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Search of human proteins with 239746287
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ... 597 e-171
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ... 597 e-171
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 378 e-105
gi|239757291 PREDICTED: hypothetical protein [Homo sapiens] 91 9e-19
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 38 0.012
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 38 0.012
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 38 0.012
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.035
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 36 0.046
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 36 0.046
gi|71040090 regulatory factor X, 5 [Homo sapiens] 35 0.059
gi|4557843 regulatory factor X, 5 [Homo sapiens] 35 0.059
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.10
gi|160333411 early B-cell factor 4 [Homo sapiens] 35 0.10
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 34 0.13
gi|26051204 calcium/calmodulin-dependent protein kinase II beta ... 34 0.13
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.17
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.17
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 34 0.17
gi|91208420 bassoon protein [Homo sapiens] 34 0.17
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 33 0.23
gi|56549694 enabled homolog isoform a [Homo sapiens] 33 0.29
gi|39930375 enabled homolog isoform b [Homo sapiens] 33 0.29
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 33 0.29
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 33 0.29
gi|30039694 zinc finger protein 598 [Homo sapiens] 33 0.29
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 33 0.29
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.39
gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo ... 33 0.39
>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
sapiens]
Length = 291
Score = 597 bits (1539), Expect = e-171
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI 60
MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI
Sbjct: 1 MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI 60
Query: 61 AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK 120
AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK
Sbjct: 61 AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK 120
Query: 121 VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP
Sbjct: 121 VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
Query: 181 AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG 240
AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG
Sbjct: 181 AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG 240
Query: 241 AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP
Sbjct: 241 AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
Length = 291
Score = 597 bits (1539), Expect = e-171
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI 60
MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI
Sbjct: 1 MTSRSRTPRTTSTADGSVTVTHTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYI 60
Query: 61 AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK 120
AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK
Sbjct: 61 AGAGAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEK 120
Query: 121 VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP
Sbjct: 121 VRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
Query: 181 AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG 240
AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG
Sbjct: 181 AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPG 240
Query: 241 AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP
Sbjct: 241 AGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 378 bits (970), Expect = e-105
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 113 GVLLSGEKVRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVP 172
GVLLSGEKVRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVP
Sbjct: 367 GVLLSGEKVRHTLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVP 426
