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Search of human proteins with 117190192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform
a [Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 602 e-172
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 602 e-172
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 567 e-162
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 567 e-162
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 514 e-146
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 502 e-142
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 501 e-142
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 501 e-142
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 501 e-142
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 271 4e-73
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 271 4e-73
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 271 4e-73
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 271 4e-73
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 217 9e-57
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 196 2e-50
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 58 1e-08
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 52 7e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 52 7e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 52 7e-07
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 52 9e-07
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 51 1e-06
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 51 1e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 51 1e-06
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 51 1e-06
gi|4557509 cylicin 2 [Homo sapiens] 51 1e-06
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 51 1e-06
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 50 2e-06
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 50 2e-06
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 50 3e-06
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 49 4e-06
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 602 bits (1552), Expect = e-172
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 301 NGEDDS 306
NGEDDS
Sbjct: 301 NGEDDS 306
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 602 bits (1552), Expect = e-172
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 301 NGEDDS 306
NGEDDS
Sbjct: 301 NGEDDS 306
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 567 bits (1461), Expect = e-162
Identities = 293/306 (95%), Positives = 293/306 (95%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 108 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 168 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 228 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 287
Query: 301 NGEDDS 306
NGEDDS
Sbjct: 288 NGEDDS 293
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 567 bits (1461), Expect = e-162
Identities = 293/306 (95%), Positives = 293/306 (95%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 108 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 168 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 228 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 287
Query: 301 NGEDDS 306
NGEDDS
Sbjct: 288 NGEDDS 293
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 514 bits (1324), Expect = e-146
Identities = 266/306 (86%), Positives = 278/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
S+KKDET+VKMESEGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS
Sbjct: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST 287
Query: 301 NGEDDS 306
NG+DDS
Sbjct: 288 NGQDDS 293
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 502 bits (1292), Expect = e-142
Identities = 259/306 (84%), Positives = 276/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
S+KKDET+VKMESEGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS
Sbjct: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST 287
Query: 301 NGEDDS 306
NG+DDS
Sbjct: 288 NGQDDS 293
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 501 bits (1290), Expect = e-142
Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDY+ QRDYY MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 108 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SS
Sbjct: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
S KKD+T+VKMESEGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD A
Sbjct: 228 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA 287
Query: 301 NGEDDS 306
NG+DDS
Sbjct: 288 NGQDDS 293
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 501 bits (1290), Expect = e-142
Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDY+ QRDYY MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 108 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SS
Sbjct: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
S KKD+T+VKMESEGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD A
Sbjct: 228 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA 287
Query: 301 NGEDDS 306
NG+DDS
Sbjct: 288 NGQDDS 293
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 501 bits (1290), Expect = e-142
Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
Query: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
SFDLDY+ QRDYY MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 108 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
Query: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SS
Sbjct: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS 227
Query: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
S KKD+T+VKMESEGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD A
Sbjct: 228 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA 287
Query: 301 NGEDDS 306
NG+DDS
Sbjct: 288 NGQDDS 293
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
Query: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
Query: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
Query: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
Query: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
Query: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
Query: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
Query: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
Query: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
Query: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 21 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 81 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 137
Query: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 138 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 194
Query: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 195 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 254
Query: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 255 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 217 bits (553), Expect = 9e-57
Identities = 125/226 (55%), Positives = 155/226 (68%), Gaps = 23/226 (10%)
Query: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY--------------SG 111
Query: 122 FDLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNS 175
+ DYD+ R D+YDR++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 112 YIFDYDYYRDDFYDRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFAR 169
Query: 176 KSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 170 STAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 196 bits (498), Expect = 2e-50
Identities = 117/225 (52%), Positives = 144/225 (64%), Gaps = 37/225 (16%)
Query: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
Query: 122 FDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSK 176
R++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 110 -------------RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARS 154
Query: 177 SGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 155 TAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 57.8 bits (138), Expect = 1e-08
Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 13/160 (8%)
Query: 5 VTNKTDPRSMNS-RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNA 63
V + PR +N+ ++F+GN++ + ++ ++F + G+++ C V K +AFV E +A
Sbjct: 67 VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Query: 64 RAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLL---SS 120
+AA+A +G+ + G+ +++ L+ + + K G A G T+ P +
Sbjct: 126 KAAIAQLNGKEVKGKRINVELSTKGQ----KKG--PGLAVQSGDKTKKPGAGDTAFPGTG 179
Query: 121 SFDLDYDFQRDYYDRM--YSYPARVPPPPPIARAVVPSKR 158
F +D+Q+ + + + AR P PP R P +R
Sbjct: 180 GFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRR 219
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMI- 75
++F+GN++ ++ A+F+ YG ++ C+V K FAFV A A+ G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 76 AGQVLDINLAAEPKVNRGKAGVKRSAA 102
G+ L + ++ +N K V +A
Sbjct: 62 PGRALVVEMSRPRPLNTWKIFVGNVSA 88
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 52.0 bits (123), Expect = 7e-07
Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 48/316 (15%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIA 76
RV+IG L+ ++ DVE F YGKI+ + G+ FV++ + R+A AV +G+ +
Sbjct: 3 RVYIGRLS-YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61
Query: 77 GQVLDINLAAEPK------VNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 130
G+ + + A P+ R G +RS + YG T + + S + +
