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Search of human proteins with 239746741
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ... 647 0.0
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 608 e-174
gi|57864582 hornerin [Homo sapiens] 35 0.083
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.083
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 35 0.11
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 34 0.19
gi|194306623 immunoglobulin superfamily containing leucine-rich ... 34 0.19
gi|194306621 immunoglobulin superfamily containing leucine-rich ... 34 0.19
gi|39930401 immunoglobulin superfamily containing leucine-rich r... 34 0.19
gi|194306618 immunoglobulin superfamily containing leucine-rich ... 34 0.19
gi|153070260 myristoylated alanine-rich protein kinase C substra... 33 0.41
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 32 0.54
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|148727255 microtubule associated serine/threonine kinase fami... 32 0.54
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 31 1.6
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 31 1.6
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 31 1.6
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 31 1.6
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 31 1.6
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 31 1.6
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 31 1.6
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 30 2.0
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 30 2.0
gi|122937273 hypothetical protein LOC131149 [Homo sapiens] 30 2.0
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 30 2.7
gi|117320531 nuclear factor of kappa light polypeptide gene enha... 30 2.7
gi|117320540 nuclear factor of kappa light polypeptide gene enha... 30 2.7
gi|117320527 nuclear factor of kappa light polypeptide gene enha... 30 2.7
>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
sapiens]
Length = 306
Score = 647 bits (1669), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG
Sbjct: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
Query: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS
Sbjct: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
Query: 121 RKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHL 180
RKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHL
Sbjct: 121 RKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHL 180
Query: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEA 240
VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEA
Sbjct: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEA 240
Query: 241 RVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 300
RVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC
Sbjct: 241 RVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 300
Query: 301 SRHAGP 306
SRHAGP
Sbjct: 301 SRHAGP 306
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 608 bits (1567), Expect = e-174
Identities = 288/306 (94%), Positives = 293/306 (95%), Gaps = 1/306 (0%)
Query: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG
Sbjct: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
Query: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS
Sbjct: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
Query: 121 RKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHL 180
RKCSGWKRKGF QTASSFSTDDRLVMSVAYLRDAEALYFDV GCHMGHTQGDDVPKALHL
Sbjct: 121 RKCSGWKRKGFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQGDDVPKALHL 180
Query: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEA 240
VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCV E+
Sbjct: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVGGKEKP 240
