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Search of human proteins with 239746747
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746747 PREDICTED: hypothetical protein XP_002343823 [Homo
sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746747 PREDICTED: hypothetical protein XP_002343823 [Homo ... 533 e-152
gi|60460889 Myb protein P42POP [Homo sapiens] 38 0.008
gi|4885455 SH2B adaptor protein 3 [Homo sapiens] 35 0.086
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 34 0.11
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 34 0.11
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 34 0.11
gi|4506143 neurotrypsin precursor [Homo sapiens] 33 0.19
gi|14249622 ajuba isoform 1 [Homo sapiens] 33 0.25
gi|95089461 discs large homolog 5 [Homo sapiens] 33 0.33
gi|19924103 synapsin II isoform IIa [Homo sapiens] 33 0.33
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 33 0.33
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 33 0.33
gi|210032580 SET domain containing 1B [Homo sapiens] 33 0.33
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.42
gi|156416026 zinc finger protein 219 [Homo sapiens] 32 0.42
gi|148727370 immediate early response 5-like [Homo sapiens] 32 0.42
gi|156415998 zinc finger protein 219 [Homo sapiens] 32 0.42
gi|156415996 zinc finger protein 219 [Homo sapiens] 32 0.42
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 32 0.55
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 32 0.55
gi|33350928 disabled homolog 1 [Homo sapiens] 32 0.72
gi|18079216 CASK interacting protein 1 [Homo sapiens] 31 0.95
gi|50345997 E1A binding protein p300 [Homo sapiens] 31 0.95
gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens] 31 0.95
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 31 0.95
gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens] 31 0.95
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] 31 0.95
gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo ... 31 0.95
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ... 31 0.95
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 31 0.95
>gi|239746747 PREDICTED: hypothetical protein XP_002343823 [Homo
sapiens]
Length = 260
Score = 533 bits (1374), Expect = e-152
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSA 60
MGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSA
Sbjct: 1 MGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSA 60
Query: 61 AGQRPPAPPAHTLVLSFKSRDSMGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKGL 120
AGQRPPAPPAHTLVLSFKSRDSMGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKGL
Sbjct: 61 AGQRPPAPPAHTLVLSFKSRDSMGLFCRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKGL 120
Query: 121 QQVVIVGGQDHGAPVHQAEDRLQHHRTPDVLLQVVKHLHQAVLEEAGLGIACALQKGDIF 180
QQVVIVGGQDHGAPVHQAEDRLQHHRTPDVLLQVVKHLHQAVLEEAGLGIACALQKGDIF
Sbjct: 121 QQVVIVGGQDHGAPVHQAEDRLQHHRTPDVLLQVVKHLHQAVLEEAGLGIACALQKGDIF 180
Query: 181 RIRSWATTNRSRSFVTFLRNSATSPGCSTSSCSAASMTASMQLLHEQRAGIPGATAALTP 240
RIRSWATTNRSRSFVTFLRNSATSPGCSTSSCSAASMTASMQLLHEQRAGIPGATAALTP
Sbjct: 181 RIRSWATTNRSRSFVTFLRNSATSPGCSTSSCSAASMTASMQLLHEQRAGIPGATAALTP 240
Query: 241 VLKNECAHSRETLDEVNEAA 260
VLKNECAHSRETLDEVNEAA
Sbjct: 241 VLKNECAHSRETLDEVNEAA 260
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 38.1 bits (87), Expect = 0.008
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 5 CRRPKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQR 64
C RPK +P P +Q+ L PPA LP P P+ PS P P
Sbjct: 194 CPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSPP--------- 244
Query: 65 PPAPPAHTLVLSFKSRD 81
PP P TL S S D
Sbjct: 245 PPPRPPPTLSASDPSLD 261
>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
Length = 575
Score = 34.7 bits (78), Expect = 0.086
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDSMGLFCRRPKA 92
