Search of human proteins with 239746835

Search of human proteins with 239746835

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746835 PREDICTED: hypothetical protein XP_002344235 [Homo
sapiens]
         (167 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752324 PREDICTED: hypothetical protein XP_002348199 [Homo ...   344   2e-95
gi|239746835 PREDICTED: hypothetical protein XP_002344235 [Homo ...   344   2e-95
gi|60097902 filaggrin [Homo sapiens]                                   34   0.067
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         33   0.087
gi|88703045 proline rich 11 [Homo sapiens]                             32   0.19 
gi|205277392 dynactin 1 isoform 3 [Homo sapiens]                       31   0.43 
gi|13259510 dynactin 1 isoform 1 [Homo sapiens]                        31   0.43 
gi|239755569 PREDICTED: hypothetical protein XP_002344623 [Homo ...    31   0.56 
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]            31   0.56 
gi|239750111 PREDICTED: hypothetical protein [Homo sapiens]            31   0.56 
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]            31   0.56 
gi|239744419 PREDICTED: hypothetical protein XP_002343139 [Homo ...    31   0.56 
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]            31   0.56 
gi|116812624 tau tubulin kinase 2 [Homo sapiens]                       30   0.74 
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]            30   0.96 
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ...    30   0.96 
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ...    30   0.96 
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ...    30   0.96 
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 30   0.96 
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    30   1.3  
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         29   1.6  
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        29   1.6  
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        29   1.6  
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         29   1.6  
gi|41322910 plectin 1 isoform 7 [Homo sapiens]                         29   1.6  
gi|41322916 plectin 1 isoform 6 [Homo sapiens]                         29   1.6  
gi|41322908 plectin 1 isoform 3 [Homo sapiens]                         29   1.6  
gi|41322912 plectin 1 isoform 2 [Homo sapiens]                         29   1.6  
gi|47607492 plectin 1 isoform 1 [Homo sapiens]                         29   1.6  
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    29   1.6  

>gi|239752324 PREDICTED: hypothetical protein XP_002348199 [Homo
           sapiens]
          Length = 167

 Score =  344 bits (883), Expect = 2e-95
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG 60
           MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG
Sbjct: 1   MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG 60

Query: 61  VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR 120
           VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR
Sbjct: 61  VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR 120

Query: 121 GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS 167
           GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS
Sbjct: 121 GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS 167


>gi|239746835 PREDICTED: hypothetical protein XP_002344235 [Homo
           sapiens]
          Length = 167

 Score =  344 bits (883), Expect = 2e-95
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG 60
           MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG
Sbjct: 1   MVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSG 60

Query: 61  VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR 120
           VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR
Sbjct: 61  VGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRR 120

Query: 121 GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS 167
           GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS
Sbjct: 121 GRLERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS 167


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 33.9 bits (76), Expect = 0.067
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 28   RGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGV--------GGSASRPKRAVTSSEARA 79
            R  Q G+   AGP+  R++   G  + +  DS           GSASR  R     ++R 
Sbjct: 3517 RHSQSGQGQSAGPRTSRNQ---GSSVSQDSDSQGHSEDSERWSGSASRNHRGSAQEQSRD 3573

Query: 80   CLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQ 139
                P         H  ++ S  ++G+     SS    +      R  +G R+   H   
Sbjct: 3574 GSRHPTSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQS 3633

Query: 140  ASSGDEVGLGLGE 152
            A S    G+G G+
Sbjct: 3634 ADSSRHSGIGHGQ 3646



 Score = 30.4 bits (67), Expect = 0.74
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 63   GSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRRGR 122
            GSASR        + R     P         H  ++ S  ++G+    TSS    +    
Sbjct: 2585 GSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAASSHE 2644

Query: 123  LERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDT-HRPWNQS 167
              R  +G R+   H   A S    G+G G+      D+ HR ++ S
Sbjct: 2645 QARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSGHRGYSGS 2690



 Score = 30.4 bits (67), Expect = 0.74
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 63   GSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRRGR 122
            GSASR        + R     P         H  ++ S  ++G+    TSS    +    
Sbjct: 2909 GSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAASSHE 2968