Sbjct: 62 GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLK 121
Query: 131 DY--------------------------YDRMYSYPARVPPPPPIARAV-----VPSKRQ 159
DY Y M ++ R + P R+
Sbjct: 122 DYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRR 181
Query: 160 RVSGNTSR-----RGKSGFNSKSGQR-GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLEN 213
R S + SR R +S + KS R GSSKS K ++ + ++ + K S ++
Sbjct: 182 RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKS---RSRSRSGSRSRSKSRSRSQS 238
Query: 214 LEKIEKEQSKQ-AVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDN 272
+ +KE+S+ + E +S S S KD+ K+++ +
Sbjct: 239 RSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKS 298
Query: 273 EDRGDDQLELIKDDEK 288
+ R Q ++++++
Sbjct: 299 KSRSRSQERRVEEEKR 314
Score = 28.9 bits (63), Expect = 6.0
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 158 RQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQ--IKQKVDSLLENLE 215
R R + S KS S+SG R SKS + + KKE ++ K+K S +
Sbjct: 205 RSRSGSSKSSHSKSRSRSRSGSRSRSKS-RSRSQSRSRSKKEKSRSPSKEKSRSRSHSAG 263
Query: 216 KI---EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDL 266
K K+Q+++ ++ ++ + + S S K ++ + S+ + + G +
Sbjct: 264 KSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSV 317
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 52.0 bits (123), Expect = 7e-07
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIV------GCSVHK--GFAFVQYVNERNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+IV C +K GFAF+ + +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 52.0 bits (123), Expect = 7e-07
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIV------GCSVHK--GFAFVQYVNERNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+IV C +K GFAF+ + +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 51.6 bits (122), Expect = 9e-07
Identities = 65/288 (22%), Positives = 120/288 (41%), Gaps = 39/288 (13%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIA 76
RV+IG L+ V++ D++ FS YG+++ + G+ FV++ + R+A AV +G+ +
Sbjct: 3 RVYIGRLS-YNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 77 GQVLDINLAAEPKVNR------------GKAGVKRSAAEMYGSV--TEHPSPSPLLSS-- 120
G+ + + A P+ +R G + + S + YG TE+ LSS
Sbjct: 62 GERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRC 121
Query: 121 SFDLDYDFQRDYYDRMY--SYPARVPPPPPIARAVVPSKR--QRVSG------------- 163
S+ DF R + Y ++ R R+ KR ++ G
Sbjct: 122 SWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181
Query: 164 ---NTSRRGKSG--FNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIE 218
+ RR SG S+S +R S+S + ++I K ++ + + + K
Sbjct: 182 KPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGR 241
Query: 219 KEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDL 266
K +SK + K+D+ S S K + + S + +GD+
Sbjct: 242 KSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDI 289
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 170 KSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK-IEKEQSKQAVEM 228
K GF Q+ S + ++G + + KKE + K D L K E + +K++ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 229 KNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 288
E E+ S + DE + +SE G++ EE L D D E + E + D E
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKEL 592
Query: 289 EAEEGEDDRDSANGEDD 305
E E+D +++ EDD
Sbjct: 593 E----ENDSENSEFEDD 605
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 43/260 (16%)
Query: 88 PKVNRG-KAGVKRSAAEMYGS-----VTEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP- 140
P+ NRG + SA+E G +EHPS S + + F+ ++ +
Sbjct: 376 PEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTE 435
Query: 141 -------------ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQ-----RGS 182
A+ P A P K G R + + K + RGS
Sbjct: 436 DGGEFEEGASENNAKESSPEKEAEEGCPEKESE-EGCPKRGFEGSCSQKESEEGNPVRGS 494
Query: 183 SKSGKLKGDDLQAIKKELTQ---IKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSS 239
+ K + +K + + K+ D L + E+ E +K++ E ++K +E S
Sbjct: 495 EEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE-EVGPTKESEEDDSEKESDEDCS 553
Query: 240 SSVKKDETNVKMESEGGADDSAEEG-------DLLD------DDDNEDRGDDQLELIKDD 286
+D + + E G D EEG ++LD D +N + DD E + D+
Sbjct: 554 EKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDE 613
Query: 287 EKEAEEGEDDRDSANGEDDS 306
E E ++D D E+D+
Sbjct: 614 EGSEREFDEDSDEKEEEEDT 633
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 156 SKRQRVSGNTSRRGKSGFNSKSGQRGSSKS--GKLKGDDLQAIKKELTQIKQKVDSLLEN 213
S++Q G+ ++G + GS K + +L+ E ++ + +
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED------DG 606
Query: 214 LEKI--EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESE-------GGADDSAEEG 264
EK+ E+ ++ E ++K EEE + V DE++ K + E AD AEEG