PPAK P+P P P++PG P A S+ PP PP F R S+ RR A
Sbjct: 96 PPAKAEASPEPGPG--PAAPGLPKARSSEELAPPRPPGPCSFQHF--RRSLRHIFRRRSA 151
Query: 93 SRTPSPY 99
P+ +
Sbjct: 152 GELPAAH 158
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 25 QGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDS-- 82
+G+ + PA+ P PQP PWS P+ + ++ +R P T +L R S
Sbjct: 634 RGVSSPIAGPAQPPPWPQPAPWSQPAFYDSSERIASRDERISVPAKRTGILQEAKRRSTT 693
Query: 83 --MGLFCRRPKASRTPSPYLGLVLQVQGLHG 111
M F + PK S P L L+ +G G
Sbjct: 694 KPMFTF-KEPKVSPNPE-LLSLLQNSEGKRG 722
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 25 QGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDS-- 82
+G+ + PA+ P PQP PWS P+ + ++ +R P T +L R S
Sbjct: 634 RGVSSPIAGPAQPPPWPQPAPWSQPAFYDSSERIASRDERISVPAKRTGILQEAKRRSTT 693
Query: 83 --MGLFCRRPKASRTPSPYLGLVLQVQGLHG 111
M F + PK S P L L+ +G G
Sbjct: 694 KPMFTF-KEPKVSPNPE-LLSLLQNSEGKRG 722
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 25 QGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDS-- 82
+G+ + PA+ P PQP PWS P+ + ++ +R P T +L R S
Sbjct: 634 RGVSSPIAGPAQPPPWPQPAPWSQPAFYDSSERIASRDERISVPAKRTGILQEAKRRSTT 693
Query: 83 --MGLFCRRPKASRTPSPYLGLVLQVQGLHG 111
M F + PK S P L L+ +G G
Sbjct: 694 KPMFTF-KEPKVSPNPE-LLSLLQNSEGKRG 722
>gi|4506143 neurotrypsin precursor [Homo sapiens]
Length = 875
Score = 33.5 bits (75), Expect = 0.19
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 6 RRPKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPH-PQPIPWSCPSSPGTPWA------- 57
+RP +R P P + L P A H P+P PW CP+ G PW
Sbjct: 51 QRPPTTRPPPPLPRFPRPPRALPAQ-RPHALQAGHTPRPHPWGCPA--GEPWVSVTDFGA 107
Query: 58 -CSAAGQRPP----APPAHTLVLSFKSRDSMGLFCRRPKASRTPSPYLG 101
C + PP +PPA L R FCR P + P + G
Sbjct: 108 PCLRWAEVPPFLERSPPASWAQL----RGQRHNFCRSPDGAGRPWCFYG 152
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 33.1 bits (74), Expect = 0.25
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTP--------WACSAAGQRPPAPPAHTLVLSFKSRDSMG 84
PP + LP PQ +P P P + SA+ P+ P +L+L G
Sbjct: 94 PPTRALPLPQSLPPDFRLEPTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAG 153
Query: 85 LFCRRPKASRTPSPYLGLVLQVQGLHGLVL--------PPAKGLQQVVIVGGQDHGAP-V 135
RP ++RT G+ + HG L PP G GG P +
Sbjct: 154 --GSRPCSNRTS----GISMGYDQRHGSPLPAGPCLFGPPLAGAPAGYSPGGVPSAYPEL 207
Query: 136 HQAEDRLQHHRTPDVLLQVVKHLHQAVLEE----AGLGIACA 173
H A DRL R Q +H + L AG G+ A
Sbjct: 208 HAALDRLYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAA 249
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 32.7 bits (73), Expect = 0.33
Identities = 64/233 (27%), Positives = 89/233 (38%), Gaps = 38/233 (16%)
Query: 6 RRPKASRTPSPYLG-LVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQR 64
RRPK++ + P L +V+ Q L PA P+ W+ P SPG S+
Sbjct: 1111 RRPKSAPSFRPKLAPVVIPAQFLEEQKCVPASGELSPELQEWA-PYSPGH----SSRHSN 1165
Query: 65 PPAPPAHTLVLSFKSRDSMGLFCRRPKASRTPSPYLGLVLQ--VQGLHGLVLPPAKGLQQ 122
PP P SR S+G R S TPS + +L+ + + + P
Sbjct: 1166 PPLYP---------SRPSVGTVPR----SLTPSTTVSSILRNPIYTVRSHRVGPCSSPPA 1212
Query: 123 VVIVGGQD-HGAPVHQAEDRLQ--HHRTPDVLLQVVKHLHQAVLEEAGLGIACALQ-KGD 178
G Q H + HQ L H D H ++ A LG + LQ K +
Sbjct: 1213 ARDAGPQGLHPSVQHQGRLSLDLSHRTCSDYSEMRATHGSNSLPSSARLGSSSNLQFKAE 1272
Query: 179 IFRIRSWATTNRSRSFVTFLRNSATSPGCST-----------SSCSAASMTAS 220
RI+ +T RS V R S + CST SSCS + +AS
Sbjct: 1273 --RIKIPSTPRYPRSVVGSERGSVSHSECSTPPQSPLNIDTLSSCSQSQTSAS 1323
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 32.7 bits (73), Expect = 0.33
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 8 PKASRTPS---PYLGLVLQVQGLH--GLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAG 62
P +S+TP P G Q QG+ G VLPP + P P +P PSS + + S+A
Sbjct: 443 PDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPPGPS-LP---PSSSSSSSSSSSAP 498
Query: 63 QRPPAPPAH 71
QRP P H
Sbjct: 499 QRPGGPTTH 507
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 32.7 bits (73), Expect = 0.33
