Search of human proteins with 239746978

Search of human proteins with 239746978

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746978 PREDICTED: hypothetical protein XP_002343901 [Homo
sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752453 PREDICTED: hypothetical protein XP_002348279 [Homo ...   223   2e-59
gi|239746978 PREDICTED: hypothetical protein XP_002343901 [Homo ...   223   2e-59
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     35   0.017
gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]            31   0.18 
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ...    31   0.18 
gi|5032055 reticulon 2 isoform A [Homo sapiens]                        31   0.18 
gi|46255005 reticulon 2 isoform B [Homo sapiens]                       31   0.18 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    31   0.24 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    31   0.24 
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain...    31   0.24 
gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]              31   0.24 
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ...    30   0.53 
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ...    29   0.70 
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  29   0.91 
gi|194239664 SHC (Src homology 2 domain containing) transforming...    29   0.91 
gi|194239662 SHC (Src homology 2 domain containing) transforming...    29   0.91 
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...    29   0.91 
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe...    29   0.91 
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe...    29   0.91 
gi|210147453 nuclear localized factor 3 [Homo sapiens]                 28   1.2  
gi|239752937 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo ...    28   1.6  
gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo ...    28   1.6  
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    28   1.6  
gi|221139764 PHD and ring finger domains 1 [Homo sapiens]              28   1.6  
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]      28   1.6  
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|169171411 PREDICTED: mucin 3B, partial [Homo sapiens]               28   2.0  
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]            28   2.0  

>gi|239752453 PREDICTED: hypothetical protein XP_002348279 [Homo
           sapiens]
          Length = 103

 Score =  223 bits (569), Expect = 2e-59
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD 60
           MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD
Sbjct: 1   MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD 60

Query: 61  LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS 103
           LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS
Sbjct: 61  LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS 103


>gi|239746978 PREDICTED: hypothetical protein XP_002343901 [Homo
           sapiens]
          Length = 103

 Score =  223 bits (569), Expect = 2e-59
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD 60
           MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD
Sbjct: 1   MGKCPDTLSLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD 60

Query: 61  LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS 103
           LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS
Sbjct: 61  LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTCCS 103


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 17/106 (16%)

Query: 5   PDTLSLSGTPHGLRLPHSWAQTWLVGQLG--KLFSGHSLPDA-RGASIGSRIPAEPGPD- 60
           P  LS+        LP        +G  G   L+ G   PD  RG      +P  PGPD 
Sbjct: 388 PPGLSIGDGDQRRGLPGEMGPKGFIGDPGIPALYGGPPGPDGKRGPPGPPGLPGPPGPDG 447

Query: 61  -----LGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRGDLTC 101
                 GA  R  FP          PG  GAR P G K   G+  C
Sbjct: 448 FLFGLKGAKGRAGFPG--------LPGSPGARGPKGWKGDAGECRC 485


>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 30  GQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPASLPAFSNPAPGRRGARRP 89
           GQ+G+    H    AR ++ G+R P EP     ++W    P SL +     P RR A R 
Sbjct: 42  GQVGRRLPIH----ARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRG 97

Query: 90  YGAKPGR 96
                GR
Sbjct: 98  STVSRGR 104


>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
           sapiens]
          Length = 136

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 30  GQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPASLPAFSNPAPGRRGARRP 89
           GQ+G+    H    AR ++ G+R P EP     ++W    P SL +     P RR A R 
Sbjct: 42  GQVGRRLPIH----ARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRG 97

Query: 90  YGAKPGR 96
                GR
Sbjct: 98  STVSRGR 104


>gi|5032055 reticulon 2 isoform A [Homo sapiens]
          Length = 545

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 12  GTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPA 71
           GTP  L   +  A   +VG  G+  S    P  +G S+       P P LG S       
Sbjct: 57  GTPRELTFSYI-AFDGVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLE----- 110

Query: 72  SLPAFS-NPAPGRRG 85
           S+P+ S +P PGRRG
Sbjct: 111 SIPSLSQSPEPGRRG 125


>gi|46255005 reticulon 2 isoform B [Homo sapiens]
          Length = 472

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 12  GTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPA 71
           GTP  L   +  A   +VG  G+  S    P  +G S+       P P LG S       
Sbjct: 57  GTPRELTFSYI-AFDGVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLE----- 110

Query: 72  SLPAFS-NPAPGRRG 85
           S+P+ S +P PGRRG
Sbjct: 111 SIPSLSQSPEPGRRG 125


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 12  GTPHGLRLPHSWAQTWLVGQLGKL-FSGH-SLPDARGASIGSRIPAEPGPD--LGASWRL 67
           G P    +P       LVG  G+  F G    P A+G      +P  PG D   GAS   
Sbjct: 678 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG-- 735