Sbjct: 607 SEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEG 666
Query: 265 D-----LLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 306
D + DD ED D E+ DEK E+ + + + E+DS
Sbjct: 667 DADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 170 KSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK-IEKEQSKQAVEM 228
K GF Q+ S + ++G + + KKE + K D L K E + +K++ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 229 KNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 288
E E+ S + DE + +SE G++ EE L D D E + E + D E
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKEL 592
Query: 289 EAEEGEDDRDSANGEDD 305
E E+D +++ EDD
Sbjct: 593 E----ENDSENSEFEDD 605
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 43/260 (16%)
Query: 88 PKVNRG-KAGVKRSAAEMYGS-----VTEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP- 140
P+ NRG + SA+E G +EHPS S + + F+ ++ +
Sbjct: 376 PEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTE 435
Query: 141 -------------ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQ-----RGS 182
A+ P A P K G R + + K + RGS
Sbjct: 436 DGGEFEEGASENNAKESSPEKEAEEGCPEKESE-EGCPKRGFEGSCSQKESEEGNPVRGS 494
Query: 183 SKSGKLKGDDLQAIKKELTQ---IKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSS 239
+ K + +K + + K+ D L + E+ E +K++ E ++K +E S
Sbjct: 495 EEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE-EVGPTKESEEDDSEKESDEDCS 553
Query: 240 SSVKKDETNVKMESEGGADDSAEEG-------DLLD------DDDNEDRGDDQLELIKDD 286
+D + + E G D EEG ++LD D +N + DD E + D+
Sbjct: 554 EKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDE 613
Query: 287 EKEAEEGEDDRDSANGEDDS 306
E E ++D D E+D+
Sbjct: 614 EGSEREFDEDSDEKEEEEDT 633
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 156 SKRQRVSGNTSRRGKSGFNSKSGQRGSSKS--GKLKGDDLQAIKKELTQIKQKVDSLLEN 213
S++Q G+ ++G + GS K + +L+ E ++ + +
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED------DG 606
Query: 214 LEKI--EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESE-------GGADDSAEEG 264
EK+ E+ ++ E ++K EEE + V DE++ K + E AD AEEG
Sbjct: 607 SEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEG 666
Query: 265 D-----LLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 306
D + DD ED D E+ DEK E+ + + + E+DS
Sbjct: 667 DADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +E +F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P RG+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +E +F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P RG+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 50.8 bits (120), Expect = 1e-06
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 25/179 (13%)
Query: 141 ARVPPPPPIARAVVPSKRQRVS--GNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKK 198
AR P P V SK + G K +S+S + K K KG D++ K+
Sbjct: 94 ARRQPLKPTRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSK-KGKDIEKGKE 152
Query: 199 ELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGAD 258
E K+D+ +K K+ K A + K+ +E E KKD K +S G D
Sbjct: 153 E------KLDA-----KKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKD 201
Query: 259 DSAE--------EGDLLDDDDNEDRGDD---QLELIKDDEKEAEEGEDDRDSANGEDDS 306
+ E E D + +G D +L+ +K DEK+ E+G+ D + + D+
Sbjct: 202 SATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDA 260
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +EA+F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 129 QRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKL 188
+ DY + + A++ P + +V K + + T K G++ + + ++
Sbjct: 73 EEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATE---------KGGEKKEAVAAEV 123
Query: 189 KGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETN 248
K ++ + E Q ++K ++ E+ ++ +E K+ DK+ E+ + +K++
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKE------DKNGNEKGEDAKEKEDGK 177
Query: 249 VKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGED 304
+ +G +D E+G+ D+ + EDR + D KE E+G++ D G+D
Sbjct: 178 KGEDGKGNGEDGKEKGE--DEKEEEDRKE------TGDGKENEDGKEKGDKKEGKD 225
Score = 42.0 bits (97), Expect = 7e-04
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 169 GKSGFNSKSGQRGSS-KSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVE 227
GK + K + G K+G KG+D K+K D K E K+ E
Sbjct: 145 GKEDKDEKGEEDGKEDKNGNEKGEDA----------KEKEDGKKGEDGKGNGEDGKEKGE 194
Query: 228 MKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDE 287
+ ++ + +++ + ++ K + + G D +E + +D ED G ++ E K+ E
Sbjct: 195 DEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKE 254
Query: 288 KEAEEGEDDRDSANGEDD 305
EE E + EDD
Sbjct: 255 DLKEEEEGKEEDEIKEDD 272
Score = 41.6 bits (96), Expect = 9e-04
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 157 KRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK 216