Identities = 32/104 (30%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 29 GLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDSMGLFCR 88
G + PPA P P P+P SC P P G PP PP MG
Sbjct: 467 GAMAPPAP--PLPPPLPGSCEFLPPPPPPLPGLGCPPPPPPL---------LPGMGWGPP 515
Query: 89 RPKASRTPSPYLGLVLQVQGLHGLVLPPAKGLQQVVIVGGQDHG 132
P P P L PP G + VIV DHG
Sbjct: 516 PP-----PPPLLPCTCS---------PPVAGGMEEVIVAQVDHG 545
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 32.7 bits (73), Expect = 0.33
Identities = 32/104 (30%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 29 GLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDSMGLFCR 88
G + PPA P P P+P SC P P G PP PP MG
Sbjct: 467 GAMAPPAP--PLPPPLPGSCEFLPPPPPPLPGLGCPPPPPPL---------LPGMGWGPP 515
Query: 89 RPKASRTPSPYLGLVLQVQGLHGLVLPPAKGLQQVVIVGGQDHG 132
P P P L PP G + VIV DHG
Sbjct: 516 PP-----PPPLLPCTCS---------PPVAGGMEEVIVAQVDHG 545
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.7 bits (73), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Query: 30 LVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLV 74
L LPP P P P P PG P PP PPAH V
Sbjct: 679 LPLPPPPGFPPLPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAV 723
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 32.3 bits (72), Expect = 0.42
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 8 PKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPA 67
P + TP P Q L PP + LP P P + P P Q PP+
Sbjct: 584 PSSIATPPP--------QAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPS 635
Query: 68 PPA 70
PPA
Sbjct: 636 PPA 638
Score = 28.1 bits (61), Expect = 8.0
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 13 TPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPP---APP 69
TPSP L V L PP P P+S P+SP + + Q PP APP
Sbjct: 647 TPSPQAPNALAVHLLQAPFSPPPSP---PVQAPFSPPASPPVSPSATPPSQAPPSLAAPP 703
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.42
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPP 69
P + +P P+P P P TP AA + PPAPP
Sbjct: 238 PEPRSVPQPEPEPE--PEREATPTPAPAAPEEPPAPP 272
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 32.3 bits (72), Expect = 0.42
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 33 PPAKDLPHPQPIPWS-CPSSPGTPWACSA-AGQRPPA----PPA 70
P LP P P P + CP P P ACSA G PPA PPA
Sbjct: 182 PAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPA 225
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.42
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPP 69
P + +P P+P P P TP AA + PPAPP
Sbjct: 238 PEPRSVPQPEPEPE--PEREATPTPAPAAPEEPPAPP 272
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.42
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPP 69
P + +P P+P P P TP AA + PPAPP
Sbjct: 238 PEPRSVPQPEPEPE--PEREATPTPAPAAPEEPPAPP 272
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 32.0 bits (71), Expect = 0.55
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 26 GLHGLVLP-PAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTL 73
G+ G + P P+ P+P P CP PG P+ + + Q P PP T+
Sbjct: 166 GMPGGISPYPSGYPPNPSGYP-GCPYPPGGPYPATTSSQYPSQPPVTTV 213
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 32.0 bits (71), Expect = 0.55
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 33 PPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSRDSMGLFCRRPKA 92
PP P P P S G P AG PP P A V G PK
Sbjct: 153 PPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAA---VPGPGPGPKQGPGPGGPKG 209
Query: 93 SRT---PSPYLGLVLQVQGLHGLVLPPAKGLQQVVIVGGQDHGAPVHQAEDRLQHHRTP 148
+ P P G L G H PP +G + GG+ H P HQ QHH+ P
Sbjct: 210 GKMPGGPKPGGGPGLSTPGGH--PKPPHRGGGEP--RGGRQHHPPYHQ-----QHHQGP 259
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 31.6 bits (70), Expect = 0.72
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 21 VLQVQGLHGLVLPPAKDLPHPQPIPWSCPS-SPGT--PWACSAAGQRPPA 67
