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Search of human proteins with 239746873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo ... 197 2e-51
gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo ... 197 2e-51
gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo ... 197 2e-51
gi|239754316 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239748867 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239742896 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 32 0.14
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 31 0.24
gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 0.54
gi|119943104 CREB binding protein isoform a [Homo sapiens] 30 0.54
gi|50345997 E1A binding protein p300 [Homo sapiens] 29 0.93
gi|239755924 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo ... 28 2.1
gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo ... 28 2.1
gi|214831495 hypothetical protein LOC285679 [Homo sapiens] 28 2.1
gi|239755468 PREDICTED: MAS-related GPR, member G [Homo sapiens] 27 2.7
gi|239749963 PREDICTED: MAS-related GPR, member G [Homo sapiens] 27 2.7
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 27 2.7
gi|239744271 PREDICTED: MAS-related GPR, member G [Homo sapiens] 27 2.7
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 27 3.5
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 27 3.5
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|169168458 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo ... 27 4.6
gi|22547204 hairless protein isoform a [Homo sapiens] 27 4.6
gi|22547207 hairless protein isoform b [Homo sapiens] 27 4.6
gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens] 27 4.6
gi|53832024 nuclear factor of kappa light polypeptide gene enhan... 27 4.6
gi|13899229 nuclear factor of kappa light polypeptide gene enhan... 27 4.6
gi|158634482 poly (ADP-ribose) polymerase family, member 3 isofo... 27 4.6
>gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo
sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL
Sbjct: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
Query: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC
Sbjct: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
>gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo
sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL
Sbjct: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
Query: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC
Sbjct: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
>gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo
sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL
Sbjct: 1 MWAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRL 60
Query: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC
Sbjct: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
>gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
>gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
>gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 29 LLESDILEIQLGREVGDSVNEGADCRRALRRLAECGTPRGQEQGPHYRPTPRLPHRP 85
L S+IL++ L R E + L E TP + P P LPH P
Sbjct: 149 LSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLP 205
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 24 LSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLAE---CGTPRGQEQGPHYRPTPR 80
LS ++ E +I+ + R+ + E A + +R +A+ C TPR E PH +P+PR
Sbjct: 25 LSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAENQPH-QPSPR 83
Query: 81 LPHRPF 86
L H+ F
Sbjct: 84 L-HQQF 88
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 57 LRRLAECGTPRGQEQGPHYRPTPRLPHRPFP 87
+R A +PR Q Q PH P+PR+ +P P
Sbjct: 2305 VRSPAPVQSPRPQSQPPHSSPSPRIQPQPSP 2335
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 57 LRRLAECGTPRGQEQGPHYRPTPRLPHRPFP 87
+R A +PR Q Q PH P+PR+ +P P
Sbjct: 2343 VRSPAPVQSPRPQSQPPHSSPSPRIQPQPSP 2373
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 28.9 bits (63), Expect = 0.93
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 TPRGQEQGPHYRPTPRLPHRPFP 87
+PR Q Q PH P+PR+ +P P
Sbjct: 2315 SPRPQSQPPHSSPSPRMQPQPSP 2337
>gi|239755924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 GTPRGQEQGPHYRPTPRLPHRPFPAAALG 92
G+P+ +++ P RP PRL P PA ALG
Sbjct: 30 GSPQLEDRQPR-RPLPRLRRAPPPAPALG 57
>gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo
sapiens]
Length = 102
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 GTPRGQEQGPHYRPTPRLPHRPFPAAALG 92
G+P+ +++ P RP PRL P PA ALG
Sbjct: 30 GSPQLEDRQPR-RPLPRLRRAPPPAPALG 57
>gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo
sapiens]
Length = 102
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 GTPRGQEQGPHYRPTPRLPHRPFPAAALG 92
G+P+ +++ P RP PRL P PA ALG
Sbjct: 30 GSPQLEDRQPR-RPLPRLRRAPPPAPALG 57
