L + WR +LP L + + E+ +L K+ +QE L
Sbjct: 1701 VSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKL 1760
Query: 191 QSTAEHLKID-NQQKESMEQFIISQR 215
Q+T + L++ Q+K +Q +++ +
Sbjct: 1761 QNTMKLLQLSKRQEKVIFDQLVVTHK 1786
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 71.6 bits (174), Expect = 5e-13
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 19 NSQALVLPSSASST---SGSETAIINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGR 75
+S V P S S T SG++T ++ +G ++P + + G +ASK+GR
Sbjct: 1671 DSSQAVTPKSVSETPPLSGNDTDSLSCDSGSSATSTPCVSR--LVTGHHL---WASKNGR 1725
Query: 76 HVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGSKGIH-----EL 130
HV+G I+DY AL +QI++G+ L+ ++ + A S E LG+KG H +
Sbjct: 1726 HVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAPSSTSQE------LGTKGPHPAPLSKF 1779
Query: 131 RSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRTKVSKQEWLL 190
SS S LEE+ L + WR +LP L + + E+ +L K+ +QE L
Sbjct: 1780 VSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKL 1839
Query: 191 QSTAEHLKID-NQQKESMEQFIISQR 215
Q+T + L++ Q+K +Q +++ +
Sbjct: 1840 QNTMKLLQLSKRQEKVIFDQLVVTHK 1865
>gi|221218991 neuroblastoma breakpoint family, member 4 [Homo
sapiens]
Length = 638
Score = 38.9 bits (89), Expect = 0.004
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 28 SASSTSGSETAIINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGRHVIGHIDDYSAL 87
SA++ SG++ L L+ S MK PP+LE DA +GS ++ GR V G I L
Sbjct: 541 SANADSGNQWPF----QELVLEPSLGMKNPPQLEDDALEGSASNTQGRQVTGRIRASLVL 596
Query: 88 RQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGSKG 126
+ +L K R A F G A+ E+ + G
Sbjct: 597 ILKTIRRRLPFSK----WRLAFRFAGPHAESAEIPNTAG 631
>gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2
[Homo sapiens]
Length = 638
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 28 SASSTSGSETAIINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGRHVIGHIDDYSAL 87
SA++ SG++ L L+ S MK PP+LE DA +GS ++ GR V G I L
Sbjct: 541 SANADSGNQWPF----QELVLEPSLGMKNPPQLEDDALEGSASNTQGRQVTGRIRASLVL 596
Query: 88 RQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEV 121
+ +L K R A F G A+ E+
Sbjct: 597 ILKTIRRRLPFSK----WRLAFRFAGPHAESAEI 626
>gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1
[Homo sapiens]
Length = 667
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 28 SASSTSGSETAIINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGRHVIGHIDDYSAL 87
SA++ SG++ L L+ S MK PP+LE DA +GS ++ GR V G I L
Sbjct: 570 SANADSGNQWPF----QELVLEPSLGMKNPPQLEDDALEGSASNTQGRQVTGRIRASLVL 625
Query: 88 RQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEV 121
+ +L K R A F G A+ E+
Sbjct: 626 ILKTIRRRLPFSK----WRLAFRFAGPHAESAEI 655
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 37.7 bits (86), Expect = 0.009
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 49 DTSPVMKTPPKLEGDATDGSFASKHGRHVIGHIDDYSALRQQ--IAEGKLLVKKIVSLVR 106
D P+ P +G G K+ H +A RQ+ G K V
Sbjct: 946 DQEPIRCPVPGCDGQ---GHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEG 1002
Query: 107 SACSFPGLEAQGTEVLGSKGIHELRS----STSALHHALEESASLLTMFWRAALP---ST 159