Query: 241 RVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 300
++ + VPA+CPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC
Sbjct: 241 KIEI-SNVDGVPALCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 299
Query: 301 SRHAGP 306
SRHAGP
Sbjct: 300 SRHAGP 305
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 35.0 bits (79), Expect = 0.083
Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 12/183 (6%)
Query: 13 GHSTKLVGGWGHQKADDTRVAGPGLSG---GHGEAEVLQQGGEEEEELHAGQGLPEACTA 69
G S+ L +G + + +G G G GH + V H G +C++
Sbjct: 743 GSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHGQHGSGTSCSS 802
Query: 70 ACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRK 129
+CG E GS Q S G E GS Q ++ G + F+
Sbjct: 803 SCGH----YESGSG----QASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSSS 854
Query: 130 GFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQ-GDDVPKALHLVNHGSGVG 188
G ++S S+ S ++ + G GH Q G ++ HGSG G
Sbjct: 855 GQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSG 914
Query: 189 HVS 191
S
Sbjct: 915 RSS 917
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.0 bits (79), Expect = 0.083
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 23 GHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEA----CTAACGEGRGVS 78
G + ++ G G G GE E + G+ EEE G+G E GEG G
Sbjct: 891 GEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950
Query: 79 EPGSWVIPLQDSTEGDREPGSPQAPAE 105
E G W EG+ E G + E
Sbjct: 951 EEGEW--------EGEEEEGEGEGEEE 969
Score = 33.1 bits (74), Expect = 0.32
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 21 GWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEP 80
G G +K + V G + G GE E ++ GE EEE G+ GEG+G E
Sbjct: 803 GRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKG-EEE 861
Query: 81 GSWVIPLQDSTEGDREPGSPQAPAEKGRKASG 112
G ++ EG+ E + E + G
Sbjct: 862 GEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEG 893
Score = 30.0 bits (66), Expect = 2.7
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 20 GGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSE 79
G G + ++ G G G GE E + GE EEE G+G E GEG+G E
Sbjct: 871 GEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEE-GEGEGEEEE-----GEGKGEEE 924
Query: 80 PGSWV-IPLQDSTEGDREPGSPQAPAEKG 107
++ EG+ E G + E+G
Sbjct: 925 GEEGEGEGEEEEGEGEGEDGEGEGEEEEG 953
Score = 28.9 bits (63), Expect = 6.0
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 40 GHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGS 99
G GE E + GE EEE +G E GEG G E V + EG+ E G
Sbjct: 977 GEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGE-GE 1035
Query: 100 PQAPAEKGRK 109
+ E+G +
Sbjct: 1036 EEEGEEEGEE 1045
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 23 GHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGS 82
G + RVAG SG G ++ G L G+G+P GEGRG SEP
Sbjct: 467 GRLRGRPGRVAGA--SGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEP-- 522
Query: 83 WVIPLQDSTEGDREP 97
EG+ EP
Sbjct: 523 ---------EGEPEP 528
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 33.9 bits (76), Expect = 0.19
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 28 DDTRVAGP--GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVI 85
D AGP +G HG A L + + Q P AA +EP +
Sbjct: 13 DAAAAAGPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAAS-----TEPATRRR 67
Query: 86 --PLQDSTEGDREPGSPQAPAEKGRKASG 112
P + D EPGSP+AP K RKA G
Sbjct: 68 RRPRRRRRVNDAEPGSPEAPQGKRRKADG 96
>gi|194306623 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 190 VSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEARVVVLEAAP 249
+S ++HL H P+H L+ W + S P + V + P
Sbjct: 170 LSALSHLQLYHNPFHCGCGLV---WLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLP 226