Query: 123  LERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDT-HRPWNQS 167
              R  +G R+   H   A S    G+G G+      D+ HR ++ S
Sbjct: 2969 QARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSGHRGYSGS 3014



 Score = 30.0 bits (66), Expect = 0.96
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 41  QELRSEQYLGVRIQKSRDSGV--------GGSASRPKRAVTSSEARACLARPCQLMALSV 92
           QE R+ +  G R+ + RDS           GSASR        ++R     P        
Sbjct: 285 QESRTRKRRGSRVSQDRDSEGHSEDSERHSGSASRNHHGSAWEQSRDGSRHPRSHDEDRA 344

Query: 93  RHCRASPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSGDEVGLGLGE 152
            H  ++ S  ++G+    TSS    +      R   G R+   H   A S      G G+
Sbjct: 345 SHGHSADSSRQSGTRHAETSSRGQTASSHEQARSSPGERHGSGHQQSADSSRHSATGRGQ 404



 Score = 27.7 bits (60), Expect = 4.8
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 63   GSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRRGR 122
            GSASR  R     ++R     P         H  ++    ++G+    TSS    +    
Sbjct: 3233 GSASRNHRGSVQEQSRHGSRHPRSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHE 3292

Query: 123  LERIHSGHRNLVSHSHQASSGDEVGLGLGELRRRGTDTHRPWNQS 167
              R   G R+   H   A S    G+  G+      D+ R W  S
Sbjct: 3293 QARSSPGERHGSRHQQSADSSRHSGIPRGQASSAVRDS-RHWGSS 3336



 Score = 26.9 bits (58), Expect = 8.1
 Identities = 21/90 (23%), Positives = 33/90 (36%)

Query: 63   GSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATSSARMVSRRGR 122
            GSASR        ++R     P         H  ++ S  ++G+     SS    +    
Sbjct: 2261 GSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHE 2320

Query: 123  LERIHSGHRNLVSHSHQASSGDEVGLGLGE 152
              R  +G R+   H   A S    G+G G+
Sbjct: 2321 QARSSAGERHGSHHQQSADSSRHSGIGHGQ 2350


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 33.5 bits (75), Expect = 0.087
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 4   AQPQPPPCPPAHPSICLRCLGMLVRG----YQG-GKTPGAGPQELRSEQY 48
           +QPQPPP PP  P+  L+ L  ++ G    Y+G G      P  L + QY
Sbjct: 788 SQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQY 837


>gi|88703045 proline rich 11 [Homo sapiens]
          Length = 360

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 6   PQPPPCPPAHPSIC--LRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGVGG 63
           P PPP PP  P +   L     L +  Q G     GP ++  +  L V+++K++      
Sbjct: 188 PPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKTQ------ 241

Query: 64  SASRPKRAVTSSEARACLARPCQLMALSVR 93
           S    ++ + S +AR  L     L  ++++
Sbjct: 242 SLDEKRKLIPSPKARNPLVTVSDLQHVTLK 271


>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
          Length = 1253

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 88  MALSVRHCRA-SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSH--SHQASSGD 144
           MA S RH  + +PSGSR      A +SAR +    R+E I  GHR  V++  +   ++G 
Sbjct: 1   MAQSKRHVYSRTPSGSRMS----AEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGK 56

Query: 145 EVGLGLGELRRRGTDT 160
            VG+ L E + +   T
Sbjct: 57  WVGVILDEAKGKNDGT 72


>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
          Length = 1278

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 88  MALSVRHCRA-SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSH--SHQASSGD 144
           MA S RH  + +PSGSR      A +SAR +    R+E I  GHR  V++  +   ++G 
Sbjct: 1   MAQSKRHVYSRTPSGSRMS----AEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGK 56

Query: 145 EVGLGLGELRRRGTDT 160
            VG+ L E + +   T
Sbjct: 57  WVGVILDEAKGKNDGT 72


>gi|239755569 PREDICTED: hypothetical protein XP_002344623 [Homo
           sapiens]
          Length = 175