+C PG + G V GS H S +TSA+ A +LT+ RA+
Sbjct: 1003 MSCPTPGCDGSG-HVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIKQRASNGIENDE 1061
Query: 160 HIPALPGKVRE------STERELLELRTKVSKQEWLLQSTAEHLKIDNQQKESM 207
I L +++E E ++++LRT+++ E L++ E K+ QQ ES+
Sbjct: 1062 EIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESL 1115
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 33.5 bits (75), Expect = 0.16
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 55 KTPPKLEGDATDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGL 114
KT KLEGD+TD S D + L+ QIAE K+ + K +++A +
Sbjct: 1048 KTRRKLEGDSTDLS-------------DQIAELQAQIAELKMQLAKKEEELQAALARVEE 1094
Query: 115 EAQGTEVLGSKGIHELRSSTSALHHALE-ESASLLTMFWRAALPSTHIPALPGKVRESTE 173
EA + + K I EL S S L LE E AS + + AL ++ ++ +
Sbjct: 1095 EA-AQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLD 1153
Query: 174 RELL--ELRTKVSKQEWLLQST-AEHLKIDNQQKESMEQ 209
ELR+K ++ +L+ T E K Q + M Q
Sbjct: 1154 STAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQ 1192
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 32.0 bits (71), Expect = 0.48
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 164 LPGKVRESTERELLE---LRTKVSKQEWLLQSTAEHLKIDNQQKESMEQFIISQRR---- 216
LPG EST + LE L TK+ Q+ LL+ E + ++KE +E + R+
Sbjct: 349 LPGPPLESTFHQSLETDTLLTKLCGQDRLLRRLQEEIDQKQEEKEQLEAALELTRQQLGQ 408
Query: 217 ------FPEREWGKKR 226
P R WG++R
Sbjct: 409 ATREAGAPGRAWGRQR 424
>gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo
sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 0.62
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 167 KVRESTERELLELRTKVSKQEWLLQSTAEHL--------KIDNQQKESMEQFIISQRRFP 218
K + E+E L+ + K QEWL + AE K QQ E E+ I++++F
Sbjct: 218 KAAKELEKEYLQEKAKEKYQEWLKKKNAEECERKKKEKEKEKQQQAEIQEKKEIAEKKF- 276
Query: 219 EREWGKKRAVFPMP 232
+EW + P P
Sbjct: 277 -QEWLENAKHKPRP 289
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 27 SSASSTSGSETA----IINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGRHVIGHID 82
SSA ST + + TNG TSP +K P G +TDG+ A G +++G
Sbjct: 169 SSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNP---GSSTDGNSAGHSGNNILG--- 222
Query: 83 DYSALRQQIAEGKLL-VKKIVSLV 105
AL IA G ++ + I++LV
Sbjct: 223 SEVALFAGIASGCIIFIVIIITLV 246
>gi|45446749 kinesin family member 5A [Homo sapiens]
Length = 1032
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 30/135 (22%)
Query: 95 KLLVKKIVSLVRSACSFPGLEAQGTEVLGSKGIHELRSSTSALHHALEESASLLTMFWRA 154
KL V+ + + V+ + E S GIH + S L + LE+
Sbjct: 799 KLFVQDVTTRVKKSAEM--------EPEDSGGIHSQKQKISFLENNLEQLT--------- 841
Query: 155 ALPSTHIPALPGKVRESTERELLELRTKVSKQEWLLQSTAEHLK-IDNQQKESMEQFIIS 213
KV + R+ +LR ++ K E L++TAE +K ++ KE+ E +
Sbjct: 842 ------------KVHKQLVRDNADLRCELPKLEKRLRATAERVKALEGALKEAKEGAMKD 889
Query: 214 QRRFPEREWGKKRAV 228
+RR+ + K AV
Sbjct: 890 KRRYQQEVDRIKEAV 904
>gi|188219559 protein phosphatase 1, regulatory subunit 15B [Homo
sapiens]
Length = 713
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 138 HHALEESASLLTMFWRAAL--PSTHIPA---LPGKVRESTERELLELRTKV 183
+H+LEE SLL M + P+ +PA +PG +ESTE ++ L T+V