Query: 250 AVPAVCPSAH---HPPAWSAKAAQRQAASSVTHCSSDFLPRPKLR 291
A+P PS H PP + R + V HC +D P P+L+
Sbjct: 227 ALPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQ 271
>gi|194306621 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 190 VSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEARVVVLEAAP 249
+S ++HL H P+H L+ W + S P + V + P
Sbjct: 170 LSALSHLQLYHNPFHCGCGLV---WLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLP 226
Query: 250 AVPAVCPSAH---HPPAWSAKAAQRQAASSVTHCSSDFLPRPKLR 291
A+P PS H PP + R + V HC +D P P+L+
Sbjct: 227 ALPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQ 271
>gi|39930401 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 190 VSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEARVVVLEAAP 249
+S ++HL H P+H L+ W + S P + V + P
Sbjct: 170 LSALSHLQLYHNPFHCGCGLV---WLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLP 226
Query: 250 AVPAVCPSAH---HPPAWSAKAAQRQAASSVTHCSSDFLPRPKLR 291
A+P PS H PP + R + V HC +D P P+L+
Sbjct: 227 ALPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQ 271
>gi|194306618 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 190 VSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEARVVVLEAAP 249
+S ++HL H P+H L+ W + S P + V + P
Sbjct: 170 LSALSHLQLYHNPFHCGCGLV---WLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLP 226
Query: 250 AVPAVCPSAH---HPPAWSAKAAQRQAASSVTHCSSDFLPRPKLR 291
A+P PS H PP + R + V HC +D P P+L+
Sbjct: 227 ALPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQ 271
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 32.7 bits (73), Expect = 0.41
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 42 GEAEVLQQGG-----EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDS--TEGD 94
G E LQ G ++EE AG G A GE + P + P++ EG+
Sbjct: 53 GAKEELQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGE 112
Query: 95 -REPGSPQAPAEKGRKASGFTKWPWA 119
EPGSP A + A+ T P A
Sbjct: 113 AAEPGSPTAAEGEAASAASSTSSPKA 138
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 WGHQKADDTRVAGPGLSGGHGEAEVLQQ---GGEEEEELHAGQGLPEACTAACGEGR-GV 77
W + AG G+ + E L + GGEE + AG G CG R GV
Sbjct: 42 WTAWSQQEQGAAGAGVRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGV 101
Query: 78 SE---PGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKGFFQT 134
+ PGS +PL + + S +PA GR + WA K S +RK + +
Sbjct: 102 PQTRAPGS-PLPLGSVPDPRCDTASLPSPAGGGRTSC------WAPGKRSRTRRKSWRKV 154
Query: 135 A 135
A
Sbjct: 155 A 155
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 WGHQKADDTRVAGPGLSGGHGEAEVLQQ---GGEEEEELHAGQGLPEACTAACGEGR-GV 77
W + AG G+ + E L + GGEE + AG G CG R GV
Sbjct: 42 WTAWSQQEQGAAGAGVRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGV 101
Query: 78 SE---PGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKGFFQT 134
+ PGS +PL + + S +PA GR + WA K S +RK + +
Sbjct: 102 PQTRAPGS-PLPLGSVPDPRCDTASLPSPAGGGRTSC------WAPGKRSRTRRKSWRKV 154
Query: 135 A 135
A
Sbjct: 155 A 155
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.3 bits (72), Expect = 0.54
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 36 GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR 95
GLS H E + G E G+G PEA G+G PG P + TE D+
Sbjct: 2201 GLSFVHSENRLK---GAERPAAGVGKGFPEA------RGKG---PG----PQKPPTEADK 2244
Query: 96 EPGSPQAPAEKGRKASGFTKWPWASRKCS 124
G ++P+ G+ + T P S CS
Sbjct: 2245 PNGMKRSPSATGQSSFRSTALPEKSLSCS 2273
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 1.6
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 52 EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSP---------QA 102
EEE E A P+ ++ RG P + P + ++ G PG P A
Sbjct: 69 EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA 128
Query: 103 PAEKGRKASGFTKWPW---------ASRKCS-GWKRKGFFQTASSFSTDDR 143
P+ + +WPW R C+ G +G Q A S ST R