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 6   PQPPPCPPA--HPSI------CLRCLGM-LVRGYQGGKTPGAGPQELRSEQYLGVRIQKS 56
           P  PPCPPA  HP I       ++ LG  +V+         A   ELRS +    R    
Sbjct: 12  PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPR--AP 69

Query: 57  RDSGVGGSASRPKRAV-----TSSEARACLARPCQLMALSVRHC--RASPSG-SRTGSLC 108
           R  G+  S  R  + V      S++    LA P  L+AL +R+   RASP G +R G  C
Sbjct: 70  RVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPGYTC 129

Query: 109 RATSSARMVSR 119
           ++  +  M+ +
Sbjct: 130 QSQRAVGMMCK 140


>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 2   VMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGV 61
           ++  PQP  CP +   + L+ L  L R ++   TP A P++    +   +   K+     
Sbjct: 27  ILFPPQPTNCPSSK-CLVLQALHPLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNT 85

Query: 62  GGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCR 109
             ++  PK     S ++     P  L +         P+GS  GSL R
Sbjct: 86  PPTSGNPKHQRLPSHSQIVPPAPSPLPSPGSVPGYLPPTGSPDGSLPR 133


>gi|239750111 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 6   PQPPPCPPA--HPSI------CLRCLGM-LVRGYQGGKTPGAGPQELRSEQYLGVRIQKS 56
           P  PPCPPA  HP I       ++ LG  +V+         A   ELRS +    R    
Sbjct: 12  PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPR--AP 69

Query: 57  RDSGVGGSASRPKRAV-----TSSEARACLARPCQLMALSVRHC--RASPSG-SRTGSLC 108
           R  G+  S  R  + V      S++    LA P  L+AL +R+   RASP G +R G  C
Sbjct: 70  RVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPGYTC 129

Query: 109 RATSSARMVSR 119
           ++  +  M+ +
Sbjct: 130 QSQRAVGMMCK 140


>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 2   VMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGV 61
           ++  PQP  CP +   + L+ L  L R ++   TP A P++    +   +   K+     
Sbjct: 27  ILFPPQPTNCPSSK-CLVLQALHPLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNT 85

Query: 62  GGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCR 109
             ++  PK     S ++     P  L +         P+GS  GSL R
Sbjct: 86  PPTSGNPKHQRLPSHSQIVPPAPSPLPSPGSVPGYLPPTGSPDGSLPR 133


>gi|239744419 PREDICTED: hypothetical protein XP_002343139 [Homo
           sapiens]
          Length = 175

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 6   PQPPPCPPA--HPSI------CLRCLGM-LVRGYQGGKTPGAGPQELRSEQYLGVRIQKS 56
           P  PPCPPA  HP I       ++ LG  +V+         A   ELRS +    R    
Sbjct: 12  PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPR--AP 69

Query: 57  RDSGVGGSASRPKRAV-----TSSEARACLARPCQLMALSVRHC--RASPSG-SRTGSLC 108
           R  G+  S  R  + V      S++    LA P  L+AL +R+   RASP G +R G  C
Sbjct: 70  RVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPGYTC 129

Query: 109 RATSSARMVSR 119
           ++  +  M+ +
Sbjct: 130 QSQRAVGMMCK 140


>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 2   VMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGV 61
           ++  PQP  CP +   + L+ L  L R ++   TP A P++    +   +   K+     
Sbjct: 27  ILFPPQPTNCPSSK-CLVLQALHPLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNT 85

Query: 62  GGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCR 109
             ++  PK     S ++     P  L +         P+GS  GSL R
Sbjct: 86  PPTSGNPKHQRLPSHSQIVPPAPSPLPSPGSVPGYLPPTGSPDGSLPR 133


>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
          Length = 1244

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 15/111 (13%)

Query: 6    PQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGVGGSA 65
            P  P  PP  P +  R      R     +T  + P       +     Q+S    +G S 
Sbjct: 1134 PHNPKTPPKSPVVPRRSPSASPRSSSLPRTSSSSPSRAGRPHH----DQRSSSPHLGRSK 1189