Query: 173 VPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSRE 232
VPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSRE
Sbjct: 427 VPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSRE 486
Query: 233 QRGAGGPGAGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
QRGAGGPGAGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP
Sbjct: 487 QRGAGGPGAGVGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 545
Score = 82.8 bits (203), Expect = 3e-16
Identities = 42/46 (91%), Positives = 42/46 (91%)
Query: 64 GAGCQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHVL 109
G QLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLH L
Sbjct: 150 GYKLQLVLQQLLVEAIFRGVTAHQEQRQASAGSKGVTSNGWQLHGL 195
>gi|239757291 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 91.3 bits (225), Expect = 9e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 22 HTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYIAGAG 64
HTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYIAGAG
Sbjct: 83 HTSRNGGAAGTRRTELPEHSPGSSSQVPGAAAHSLRPYIAGAG 125
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 172 PVPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSR 231
PVP ++ + P +A A PA+ A PP P + S+ P W+ +SR
Sbjct: 324 PVPASVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPP------WMNSGPSESR 377
Query: 232 EQRG--AGGPGAGVGGGRSDVQP-RSHTQVKSGGPL-HTP 267
G GGPG GG S P S T G P+ H P
Sbjct: 378 PYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNP 417
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 172 PVPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSR 231
PVP ++ + P +A A PA+ A PP P + S+ P W+ +SR
Sbjct: 324 PVPASVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPP------WMNSGPSESR 377
Query: 232 EQRG--AGGPGAGVGGGRSDVQP-RSHTQVKSGGPL-HTP 267
G GGPG GG S P S T G P+ H P
Sbjct: 378 PYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNP 417
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 172 PVPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSR 231
PVP ++ + P +A A PA+ A PP P + S+ P W+ +SR
Sbjct: 324 PVPASVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPP------WMNSGPSESR 377
Query: 232 EQRG--AGGPGAGVGGGRSDVQP-RSHTQVKSGGPL-HTP 267
G GGPG GG S P S T G P+ H P
Sbjct: 378 PYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNP 417
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.035
Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 26/138 (18%)
Query: 160 PTEVVAVATAWVPVPVALAGPAAPRACGVA----EAAGPASFAVLPPCPGCLPWHSSQKP 215
PT AV +A P P P + GV +A GP PP P +P P
Sbjct: 151 PTPPPAVTSAPPGAP-----PPTPPSSGVPTTPPQAGGP------PPPPAAVPG-----P 194
Query: 216 GPRLRQWLWKLQPQSREQRGA----GGPGAGVGGGRSDVQPRSHTQVKSGGPLHTPWPQS 271
GP +Q P+ + G GGPG GG R + + G H P+ Q
Sbjct: 195 GPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQ- 253
Query: 272 SKHLRGRVGGGESARQAQ 289
+H +G GG R +
Sbjct: 254 -QHHQGPPPGGPGGRSEE 270
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.8 bits (81), Expect = 0.046
Identities = 50/159 (31%), Positives = 64/159 (40%), Gaps = 26/159 (16%)
Query: 155 LAEAEPT--EVVAVATAW-----VPVPVALAGPAAPRACGVAEA---AGPA-------SF 197
L +A P+ EVV A P P A G A P AC AE AGP +
Sbjct: 166 LGDASPSAPEVVGARAAVPRSFSAPYPTA-GGSAGPEACSSAERRARAGPFLTPSPLHAV 224
Query: 198 AVLPPCPGCLPWHSSQKPGPRLRQWLWKLQP--QSREQRGAGGPGAGVGGGRSDVQPRSH 255
A+ P P P S G R + + R +RGAG P GG +D PR
Sbjct: 225 AMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGG--ADGGPRRQ 282
Query: 256 TQVKSGGPLHTPWPQSSKHLR----GRVGGGESARQAQS 290
V+ P +P P S++ R RVGG ++ A S
Sbjct: 283 NSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALS 321
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 35.8 bits (81), Expect = 0.046
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 172 PVPVALAGPAAPRACGVAEAAGPA-SFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQS 230
P P GP + AGP A PP P + Q + WKL P+
Sbjct: 144 PAPSPAPGPPVKEEPALPSGAGPLPDRAPAPPPPAEGGYGDEQIYSASVTGLYWKLLPEQ 203
Query: 231 REQRGAGGPGAGVGGGR 247
GAG PGAG G R
Sbjct: 204 AAPPGAGDPGAGGCGRR 220
>gi|71040090 regulatory factor X, 5 [Homo sapiens]
Length = 616
Score = 35.4 bits (80), Expect = 0.059