++Q Q + G P A+ +P QPI W P P T PW + AGQ PPA
Sbjct: 316 LVQQQMVMGAQPPVAQVMPGAQPIAWGQPGLFPATQQPWP-TVAGQFPPA 364
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 31.2 bits (69), Expect = 0.95
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 8 PKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPI---PWSCPSSPGTPWACSAAGQR 64
P S P P V+ + GL A P P P P + PGTP + A+ +
Sbjct: 1268 PPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAK 1327
Query: 65 PPAPPAHTL 73
PP+P A L
Sbjct: 1328 PPSPGAPAL 1336
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 31.2 bits (69), Expect = 0.95
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 8 PKASRTPSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWACSAAGQRPPA 67
P SRTP+P+ G PPA +P P P P + P P + A ++ P
Sbjct: 834 PVPSRTPTPH-----HTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQ-ALHPPPRQTPT 887
Query: 68 PPAHTL 73
PP L
Sbjct: 888 PPTTQL 893
>gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 890
Score = 31.2 bits (69), Expect = 0.95
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 14 PSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWAC---------SAAGQR 64
P P G +VQG+ L+L A P P+P+ PS G P++ SAA
Sbjct: 210 PEPQSG---RVQGMQPLLLMQA-----PHPVPFHMPSPMGLPYSTPLPPPVVMESAAAIA 261
Query: 65 PPAPPA 70
P PPA
Sbjct: 262 PQMPPA 267
>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.95
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 23 QVQGLHG-LVLPPAKD-LPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSR 80
++ G+ G L LP +D PQP+PW PG P C A+G R AP A + K+R
Sbjct: 133 RLSGVAGCLPLPRPRDGARSPQPLPWK----PGLPSLCVASGLR-TAPDASAPGRAAKTR 187
Query: 81 DS 82
S
Sbjct: 188 SS 189
>gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 993
Score = 31.2 bits (69), Expect = 0.95
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 14 PSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWAC---------SAAGQR 64
P P G +VQG+ L+L A P P+P+ PS G P++ SAA
Sbjct: 210 PEPQSG---RVQGMQPLLLMQA-----PHPVPFHMPSPMGLPYSTPLPPPVVMESAAAIA 261
Query: 65 PPAPPA 70
P PPA
Sbjct: 262 PQMPPA 267
>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.95
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 23 QVQGLHG-LVLPPAKD-LPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSR 80
++ G+ G L LP +D PQP+PW PG P C A+G R AP A + K+R
Sbjct: 133 RLSGVAGCLPLPRPRDGARSPQPLPWK----PGLPSLCVASGLR-TAPDASAPGRAAKTR 187
Query: 81 DS 82
S
Sbjct: 188 SS 189
>gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo
sapiens]
Length = 993
Score = 31.2 bits (69), Expect = 0.95
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 14 PSPYLGLVLQVQGLHGLVLPPAKDLPHPQPIPWSCPSSPGTPWAC---------SAAGQR 64
P P G +VQG+ L+L A P P+P+ PS G P++ SAA
Sbjct: 210 PEPQSG---RVQGMQPLLLMQA-----PHPVPFHMPSPMGLPYSTPLPPPVVMESAAAIA 261
Query: 65 PPAPPA 70
P PPA
Sbjct: 262 PQMPPA 267
>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.95
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 23 QVQGLHG-LVLPPAKD-LPHPQPIPWSCPSSPGTPWACSAAGQRPPAPPAHTLVLSFKSR 80
++ G+ G L LP +D PQP+PW PG P C A+G R AP A + K+R
Sbjct: 133 RLSGVAGCLPLPRPRDGARSPQPLPWK----PGLPSLCVASGLR-TAPDASAPGRAAKTR 187
Query: 81 DS 82
S
Sbjct: 188 SS 189
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 31.2 bits (69), Expect = 0.95
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 32 LPPAKDLPHPQ---PIPWSCPSSPGTPWACSAAGQRPPA------PPAHTLVLSFKSRDS 82
+PP+ P PQ P+P SCP+ P G+R A PP+H + F+ R S
Sbjct: 402 VPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRS 461
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,843,712
Number of Sequences: 37866
Number of extensions: 637959
Number of successful extensions: 3900
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 3627
Number of HSP's gapped (non-prelim): 378
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.