Sbjct: 129 PSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPR 179
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 1.6
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 52 EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSP---------QA 102
EEE E A P+ ++ RG P + P + ++ G PG P A
Sbjct: 69 EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA 128
Query: 103 PAEKGRKASGFTKWPW---------ASRKCS-GWKRKGFFQTASSFSTDDR 143
P+ + +WPW R C+ G +G Q A S ST R
Sbjct: 129 PSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPR 179
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 9 LMWAGHST-KLVGGWGHQKADDTRVAGPGLS-GGHGEAEVLQQGGEEEEELHAGQGLPEA 66
L+ + HST +L G + D A G G G +E GGEEEEE + E
Sbjct: 1198 LLLSAHSTLQLARARGQEGPGDVDRAAQGERVKGVGASE----GGEEEEE---EEETEEV 1250
Query: 67 CTAACGEGRG----VSEPGSWV-------IPLQDSTEGDREP-GSPQAPAEKGRKASG 112
AA G GR + G W + + S EG R P GS + +EK + A G
Sbjct: 1251 AEAAGGSGRARWARGGQAGWWYQLMQSSQVYIDGSIEGSRFPRGSSNSSSEKKKGAGG 1308
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 9 LMWAGHST-KLVGGWGHQKADDTRVAGPGLS-GGHGEAEVLQQGGEEEEELHAGQGLPEA 66
L+ + HST +L G + D A G G G +E GGEEEEE + E
Sbjct: 1198 LLLSAHSTLQLARARGQEGPGDVDRAAQGERVKGVGASE----GGEEEEE---EEETEEV 1250
Query: 67 CTAACGEGRG----VSEPGSWV-------IPLQDSTEGDREP-GSPQAPAEKGRKASG 112
AA G GR + G W + + S EG R P GS + +EK + A G
Sbjct: 1251 AEAAGGSGRARWARGGQAGWWYQLMQSSQVYIDGSIEGSRFPRGSSNSSSEKKKGAGG 1308
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 30.8 bits (68), Expect = 1.6
Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 27/202 (13%)
Query: 68 TAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPA--------EKGRKASGFTK---- 115
+ A EG + PG +EGDR +P A E G S
Sbjct: 334 SVAAAEGAPAAPPG------HGESEGDRLGPAPSAAPCVDEALTWESGCVGSDLGPAAHP 387
Query: 116 -WPWASRKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDV 174
PWAS GW+R G F + ++ DR + E+L + C
Sbjct: 388 VQPWASLSPEGWQRGGPFWPQVTLNSQDRDEREGGH--PQESLPCTLAPCPWRSPASSPE 445
Query: 175 PKALHLVNHGSGVGHVSLVTHLWSPHLPYHVVDLL----LDTDWTDMRPHNGSAPRGHSP 230
P + + G G + SP L +H +L LD + + +G P
Sbjct: 446 PSSPESESRGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDASQSSLLETDGEQPSSLKK 505
Query: 231 SSCVQQPEEARVVVLE--AAPA 250
+ P+ V E A PA
Sbjct: 506 KEAGEAPKPGEEVKSEGTARPA 527
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 30.8 bits (68), Expect = 1.6
Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 35/130 (26%)
Query: 211 DTDWTDMRPHNGSA--PRGH---------------------------------SPSSCVQ 235
+T W+D RP G PRG S S
Sbjct: 151 ETPWSDQRPREGEGEPPRGQLQPSRPTRARGTCSVEDPLLVCQKEPGKPRMVKSVGSVGD 210
Query: 236 QPEEARVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDT 295
P E R V E+ AV A PS+ PP ++ + SV C+ L ++ T
Sbjct: 211 SPREPRRTVSESVIAVKASFPSSALPPRTGVALGRKLGSHSVASCAPQLLGDRRVDAGHT 270
Query: 296 EKRLCSRHAG 305
++ + S G
Sbjct: 271 DQPVPSGSVG 280
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 25 QKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWV 84
+ D + A PG GGH +A Q G E E AG G+ AACG SE
Sbjct: 459 EPGDSAKDASPG--GGHHQAGPGQGGEEGEAAGAAGDGV-----AACG---SYSEGHGKF 508
Query: 85 IPLQDSTEGDREPGSPQAPAEKG 107
+ + + PG+P AP E G
Sbjct: 509 LAAARNPAAEPSPGAP-APQELG 530
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 25 QKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWV 84
+ D + A PG GGH +A Q G E E AG G+ AACG SE
Sbjct: 459 EPGDSAKDASPG--GGHHQAGPGQGGEEGEAAGAAGDGV-----AACG---SYSEGHGKF 508
Query: 85 IPLQDSTEGDREPGSPQAPAEKG 107
+ + + PG+P AP E G
Sbjct: 509 LAAARNPAAEPSPGAP-APQELG 530
>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
Length = 477
Score = 30.4 bits (67), Expect = 2.0
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 25 QKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWV 84
+K D + PGL GG G GE+ E G+ + C GE G + G
