Guide to the Human Genome
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Name: LOC100129800 Sequence: fasta or formatted (442aa) NCBI GI: 239746243
Description:

PREDICTED: similar to zinc finger protein 181

Not currently referenced in the text

Other entries for this name:
alt prot {452aa} PREDICTED: similar to zinc finger protein 181
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         14           1
 C cysteine            5.4         24           2
 D aspartate           1.4          6           1
 E glutamate           8.8         39           2
 F phenylalanine       4.5         20           1
 G glycine             5.0         22           1
 H histidine           7.5         33           2
 I isoleucine          6.1         27           2
 K lysine              7.9         35           2
 L leucine             7.2         32           2
 M methionine          1.4          6           1
 N asparagine          3.2         14           2
 P proline             4.1         18           1
 Q glutamine           3.6         16           1
 R arginine            4.3         19           2
 S serine             11.3         50           2
 T threonine           6.3         28           2
 V valine              4.8         21           1
 W tryptophan          0.9          4           1
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 181 [Homo... 
LOC100129800          0.982   PREDICTED: similar to zinc finger protein 181 [Homo...
ZNF181                0.594   zinc finger protein 181 isoform 2 
ZNF181                0.594   zinc finger protein 181 isoform 1 
ZNF383                0.449   zinc finger protein 383 
ZNF302                0.449   zinc finger protein 302 
ZNF302                0.449   zinc finger protein 302 
ZNF570                0.419   zinc finger protein 570 
ZNF140                0.417   zinc finger protein 140 
ZNF780A               0.414   zinc finger protein 780A isoform a 
ZNF780A               0.407   zinc finger protein 780A isoform b 
ZNF780A               0.407   zinc finger protein 780A isoform b 
ZNF582                0.403   zinc finger protein 582 
ZNF420                0.399   zinc finger protein 420 
ZNF471                0.396   zinc finger protein 471 
ZNF829                0.396   zinc finger protein 829 
ZNF583                0.395   zinc finger protein 583 
ZNF583                0.395   zinc finger protein 583 
ZNF583                0.395   zinc finger protein 583 
ZNF283                0.393   zinc finger protein 283 
ZNF780B               0.393   zinc finger protein 780B 
ZNF184                0.392   zinc finger protein 184 
ZNF345                0.387   zinc finger protein 345 
ZNF135                0.385   zinc finger protein 135 
LOC647678             0.385   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.385   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.385   PREDICTED: hypothetical protein XP_002343697 
ZNF528                0.385   zinc finger protein 528 
ZNF167                0.385   zinc finger protein 167 isoform 1 
ZNF461                0.380   gonadotropin inducible transcription repressor 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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