Sbjct: 322 YHSLEEEHSLLRMDPKHCRDNPTQFVPAAGDIPGNTQESTEEKIELLTTEV 372
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 165 PGKVRESTERELLE---LRTKVSKQEWLLQSTAEHLKIDNQQKESMEQFIISQRR----- 216
PG EST + LE L TK+ Q+ LL+ E + ++KE +E + R+
Sbjct: 325 PGPPLESTFHQSLETDTLLTKLCGQDRLLRRLQEEIDQKQEEKEQLEAALELTRQQLGQA 384
Query: 217 -----FPEREWGKKR 226
P R WG++R
Sbjct: 385 TREAGAPGRAWGRQR 399
>gi|14210532 oxysterol-binding protein-like protein 6 isoform a
[Homo sapiens]
Length = 934
Score = 30.0 bits (66), Expect = 1.8
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 125 KGIHELRSSTSALHHALEESASLLTMFWRAALPSTHI--PALPGKVRESTERELLELRTK 182
KGI +++ H SAS T R + S HI S R+LLE
Sbjct: 6 KGISPAHKTSTPTHR----SASSSTSSQRDSRQSIHILERTASSSTEPSVSRQLLEPEPV 61
Query: 183 VSKQEWLLQSTAEHLKIDN---QQKESMEQFIISQRRFPEREWGKK 225
+E E LKI Q+ + E F++ +R++P + W K+
Sbjct: 62 PLSKEADSWEIIEGLKIGQTNVQKPDKHEGFMLKKRKWPLKGWHKR 107
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 2 PIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMK------ 55
P+ S SPP M+ + ++PS+ + GS +N N L +SP +
Sbjct: 211 PLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL---SSPSLNSAVPTP 267
Query: 56 -------TPPKLEGDATDGSFAS 71
TPP + D + S AS
Sbjct: 268 ACPYAPPTPPYVYRDTCNSSLAS 290
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 2 PIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMK------ 55
P+ S SPP M+ + ++PS+ + GS +N N L +SP +
Sbjct: 158 PLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL---SSPSLNSAVPTP 214
Query: 56 -------TPPKLEGDATDGSFAS 71
TPP + D + S AS
Sbjct: 215 ACPYAPPTPPYVYRDTCNSSLAS 237
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 2 PIQRDSAVSPPVRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMK------ 55
P+ S SPP M+ + ++PS+ + GS +N N L +SP +
Sbjct: 204 PLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL---SSPSLNSAVPTP 260
Query: 56 -------TPPKLEGDATDGSFAS 71
TPP + D + S AS
Sbjct: 261 ACPYAPPTPPYVYRDTCNSSLAS 283
>gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 2 PIQRDSAVSPP-VRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL 60
P D+ PP V DV + + VLP S A++ + LG+ ++ P L
Sbjct: 216 PFPHDAVQLPPEVVDVLLEQRLQVLPHSLG-------ALLLQQGPLGVQNLVLLLQEPHL 268
Query: 61 EGDATDGSFASKHGRHVI 78
EG T F K H++
Sbjct: 269 EGSRTHSDFLQKIVAHLV 286
>gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 2 PIQRDSAVSPP-VRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL 60
P D+ PP V DV + + VLP S A++ + LG+ ++ P L
Sbjct: 216 PFPHDAVQLPPEVVDVLLEQRLQVLPHSLG-------ALLLQQGPLGVQNLVLLLQEPHL 268
Query: 61 EGDATDGSFASKHGRHVI 78
EG T F K H++
Sbjct: 269 EGSRTHSDFLQKIVAHLV 286
>gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 2 PIQRDSAVSPP-VRDVGMNSQALVLPSSASSTSGSETAIINRTNGLGLDTSPVMKTPPKL 60
P D+ PP V DV + + VLP S A++ + LG+ ++ P L
Sbjct: 216 PFPHDAVQLPPEVVDVLLEQRLQVLPHSLG-------ALLLQQGPLGVQNLVLLLQEPHL 268
Query: 61 EGDATDGSFASKHGRHVI 78
EG T F K H++
Sbjct: 269 EGSRTHSDFLQKIVAHLV 286
>gi|4758650 kinesin family member 5C [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 167 KVRESTERELLELRTKVSKQEWLLQSTAEHLK-IDNQQKESMEQFIISQRRFPEREWGKK 225