Sbjct: 207 EKGDQGAMGSPGLHGGPGAK------GEKGEMGEKGEMGDKGCCGDSGERGGKGQKGEGG 260
Query: 85 IPLQDSTEGDRE----------PGSPQAPAEKGRK 109
+ + ++GD PG+ P KG K
Sbjct: 261 MKGEKGSKGDSGMEGKSGRNGLPGAKGDPGIKGEK 295
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 30.0 bits (66), Expect = 2.7
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 42 GEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR--EPGS 99
GE +++G E+E+E +G A + VS P S LQ+ DR E S
Sbjct: 116 GETPTIEEGEEDEDEASEAEG-----ARALTQPSPVSTPSSVQFFLQEDDSADRKAERTS 170
Query: 100 PQAPA 104
P +PA
Sbjct: 171 PSSPA 175
>gi|117320531 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform a [Homo sapiens]
Length = 900
Score = 30.0 bits (66), Expect = 2.7
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 36 GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR 95
G +GG+G A G L A C G G + +P +DS E
Sbjct: 362 GAAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCYPGGGGGAQMAATVPSRDSGEEAA 421
Query: 96 EPGSP--------QAPAEKGRKASGFTK--WPWASRKCSGWKRKGFFQTASSFSTDDRLV 145
EP +P QAP E ++A + + A R G A + R +
Sbjct: 422 EPSAPSRTPQCEPQAP-EMLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHL 480
Query: 146 MSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHLVNHGSGVGHVSLVTHLWSPHLPYHV 205
++ L+ ++ H Q + + +++++H +G V+L HL P H+
Sbjct: 481 LTAQDENGDTPLHLAII-----HGQTSVIEQIVYVIHHAQDLGVVNLTNHL--HQTPLHL 533
Query: 206 VDLLLDTDWTDMRPHNGSAPR---GHSPSSC-------VQQPEEARVVVLEAAPAVP 252
+ T G+ P H S+ PE R ++ APAVP
Sbjct: 534 AVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVP 590
>gi|117320540 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 30.0 bits (66), Expect = 2.7
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 36 GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR 95
G +GG+G A G L A C G G + +P +DS E
Sbjct: 362 GAAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCYPGGGGGAQMAATVPSRDSGEEAA 421
Query: 96 EPGSP--------QAPAEKGRKASGFTK--WPWASRKCSGWKRKGFFQTASSFSTDDRLV 145
EP +P QAP E ++A + + A R G A + R +
Sbjct: 422 EPSAPSRTPQCEPQAP-EMLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHL 480
Query: 146 MSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHLVNHGSGVGHVSLVTHLWSPHLPYHV 205
++ L+ ++ H Q + + +++++H +G V+L HL P H+
Sbjct: 481 LTAQDENGDTPLHLAII-----HGQTSVIEQIVYVIHHAQDLGVVNLTNHL--HQTPLHL 533
Query: 206 VDLLLDTDWTDMRPHNGSAPR---GHSPSSC-------VQQPEEARVVVLEAAPAVP 252
+ T G+ P H S+ PE R ++ APAVP
Sbjct: 534 AVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVP 590
>gi|117320527 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 30.0 bits (66), Expect = 2.7
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 36 GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR 95
G +GG+G A G L A C G G + +P +DS E
Sbjct: 362 GAAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCYPGGGGGAQMAATVPSRDSGEEAA 421
Query: 96 EPGSP--------QAPAEKGRKASGFTK--WPWASRKCSGWKRKGFFQTASSFSTDDRLV 145
EP +P QAP E ++A + + A R G A + R +
Sbjct: 422 EPSAPSRTPQCEPQAP-EMLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHL 480
Query: 146 MSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHLVNHGSGVGHVSLVTHLWSPHLPYHV 205
++ L+ ++ H Q + + +++++H +G V+L HL P H+
Sbjct: 481 LTAQDENGDTPLHLAII-----HGQTSVIEQIVYVIHHAQDLGVVNLTNHL--HQTPLHL 533
Query: 206 VDLLLDTDWTDMRPHNGSAPR---GHSPSSC-------VQQPEEARVVVLEAAPAVP 252
+ T G+ P H S+ PE R ++ APAVP
Sbjct: 534 AVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVP 590
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,831,057
Number of Sequences: 37866
Number of extensions: 802885
Number of successful extensions: 3190
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 3101
Number of HSP's gapped (non-prelim): 162
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.