Query: 66   SRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSR-TGSLCRATSSAR 115
            S P  + +SS  R+C             HC+ S +G + +GSL   ++S +
Sbjct: 1190 SPPSHSGSSSSRRSC----------QQEHCKPSKNGLKGSGSLHHHSASTK 1230


>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 449

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 57  RDSGVGGSASRPKRAVTSSEARA 79
           R  G GG ASRPK  V S  ARA
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARA 351


>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
           sapiens]
          Length = 402

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 57  RDSGVGGSASRPKRAVTSSEARA 79
           R  G GG ASRPK  V S  ARA
Sbjct: 282 RGKGAGGGASRPKEGVGSGRARA 304


>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
           sapiens]
          Length = 300

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 2   VMAQPQPPPCPPA---HPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRD 58
           VMA P PPP P A    P    R      R     +   A  +E R E+  G   + SR 
Sbjct: 173 VMALPAPPPSPAARQPEPPPMPRA-ARSARAATAARAAAAEREEAREERARGCS-EASRT 230

Query: 59  SGVGGSASRPKRAVTSSEARACLA 82
           S   G +  P   V   EA A  A
Sbjct: 231 SSDSGPSRAPAARVVGGEAAATAA 254


>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
           sapiens]
          Length = 449

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 57  RDSGVGGSASRPKRAVTSSEARA 79
           R  G GG ASRPK  V S  ARA
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARA 351


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 2   VMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGP 40
           +M  P PPP PP  PS  +  +GM V G      P A P
Sbjct: 595 MMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPP 633


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 10  PCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVR-IQKSRDSGVGGSASRP 68
           P  P  P +        VR     +TP A   E  S++ + V+ IQ   D+G   S ++P
Sbjct: 318 PKSPKSPKVTTHIPQTPVRPETPNRTPSATLSEKISKETIQVKQIQTPPDAGKLNSENQP 377

Query: 69  KRAVTSSE----------ARACLAR 83
           K+AV + +          ARAC  R
Sbjct: 378 KKAVVADKTIEASIDAVIARACAER 402


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 38/156 (24%), Positives = 53/156 (33%), Gaps = 22/156 (14%)

Query: 1   MVMAQPQPPPCPPAHPSICLRCLGMLVRGY--------QGGKTPGAGPQELRSEQYLGVR 52
           +    PQP P P    S  L   G    G          GG++   GP   R     G  
Sbjct: 111 LAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRG----GGT 166

Query: 53  IQKSRDSGVGGSASRPKRAVTSSEARACLARPCQLMALSVRHCRASPSGSRTGSLCRATS 112
           +             RP+R V ++E R   A P   +   V+    +P      +L +   
Sbjct: 167 VGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTP------ALTQGPQ 220

Query: 113 SARMVSRRGRLER----IHSGHRNLVSHSHQASSGD 144
           S R  ++ G   R      SG R L      AS+GD
Sbjct: 221 SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGD 256


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4481 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4526


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4485 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4530


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4481 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4526


>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
          Length = 4515

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4449 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4494


>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
          Length = 4684

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4618 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4663


>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
          Length = 4525

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4459 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4504


>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
          Length = 4533

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4467 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4512


>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
          Length = 4574

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 98   SPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSG 143
            S SGS  GS   + + +R  SRRG  +   SG     S S  +SSG
Sbjct: 4508 SGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSG 4553


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 32  GGKTPGAGPQELRSEQYLGVRIQKSRDSGVGGSASRPKRAVTSSEARACLARPCQLMALS 91
           GG  PG      R          +S  S    SASR   + +SS + +   R       S
Sbjct: 363 GGPAPGRNASARR----------RSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYR-S 411

Query: 92  VRHCRASPSGSRTGSLCRATSSARMVSRRGRLERIHSGHRNLVSHSHQASSGDEVGLG 149
            RH R     SR+ S  R+ S +R  SR     R HSG  +   H +  S     G G
Sbjct: 412 GRHAR-----SRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYG 464


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,889,983
Number of Sequences: 37866
Number of extensions: 375131
Number of successful extensions: 2904
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2820
Number of HSP's gapped (non-prelim): 126
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.