Query: 68  RFPASLPAFSNPA-----PGRRGARRPYGAKPGRGDL 99
             PA  P    P      PG RGA    G K  RGD+
Sbjct: 736 --PAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 770


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 12  GTPHGLRLPHSWAQTWLVGQLGKL-FSGH-SLPDARGASIGSRIPAEPGPD--LGASWRL 67
           G P    +P       LVG  G+  F G    P A+G      +P  PG D   GAS   
Sbjct: 609 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG-- 666

Query: 68  RFPASLPAFSNPA-----PGRRGARRPYGAKPGRGDL 99
             PA  P    P      PG RGA    G K  RGD+
Sbjct: 667 --PAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 701


>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
            proline-rich containing [Homo sapiens]
          Length = 1435

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 42   PDARGASIGSRIPAEPGPDLGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRG 97
            P A  ++ GS  PA PGP  G   R+  P +     +P   R   RR +  +P  G
Sbjct: 982  PQAGPSARGSPSPAAPGPPAGPLPRMDLPLAGQPLRHPTRARPRPRRQHHHRPPPG 1037


>gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]
          Length = 478

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 58 GPDLGASWRLR--FPASLPAFSNPAPGRRGARR 88
          GP LGASWR R    A+LPA + P PGR   RR
Sbjct: 20 GPGLGASWRSREAAAAALPA-AVPGPGRVYGRR 51


>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
           sapiens]
          Length = 918

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 54  PAEPGPDLGASWRLRFPA----SLPAFSNPAPGRRGARRPYGAKPGR 96
           P  P P+   S     P     +LPA  NP PGRR   RP GA P R
Sbjct: 839 PIPPAPNCIVSQDFSRPRPPQKALPA--NPVPGRRSLPRPGGASPLR 883


>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
           sapiens]
          Length = 193

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 38  GHSLPDARGASIGSRIPAEPGPDL-GASWRLRFPASLPAFSNPAPGRRGARR 88
           G  +P+ R    G     E G D+ G  W+   P  LP    P PG RG  R
Sbjct: 79  GQHVPELRSRKPGPAARTEEGGDVTGRPWQ---PPLLPPPGVPTPGNRGGER 127


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 52  RIPAEPGPDLGASWRLRFPASLPAFSNPAPGRRGARRPYGA 92
           R+P  PG + G       P S+PA S+P P + G   P GA
Sbjct: 326 RLPVFPG-EKGLPGLSYLPKSVPAHSDPGPQKSGRVLPLGA 365


>gi|194239664 SHC (Src homology 2 domain containing) transforming
          protein 1 isoform 3 [Homo sapiens]
          Length = 584

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 41 LPDARGASIGSRIPAEPGPDLGASWRLRFP-ASLPAFSNPAPGRRGARRPYGAKPGR 96
          LP    +S+G  +P  PG D   +    FP  S    +NPA GR G++     +PGR
Sbjct: 34 LPSPSASSLGPILPPLPGDDSPTTLCSFFPRMSNLRLANPAGGRPGSK----GEPGR 86


>gi|194239662 SHC (Src homology 2 domain containing) transforming
          protein 1 isoform 1 [Homo sapiens]
          Length = 583

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 41 LPDARGASIGSRIPAEPGPDLGASWRLRFP-ASLPAFSNPAPGRRGARRPYGAKPGR 96
          LP    +S+G  +P  PG D   +    FP  S    +NPA GR G++     +PGR
Sbjct: 34 LPSPSASSLGPILPPLPGDDSPTTLCSFFPRMSNLRLANPAGGRPGSK----GEPGR 86


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 9   SLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD--LGASWR 66
           S SG+    R      + WL  Q G L  G   PD + +     IP + GP    G    
Sbjct: 104 SPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPP 163

Query: 67  LRFPASLPAFSNPAPGRRG----ARRPYGAKPGRGDLT 100
            +   S  A SN   G +G     R  YG  P R  ++
Sbjct: 164 KKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATIS 201


>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
           [Homo sapiens]
          Length = 496

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 9   SLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD--LGASWR 66
           S SG+    R      + WL  Q G L  G   PD + +     IP + GP    G    
Sbjct: 104 SPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPP 163

Query: 67  LRFPASLPAFSNPAPGRRG----ARRPYGAKPGRGDLT 100
            +   S  A SN   G +G     R  YG  P R  ++
Sbjct: 164 KKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATIS 201


>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
           [Homo sapiens]
          Length = 496

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 9   SLSGTPHGLRLPHSWAQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPD--LGASWR 66
           S SG+    R      + WL  Q G L  G   PD + +     IP + GP    G    
Sbjct: 104 SPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPP 163