K G ++ + G + G +G+ + GK KG+D +KE K+ D EN +
Sbjct: 161 KNGNEKGEDAKEKEDGKKGEDG-KGNGEDGKEKGED----EKEEEDRKETGDGK-ENEDG 214
Query: 217 IEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRG 276
EK K+ ++K + E+E+ E EGG ++ A G +D E+ G
Sbjct: 215 KEKGDKKEGKDVKVKEDEKEREDGK----------EDEGGNEEEA--GKEKEDLKEEEEG 262
Query: 277 DDQLELIKDDEKEAE 291
++ E+ +DD K+ E
Sbjct: 263 KEEDEIKEDDGKKEE 277
Score = 38.5 bits (88), Expect = 0.008
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 176 KSGQRGSSKSGKLKGD----DLQAIKKELTQIKQKV---DSLLENLEKIEKE------QS 222
K + SS+ K K D ++ + + + KQ+ + EN + E +
Sbjct: 35 KPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASE 94
Query: 223 KQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLEL 282
K+ VE+K + E+ KK+ ++++E +D E+ ++D NE++G+ E
Sbjct: 95 KEIVEVKEENIEDATEKGGEKKEAVAAEVKNE--EEDQKED----EEDQNEEKGEAGKE- 147
Query: 283 IKDDEKEAEEGEDDRD-SANGED 304
DEK E+G++D++ + GED
Sbjct: 148 -DKDEKGEEDGKEDKNGNEKGED 169
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 50.1 bits (118), Expect = 2e-06
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 35/177 (19%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LN +K+ +EA F KYG+IV + K GFAFV + + +A+AA
Sbjct: 9 KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKV-----------NRGKAGVKRSAAEMYGSVTEHPS-PSP 116
+G+ + G+ + + A +P +RG+ R G PS P
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127
Query: 117 LLSSSFDLDYDFQRDYYDRMYSYPARVPPP----PPIARAVVPSKRQRVSGNTSRRG 169
+ D+D + P+R P P PP R P KR SG G
Sbjct: 128 DDDGGYTADFDLR----------PSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSG 174
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 49.7 bits (117), Expect = 3e-06
Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 40/270 (14%)
Query: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNA 63
R N+ +F+ N+ + D+ F +YG IV V +GFA+VQ+ + R+A
Sbjct: 6 RPPNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 64 RAAVAGEDGRMIAGQVLDINLA----AEPKVNRGKAGVKRSAAEMYGSVTEH-----PSP 114
A+ D + I G+ ++I A P + K G ++ Y + S
Sbjct: 65 EDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSY 124
Query: 115 SPLLSSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSR---RGKS 171
S S DY+++R Y P +R +R R + R R +S
Sbjct: 125 ERRRSRSRSFDYNYRRSY-------------SPRNSRPTGRPRRSRSHSDNDRFKHRNRS 171
Query: 172 GFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIK----QKVDSL--LENLEKIEKEQSKQA 225
SKS R SKS K ++ + + K K DS ++ + EKE K+
Sbjct: 172 FSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKE 231
Query: 226 VEMKNDKSEEEQSSSSVKKDETNVKMESEG 255
+S + S S + + +S G
Sbjct: 232 PPRSKSQSRSQSRSRSKSRSRSWTSPKSSG 261
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 196 IKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD---------- 245
++ E +++++ + ++ E L KE+ K+A E K ++ E E+ + KK
Sbjct: 462 VEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVK 521
Query: 246 ETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGED 304
E + E E G ++ EE + D E+ G ++ + +E E EEGE + + A GE+
Sbjct: 522 EEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAE-AEGEE 579
Score = 38.9 bits (89), Expect = 0.006
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 197 KKELTQIKQKVDSLLENLEKIEKEQSKQ-AVEMKNDKSEEEQSSSSVKKDETNVKMESEG 255
KKE + K++ E +K K A E+K ++ E+E+ +++E E EG
Sbjct: 488 KKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEE-----EDEG 542
Query: 256 GADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGE 294
D AEEG + +E +Q E + E E EE E
Sbjct: 543 AKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAE 581
Score = 30.0 bits (66), Expect = 2.7
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
Query: 143 VPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQ 202
VP P + P + V + KS + SK+ KG+ + +KE+ +
Sbjct: 656 VPKSPVEEKGKSPVSKSPVE----EKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKE 711
Query: 203 IKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAE 262
++ EK+EK++ K + K+E +V + T K ++ E
Sbjct: 712 APKE--------EKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKE 763
Query: 263 EGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA-NGE 303
EG L + +++ + ++ + +G D A NGE
Sbjct: 764 EGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGE 805
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.126 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,791,082
Number of Sequences: 37866
Number of extensions: 594122
Number of successful extensions: 10529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 722
Number of HSP's that attempted gapping in prelim test: 5006
Number of HSP's gapped (non-prelim): 3883
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.