Guide to the Human Genome
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Name: LOC100292117 Sequence: fasta or formatted (175aa) NCBI GI: 239755569
Description:

PREDICTED: hypothetical protein XP_002344623

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         17           2
 C cysteine            4.6          8           2
 D aspartate           0.0          0           0
 E glutamate           3.4          6           1
 F phenylalanine       1.7          3           1
 G glycine             8.0         14           2
 H histidine           1.7          3           1
 I isoleucine          1.7          3           1
 K lysine              2.3          4           1
 L leucine            14.3         25           3
 M methionine          2.3          4           2
 N asparagine          0.6          1           1
 P proline            16.0         28           2
 Q glutamine           6.9         12           1
 R arginine            8.6         15           2
 S serine              4.0          7           1
 T threonine           2.3          4           1
 V valine              8.6         15           2
 W tryptophan          2.3          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344623 
LOC100288224          1.000   PREDICTED: hypothetical protein XP_002343139 
LOC100288224          0.991   PREDICTED: hypothetical protein 
ARID3C                0.035   AT rich interactive domain 3C (BRIGHT- like) 
ZNF628                0.026   zinc finger protein 628 
PVRL2                 0.026   poliovirus receptor related 2 isoform alpha precursor...
LOC100292292          0.023   PREDICTED: hypothetical protein 
LOC100291384          0.023   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.023   PREDICTED: hypothetical protein XP_002343004 
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
CMPK2                 0.023   UMP-CMP kinase 2 
LOC100288131          0.020   PREDICTED: hypothetical protein 
LOC100288131          0.020   PREDICTED: hypothetical protein XP_002343331 
ATF5                  0.020   activating transcription factor 5 
WIPF3                 0.020   WAS/WASL interacting protein family, member 3 [Homo...
LOC100294459          0.020   PREDICTED: similar to immunoglobulin lambda-like po...
CEBPA                 0.017   CCAAT/enhancer binding protein alpha 
DAAM2                 0.017   dishevelled associated activator of morphogenesis 2 ...
GNAS                  0.017   GNAS complex locus NESP55 
LOC100291489          0.017   PREDICTED: hypothetical protein XP_002348199 
LOC400553             0.017   PREDICTED: FLJ44904 protein 
LOC100288024          0.017   PREDICTED: hypothetical protein XP_002344235 
CYP2C19               0.014   cytochrome P450, family 2, subfamily C, polypeptide 1...
PGR                   0.014   progesterone receptor 
BRD3                  0.014   bromodomain containing protein 3 
RBM12                 0.014   RNA binding motif protein 12 
RBM12                 0.014   RNA binding motif protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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