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 27/229 (11%)
Query: 82 GVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEKVRHTLPSPGWPVGSPGI-PII 140
G A E++++ S +N Q++ L + LL R +P PV P + P +
Sbjct: 298 GPLARGERKKSVVESSAPGANNLQVNALVARLPLLLPRAPRSLIPPI--PVSPPILAPRL 355
Query: 141 AWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPA-----AP------------ 183
+ GA L V TL + P V + +P AL GP AP
Sbjct: 356 SSGA-LKVATLPLSSRAGAPPAAVPIINMILPTVPALPGPGPGPGRAPPGGLTQPRGTEN 414
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRL-RQWLWKLQPQSREQRGAGGPGAG 242
R G+ GP V + S Q P + +Q + ++ +RG +G
Sbjct: 415 REVGIGGDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSG 474
Query: 243 VGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
G R+ +S ++S PW G G G SA A+ P
Sbjct: 475 GSGERNSTPLKSAAAMESAQSSRLPW-----ETWGSGGEGNSAGGAERP 518
>gi|4557843 regulatory factor X, 5 [Homo sapiens]
Length = 616
Score = 35.4 bits (80), Expect = 0.059
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 27/229 (11%)
Query: 82 GVTAHQEQRQASAGSKGVTSNGWQLHVLTVQGVLLSGEKVRHTLPSPGWPVGSPGI-PII 140
G A E++++ S +N Q++ L + LL R +P PV P + P +
Sbjct: 298 GPLARGERKKSVVESSAPGANNLQVNALVARLPLLLPRAPRSLIPPI--PVSPPILAPRL 355
Query: 141 AWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPA-----AP------------ 183
+ GA L V TL + P V + +P AL GP AP
Sbjct: 356 SSGA-LKVATLPLSSRAGAPPAAVPIINMILPTVPALPGPGPGPGRAPPGGLTQPRGTEN 414
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRL-RQWLWKLQPQSREQRGAGGPGAG 242
R G+ GP V + S Q P + +Q + ++ +RG +G
Sbjct: 415 REVGIGGDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSG 474
Query: 243 VGGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRGRVGGGESARQAQSP 291
G R+ +S ++S PW G G G SA A+ P
Sbjct: 475 GSGERNSTPLKSAAAMESAQSSRLPW-----ETWGSGGEGNSAGGAERP 518
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 34.7 bits (78), Expect = 0.10
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 146 LAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAPRACGVAEAAGPASFAVLPPCPG 205
+A + V A PT V A A A VP P A A A ++ PA+ A PG
Sbjct: 1 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG 60
Query: 206 CLPWHS---SQKPGPRL 219
P + +Q P P L
Sbjct: 61 QTPASAQAPAQTPAPAL 77
>gi|160333411 early B-cell factor 4 [Homo sapiens]
Length = 598
Score = 34.7 bits (78), Expect = 0.10
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 119 EKVRHTLPS-PGWPVGSPGIPIIAWGAELAVGTLGV-------VLAEAEPTEVVAVATAW 170
++++ +P PG P P ++ A+LA GV +L A +T
Sbjct: 347 QRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQELLLKRAADVAEALYSTPR 406
Query: 171 VPVPVALAGPAAPRAC--GVAEAAGPASFAVLPPCPGCLPWH--SSQKPGPRLRQWLWKL 226
P P+A P+ P G+ + P + AV PG P + S PR +
Sbjct: 407 APGPLAPLAPSHPHPAVVGINAFSSPLAIAVGDATPGPEPGYARSCSSASPRG----FAP 462
Query: 227 QPQSREQRGAGGPGAGVGG 245
P S++ GG GAG+GG
Sbjct: 463 SPGSQQSGYGGGLGAGLGG 481
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 34.3 bits (77), Expect = 0.13
Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 125 LPSPGWPVGS-PGIPIIAW-GAELAV--GTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
L P +P S PG+P + G +L G++G E E E V P AG
Sbjct: 34 LSKPDFPGNSSPGLPSSSSPGRDLGAPAGSMGAASCEDEELEFKLVFGEEKEAPPLGAGG 93
Query: 181 A--------APRACGVAEAAGPASFAV---LPPCPGCLPWHSSQKPGPRLRQWLWKLQPQ 229
AP C +A P A +P P P S P P W+ QP
Sbjct: 94 LGEELDSEDAPPCCRLALGEPPPYGAAPIGIPRPPPPRPGMHSPPPRPAPSPGTWESQPA 153
Query: 230 SREQRGAGGPGA-GVGGGR 247
+ G G GA G GGGR
Sbjct: 154 RSVRLGGPGGGAGGAGGGR 172
>gi|26051204 calcium/calmodulin-dependent protein kinase II beta
isoform 1 [Homo sapiens]
Length = 666
Score = 34.3 bits (77), Expect = 0.13
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGV 243
R G EA GP PCP P+ P PR+ L + +RG+G P A
Sbjct: 421 RGSGAPEAEGPL------PCPSPAPFSPLPAPSPRISDIL------NSVRRGSGTPEA-- 466
Query: 244 GGGRSDVQPRSHTQVKSGGPLHTPWPQSSKHLRG-RVGGGESARQAQSP 291
G P GPL +P P+ S L R G G + SP
Sbjct: 467 -EGPLSAGPPPCLSPALLGPLSSPSPRISDILNSVRRGSGTPEAEGPSP 514
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.17
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 124 TLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAP 183
++P P P +P++A A V A P V +A A P P PA