Query: 67  LRFPASLPAFSNPAPGRRG----ARRPYGAKPGRGDLT 100
            +   S  A SN   G +G     R  YG  P R  ++
Sbjct: 164 KKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATIS 201


>gi|210147453 nuclear localized factor 3 [Homo sapiens]
          Length = 421

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 29  VGQLGKLFSGHSLPDARGAS---IGSRIPAEPGPDLG 62
           VG+ G L +  S PDA   S   +  R P EPGP+ G
Sbjct: 257 VGRHGSLSADDSTPDASPGSRRRLTRRAPPEPGPESG 293


>gi|239752937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 101

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 17 LRLPHSWAQTWLVGQLGKLFSGHSLPDARGASI-GSRIPAEPGPDLGASWRLRFPASLPA 75
          LR+   W    + G+L  L +G      RGA + G R+       LG   R       PA
Sbjct: 15 LRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRL-------LGVGVR------RPA 61

Query: 76 FSNPAPGRRG 85
           S  APGRRG
Sbjct: 62 GSRLAPGRRG 71


>gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo
          sapiens]
          Length = 101

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 17 LRLPHSWAQTWLVGQLGKLFSGHSLPDARGASI-GSRIPAEPGPDLGASWRLRFPASLPA 75
          LR+   W    + G+L  L +G      RGA + G R+       LG   R       PA
Sbjct: 15 LRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRL-------LGVGVR------RPA 61

Query: 76 FSNPAPGRRG 85
           S  APGRRG
Sbjct: 62 GSRLAPGRRG 71


>gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo
          sapiens]
          Length = 101

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 17 LRLPHSWAQTWLVGQLGKLFSGHSLPDARGASI-GSRIPAEPGPDLGASWRLRFPASLPA 75
          LR+   W    + G+L  L +G      RGA + G R+       LG   R       PA
Sbjct: 15 LRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRL-------LGVGVR------RPA 61

Query: 76 FSNPAPGRRG 85
           S  APGRRG
Sbjct: 62 GSRLAPGRRG 71


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 53   IPAEPGP------DLGASWRLRFPASLPA-FSNPAPGRRGARRPYGAKP 94
            IP EP         + A  R   P+ LP+  S P PG  G RRP+  KP
Sbjct: 1632 IPHEPKEVRFVVRSVSARSRSPSPSPLPSPASGPGPGAPGPRRPFQQKP 1680


>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
          Length = 1648

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 12/47 (25%)

Query: 51  SRIPAEPGPDLGASWRLRFPASLPAFSNPAPGRRGARRPYGAKPGRG 97
           SR+P EPG   G+S              PAP   G+  P G   G+G
Sbjct: 734 SRVPREPGVHTGSS------------RPPAPSSHGSLAPLGPSRGKG 768


>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
          Length = 360

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 44  ARGASIGSRIPAEPGPDLGASWRLRFPASLP 74
           ARGA+ GS +PA PGP      R   PA  P
Sbjct: 77  ARGAAAGSGVPAAPGPSGRTRRRPDAPAPDP 107


>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 55  AEPGPDLGAS---WRLRFPASLPAFSNPAPGRRGARRP 89
           A+ GP  G     W    P ++PA   PAP  RG ++P
Sbjct: 69  AQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQP 106


>gi|169171411 PREDICTED: mucin 3B, partial [Homo sapiens]
          Length = 249

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 24 AQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPASLPAFSNPAPGR 83
          A  W  G L    S   +P  R  +  + +   P     A W    P  +P  ++PAPG 
Sbjct: 15 ASPWATGTLSTATSISQVPFPRAEAASAVLSNSPHSRDLAGW----PLGVPQLASPAPGH 70

Query: 84 R 84
          R
Sbjct: 71 R 71


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 11/52 (21%)

Query: 51  SRIPAEPGPDLG---------ASWRLRFPA--SLPAFSNPAPGRRGARRPYG 91
           SR P E GP  G              R PA    P+ S P+PGRR  +R  G
Sbjct: 176 SRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAG 227


>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
          Length = 1486

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 24 AQTWLVGQLGKLFSGHSLPDARGASIGSRIPAEPGPDLGASWRLRFPASLPAFSNPAPGR 83
          A  W  G L    S   +P  R  +  + +   P     A W    P  +P  ++PAPG 
Sbjct: 15 ASPWATGTLSTATSISQVPFPRAEAASAVLSNSPHSRDLAGW----PLGVPQLASPAPGH 70

Query: 84 R 84
          R
Sbjct: 71 R 71


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.139    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,722,082
Number of Sequences: 37866
Number of extensions: 313452
Number of successful extensions: 1168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 158
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.