>gi|214831495 hypothetical protein LOC285679 [Homo sapiens]
Length = 277
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 54 RRALRRLAECGT----PRGQEQGPHYRPTPRLPHRP 85
++ L++L+ G+ PR GP Y+P P HRP
Sbjct: 113 KKCLKKLSREGSSHHLPRQVRPGPVYKPAPARNHRP 148
>gi|239755468 PREDICTED: MAS-related GPR, member G [Homo sapiens]
Length = 289
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2 WAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLA 61
W++ L N+L+ PL + L+ V+ ++ LGR+ G + RRAL A
Sbjct: 218 WSLQPLL--NFLLPVFSPLATLLACVNSSSKPLIYSGLGRQPGKREPLRSVLRRALGEGA 275
Query: 62 ECGTPRGQ 69
E G RGQ
Sbjct: 276 ELGA-RGQ 282
>gi|239749963 PREDICTED: MAS-related GPR, member G [Homo sapiens]
Length = 289
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2 WAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLA 61
W++ L N+L+ PL + L+ V+ ++ LGR+ G + RRAL A
Sbjct: 218 WSLQPLL--NFLLPVFSPLATLLACVNSSSKPLIYSGLGRQPGKREPLRSVLRRALGEGA 275
Query: 62 ECGTPRGQ 69
E G RGQ
Sbjct: 276 ELGA-RGQ 282
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 60 LAECGT---PRGQEQGPHYRPTPRLPHRPFPAAALGAPC 95
L CG+ P G RP PR PH P P +PC
Sbjct: 242 LPSCGSHFSPVGSAAACEMRPDPRRPHLPLP----NSPC 276
>gi|239744271 PREDICTED: MAS-related GPR, member G [Homo sapiens]
Length = 289
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2 WAVSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLA 61
W++ L N+L+ PL + L+ V+ ++ LGR+ G + RRAL A
Sbjct: 218 WSLQPLL--NFLLPVFSPLATLLACVNSSSKPLIYSGLGRQPGKREPLRSVLRRALGEGA 275
Query: 62 ECGTPRGQ 69
E G RGQ
Sbjct: 276 ELGA-RGQ 282
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 54 RRALRRLAECGTP---RGQEQGPHYRPTPRLPHRP 85
R +R+ A+ T G+E GP R PR PH+P
Sbjct: 286 RHLVRKNAKGSTQSGREGREPGPTPRARPRAPHKP 320
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 64 GTPRGQEQGPHYRPTPRLPHRPFPAAA 90
G P +GP + P P PH+P PAA+
Sbjct: 20 GGPGAPHEGPLHAPPPPAPHQP-PAAS 45
>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 332
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 4 VSHLAATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLAEC 63
V H +++ PL+ L ++ E+D L + G + ++EG L R A
Sbjct: 45 VGHKELPGHVVAASQPLSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGL 104
Query: 64 GTPRGQEQGPHYRPTPRLPHRPFPAAALGA 93
GT + + P P L H+ A GA
Sbjct: 105 GTALLRPRQPETTTHPTL-HQEATAIGAGA 133
>gi|169168458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 353
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 55 RALRRLAECGT----PRGQEQGPHYRPTPRLPHRP 85
+ L++L+ G+ PR GP Y+P P HRP
Sbjct: 114 KRLKKLSREGSSHHLPRQVRPGPVYKPAPARNHRP 148
>gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo
sapiens]
Length = 277
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 55 RALRRLAECGT----PRGQEQGPHYRPTPRLPHRP 85
+ L++L+ G+ PR GP Y+P P HRP
Sbjct: 114 KRLKKLSREGSSHHLPRQVRPGPVYKPAPARNHRP 148
>gi|22547204 hairless protein isoform a [Homo sapiens]
Length = 1189
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 57 LRRLAECGTPRGQEQGPHYRPTPRLPHRPFPAAA 90
LR L G+P + QG P P+ P PFP A
Sbjct: 408 LRALKRAGSP--EVQGAMGSPAPKRPPDPFPGTA 439
>gi|22547207 hairless protein isoform b [Homo sapiens]
Length = 1134
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 57 LRRLAECGTPRGQEQGPHYRPTPRLPHRPFPAAA 90
LR L G+P + QG P P+ P PFP A
Sbjct: 408 LRALKRAGSP--EVQGAMGSPAPKRPPDPFPGTA 439
>gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens]
Length = 581
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 61 AECGTPRGQEQGPHYRPTPRLPHRPFPAAALGA 93
AE G PR G R P +P P PA ALGA
Sbjct: 48 AEPGPPRTPRPG---RREPVMPRPPVPANALGA 77
>gi|53832024 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, zeta isoform b [Homo sapiens]
Length = 618
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 65 TPRGQ--EQGPHYRPTPRLPHRPFP 87
+P+ Q EQ PHY P L + PFP
Sbjct: 190 SPQNQHVEQQPHYTHKPTLEYSPFP 214
>gi|13899229 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, zeta isoform a [Homo sapiens]
Length = 718
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 65 TPRGQ--EQGPHYRPTPRLPHRPFP 87
+P+ Q EQ PHY P L + PFP
Sbjct: 290 SPQNQHVEQQPHYTHKPTLEYSPFP 314
>gi|158634482 poly (ADP-ribose) polymerase family, member 3 isoform
b [Homo sapiens]
Length = 533
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 9 ATNYLITTRFPLTSSLSSVSLLESDILEIQLGREVGDSVNEGADCRRALRRLAECGTPRG 68
AT LIT F ++++L++ D+ ++ LG+ + G + AL + T G
Sbjct: 188 ATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGG 247
Query: 69 Q 69
Q
Sbjct: 248 Q 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,192,055
Number of Sequences: 37866
Number of extensions: 202103
Number of successful extensions: 876
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 62
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.