Sbjct: 127 SVPVPAPASTPPPVPVLAPAP--APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPV 184
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQK 214
A A A PA P P P S+++
Sbjct: 185 AAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 215
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.17
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 124 TLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAP 183
++P P P +P++A A V A P V +A A P P PA
Sbjct: 127 SVPVPAPASTPPPVPVLAPAP--APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPV 184
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQK 214
A A A PA P P P S+++
Sbjct: 185 AAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 215
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 33.9 bits (76), Expect = 0.17
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 124 TLPSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAP 183
++P P P +P++A A V A P V +A A P P PA
Sbjct: 138 SVPVPAPASTPPPVPVLAPAP--APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPV 195
Query: 184 RACGVAEAAGPASFAVLPPCPGCLPWHSSQK 214
A A A PA P P P S+++
Sbjct: 196 AAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 226
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.9 bits (76), Expect = 0.17
Identities = 34/121 (28%), Positives = 40/121 (33%), Gaps = 28/121 (23%)
Query: 172 PVPVALAGPAAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQS- 230
P P A P+AP G AAG A +PP PG P PGP +L P+
Sbjct: 29 PGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGP---GPGPGPGPGSTSRRLDPKEP 85
Query: 231 ------------------------REQRGAGGPGAGVGGGRSDVQPRSHTQVKSGGPLHT 266
RE R G G G R +Q S TQ P +
Sbjct: 86 LGNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVS 145
Query: 267 P 267
P
Sbjct: 146 P 146
Score = 30.4 bits (67), Expect = 1.9
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 82 GVTAHQEQR------QASAGSKGVTSNGWQLHVLTVQGVLLSGEKVRHTLPSPGWPVGS- 134
G TA Q+ R Q SAGS G T NG+ H Q G T P+P +P G+
Sbjct: 3047 GPTAFQQPRFQPPAPQYSAGSGGPTQNGFPAH----QAPTYPGPS---TYPAPAFPPGAS 3099
Query: 135 ----PGIP 138
PG+P
Sbjct: 3100 YPAEPGLP 3107
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 33.5 bits (75), Expect = 0.23
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 24/100 (24%)
Query: 179 GPAAPRACGVAEAAGPASFAV------------LPPCPGCLPWHSS----QKPGPRLRQW 222
G P A AA PAS + LPP PW SS + P PR R+
Sbjct: 143 GRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRR 202
Query: 223 --------LWKLQPQSREQRGAGGPGAGVGGGRSDVQPRS 254
+L P G GG GAG G G RS
Sbjct: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRS 242
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 33.5 bits (75), Expect = 0.23
Identities = 50/176 (28%), Positives = 64/176 (36%), Gaps = 23/176 (13%)
Query: 125 LPSPGWP--VGSPGIPIIAW--GAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP 180
LP P P VG PG+P + G G G V P +P P ++ P
Sbjct: 96 LPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVP 155
Query: 181 AAPRACGVAEAAGPASFAVLPPCPGCLPWHSSQK-------PGPRLRQWLWKLQPQSREQ 233
P G A GP F PG +P + QK PG + L P +
Sbjct: 156 GKPGQQGPTGAPGPRGFPGEKGAPG-VPGMNGQKGEMGYGAPGRPGERGL----PGPQGP 210
Query: 234 RGAGGPGAGVG-GGRSDVQPRSHTQVKSG-----GPLHTPWPQSSKHLRGRVGGGE 283
G GP GVG G + V + + G GP+ P PQ RG G G+
Sbjct: 211 TGPSGP-PGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGK 265
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 33.1 bits (74), Expect = 0.29
Identities = 39/148 (26%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Query: 135 PGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAPRACGVAEAAGP 194
PG+ + AE G+VL P + VAL P P + GP
Sbjct: 289 PGLQAASQPAETP-SQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGP 347
Query: 195 ASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGR-SDVQPR 253
PP P +P P P L + L S + R G A + G + V
Sbjct: 348 PPPPPPPPLPNQVPPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRM 407
Query: 254 SHTQVKSGGPLHTPWPQSSKHLRGRVGG 281
T SGG SSK GR G
Sbjct: 408 EDTSFPSGGNAIGVNSASSKTDTGRGNG 435
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 33.1 bits (74), Expect = 0.29
