Guide to the Human Genome
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Name: LOC100288024 Sequence: fasta or formatted (167aa) NCBI GI: 239746835
Description:

PREDICTED: hypothetical protein XP_002344235

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         13           1
 C cysteine            4.2          7           1
 D aspartate           1.8          3           1
 E glutamate           3.6          6           1
 F phenylalanine       0.0          0           0
 G glycine            11.4         19           2
 H histidine           4.2          7           1
 I isoleucine          1.8          3           1
 K lysine              1.8          3           1
 L leucine             8.4         14           1
 M methionine          3.0          5           1
 N asparagine          1.2          2           1
 P proline             7.8         13           3
 Q glutamine           5.4          9           1
 R arginine           13.8         23           3
 S serine             13.2         22           2
 T threonine           3.6          6           1
 V valine              5.4          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344235 
LOC100291489          1.000   PREDICTED: hypothetical protein XP_002348199 
FLG                   0.028   filaggrin 
KDM6B                 0.025   lysine (K)-specific demethylase 6B 
PRR11                 0.022   proline rich 11 
DCTN1                 0.019   dynactin 1 isoform 3 
DCTN1                 0.019   dynactin 1 isoform 1 
LOC100292117          0.019   PREDICTED: hypothetical protein XP_002344623 
LOC100130667          0.019   PREDICTED: hypothetical protein 
LOC100288224          0.019   PREDICTED: hypothetical protein 
LOC100130667          0.019   PREDICTED: hypothetical protein 
LOC100288224          0.019   PREDICTED: hypothetical protein XP_002343139 
LOC100130667          0.019   PREDICTED: hypothetical protein 
TTBK2                 0.016   tau tubulin kinase 2 
LOC100293604          0.016   PREDICTED: hypothetical protein 
LOC100289721          0.016   PREDICTED: hypothetical protein XP_002347280 
LOC100287250          0.016   PREDICTED: hypothetical protein XP_002344493 
LOC100287837          0.016   PREDICTED: hypothetical protein XP_002343157 
SF1                   0.016   splicing factor 1 isoform 1 
TAF3                  0.016   RNA polymerase II transcription factor TAFII140 [Ho...
BBC3                  0.013   BCL2 binding component 3 isoform 1 
PLEC1                 0.013   plectin 1 isoform 11 
PLEC1                 0.013   plectin 1 isoform 10 
PLEC1                 0.013   plectin 1 isoform 8 
PLEC1                 0.013   plectin 1 isoform 7 
PLEC1                 0.013   plectin 1 isoform 6 
PLEC1                 0.013   plectin 1 isoform 3 
PLEC1                 0.013   plectin 1 isoform 2 
PLEC1                 0.013   plectin 1 isoform 1 
SFRS16                0.013   splicing factor, arginine/serine-rich 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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