KV + R+ +LR ++ K E L++TAE +K +++ KE+ E + ++R+ + K
Sbjct: 846 KVHKQLVRDNADLRCELPKLEKRLRATAERVKALESALKEAKENAMRDRKRYQQEVDRIK 905
Query: 226 RAV 228
AV
Sbjct: 906 EAV 908
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 29.3 bits (64), Expect = 3.1
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 62 GDATDGSFASKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEV 121
G ATD ++K HV+G ++ ++L Q + L + +V++ G + +
Sbjct: 2231 GTATDLESSAKVVDHVLGPLNSSTSLGQNTSTSSNLQRTVVTVGNKNSHLDGSSSSEMKQ 2290
Query: 122 LGSKGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRT 181
+ + SS + S S A P IP L +V +T REL
Sbjct: 2291 SSASDLVSKSSSLKGEKTKVLSSKSSEGSAHNVAYPG--IPKLAPQVHNTTSREL----- 2343
Query: 182 KVSKQEWLLQSTAEHLKIDNQQKESM 207
VSK + S AE + KE++
Sbjct: 2344 NVSK----IGSFAEPSSVSFSSKEAL 2365
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 29.3 bits (64), Expect = 3.1
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 128 HELRSSTSALHHALEESASLLTMFWRAALPSTHIPALPGKVRESTERELLELRTKVSKQE 187
H L + ++H L +S + ++M A + +P L E +++ L +VS Q+
Sbjct: 253 HSLMTKFESIHFELTQSRAKVSMLESAQQQAASVPIL--------EEQIINLEAEVSAQD 304
Query: 188 WLLQSTAEHLKIDNQQKESMEQ 209
+L+ K++ QK +E+
Sbjct: 305 KVLREAEN--KLEQSQKMVIEK 324
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 167 KVRESTERELLELRTKVSKQEWLLQSTAEHLKIDNQQKESMEQFI 211
K E E+EL + ++S+ E ++S E+L+ Q+K +E+ +
Sbjct: 620 KKMEENEKELAACQLRISQHEAKIKSLTEYLQNVEQKKRQLEESV 664
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 167 KVRESTERELLELRTKVSKQEWLLQSTAEHLK-IDNQQKESMEQFIISQRRFPEREWGKK 225
KV + R+ +LR ++ K E L++TAE +K +++ KE+ E ++R+ + K
Sbjct: 844 KVHKQLVRDNADLRCELPKLEKRLRATAERVKALESALKEAKENASRDRKRYQQEVDRIK 903
Query: 226 RAV 228
AV
Sbjct: 904 EAV 906
>gi|70166832 glutamate receptor, ionotropic, N-methyl
D-aspartate-like 1A isoform 2 [Homo sapiens]
Length = 211
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 155 ALPSTHIPALPGKVRESTERELLELRTKVSKQEWLLQSTAEHLKIDNQQKESMEQ 209
+LP P P + +R L+ELR + +QE LL++ + + I +Q ++ E+
Sbjct: 3 SLPRGFEPQAP---EDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEE 54
>gi|153266778 arg tyrosine kinase isoform c [Homo sapiens]
Length = 1167
Score = 28.5 bits (62), Expect = 5.3
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 129 ELRSSTSALHHALEESASLLTM-FWRAALPSTHIPALPGKVRESTERELLE 178
E + + A E SAS L F R A S+ PALP K R+ + LLE
Sbjct: 572 ENKENIEGAQDATENSASSLAPGFIRGAQASSGSPALPRKQRDKSPSSLLE 622
>gi|6382062 arg tyrosine kinase isoform b [Homo sapiens]
Length = 1182
Score = 28.5 bits (62), Expect = 5.3
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 129 ELRSSTSALHHALEESASLLTM-FWRAALPSTHIPALPGKVRESTERELLE 178
E + + A E SAS L F R A S+ PALP K R+ + LLE
Sbjct: 587 ENKENIEGAQDATENSASSLAPGFIRGAQASSGSPALPRKQRDKSPSSLLE 637
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,851,285
Number of Sequences: 37866
Number of extensions: 355523
Number of successful extensions: 1510
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 58
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.