Identities = 39/148 (26%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Query: 135 PGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGPAAPRACGVAEAAGP 194
PG+ + AE G+VL P + VAL P P + GP
Sbjct: 289 PGLQAASQPAETP-SQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGP 347
Query: 195 ASFAVLPPCPGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGR-SDVQPR 253
PP P +P P P L + L S + R G A + G + V
Sbjct: 348 PPPPPPPPLPNQVPPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRM 407
Query: 254 SHTQVKSGGPLHTPWPQSSKHLRGRVGG 281
T SGG SSK GR G
Sbjct: 408 EDTSFPSGGNAIGVNSASSKTDTGRGNG 435
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 33.1 bits (74), Expect = 0.29
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 172 PVPVALAGPAAPRA----CGVAEAAGPASFAVLPPCPGCLPWHSSQKPGPRL----RQWL 223
P + P PR+ C + A P S AV PPCP C S + PR R
Sbjct: 68 PSAQCVRSPGVPRSLGGLCRAPDPALPVSVAV-PPCPACRGPQSISRSRPRRAVRPRPGP 126
Query: 224 WKLQPQSREQRGAGGPGAG 242
W P R GP G
Sbjct: 127 WPAAPSRGPVRSCRGPRPG 145
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 33.1 bits (74), Expect = 0.29
Identities = 32/93 (34%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 178 AGPAAPRACGVAEAAGPASFAVLPPCPG-----CLPWHSSQKPGPRLRQWLWKLQPQSRE 232
A AA A A AA A+ A PP G CL HSSQ L +
Sbjct: 356 AASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGG 415
Query: 233 QRGAGGPG-----AGVGGGR----SDVQPRSHT 256
G GG G AG GGG S PRS +
Sbjct: 416 GGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSES 448
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 33.1 bits (74), Expect = 0.29
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 167 ATAWVPVPVALAGPAAPRACGVA---EAAGPASFAVLPPCPGCLP------WHSSQKPGP 217
+TA P PV LA P A A G + E PA + +P PG P W+SS
Sbjct: 457 STAATPGPVGLALPYAIPARGRSAFQEEDFPALVSSVPK-PGTAPTSLVSAWNSSSS-SK 514
Query: 218 RLRQWLWKLQPQSREQRGAGGP----GAGVGGGRSDVQPRSHTQVKSGGP 263
++ Q P S + G+G P G G GGR P + + + GGP
Sbjct: 515 KVAQ-----PPLSAQATGSGQPTRKAGKGSRGGRKGGPPFTQEEEEDGGP 559
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 33.1 bits (74), Expect = 0.29
Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 89 QRQASAGSKGVTSNGWQLHVLTVQGVLLSGEKVRHTLPSPGWPVGSPGIPIIAWGAELAV 148
QR+ S S G + + H++ + G VR PS G + G P++ W
Sbjct: 555 QRKRSEPSPGSSGGIMEQHLVQHDRDMARG--VRGRAPSTGAQLS--GKPVL-WEP---- 605
Query: 149 GTLGVVLAEAEPTEVVAVATAWV--PVPVALAGPAAPRACGVAEAAGPASFAVLPPCPGC 206
+ L A T VA+A P+P++ PA A +AG + ++P G
Sbjct: 606 -LVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPLVPVRAG- 663
Query: 207 LPWHSSQK-PGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGR 247
PW S+ + P P R L R Q GP G GG R
Sbjct: 664 -PWASTSRLPAPPARTLHASLSRAGRSQVSLLGPPPGGGGRR 704
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.7 bits (73), Expect = 0.39
Identities = 49/178 (27%), Positives = 57/178 (32%), Gaps = 43/178 (24%)
Query: 126 PSPGWPVGSPGIPIIAWGAELAVGTLGVVLAEAEPTEVVAVATAWVPVPVALAGP----- 180
P P P G G P G G A+ EP + A A P P AGP
Sbjct: 805 PGPPGPAGFAGPP----------GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 854
Query: 181 --AAPRACGVAEAAGPASFAVLPPCPGCL----PWHSSQKPGPRLRQWLWKLQPQSREQR 234
AP A G +AGP P G + P ++ PGP P +
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP----------PGPAGKE 904
Query: 235 GAGGP--GAGVGGGRSDVQP----------RSHTQVKSGGPLHTPWPQSSKHLRGRVG 280
G GP G G +V P S G TP PQ RG VG
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG 962
>gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo
sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.39
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 154 VLAEAEPTEVVAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPG 205
+L + P ++AVA A V + PAA + C GV +A +P CP
Sbjct: 11 MLTDYTPVILMAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC 67
Query: 206 CLP--WHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 252
P S+ PG ++ + +L+P S+ Q +GG R D P
Sbjct: 68 ICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,275,514
Number of Sequences: 37866
Number of extensions: 843492
Number of successful extensions: 4140
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 3800
Number of HSP's gapped (non-prelim): 481
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.