Guide to the Human Genome
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Search of human proteins with 239746102

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo
sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo ...   398   e-111
gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo ...   398   e-111
gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]          397   e-111
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    44   6e-05
gi|119943102 CREB binding protein isoform b [Homo sapiens]             43   2e-04
gi|119943104 CREB binding protein isoform a [Homo sapiens]             43   2e-04
gi|92859670 solute carrier family 6 (neurotransmitter transporte...    42   4e-04
gi|153792110 HEG homolog 1 [Homo sapiens]                              39   0.002
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]              37   0.008
gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens]                 36   0.023
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi...    34   0.067
gi|91208420 bassoon protein [Homo sapiens]                             34   0.067
gi|83367077 mucin 16 [Homo sapiens]                                    34   0.087
gi|134276943 separase [Homo sapiens]                                   33   0.11 
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]          33   0.11 
gi|156416026 zinc finger protein 219 [Homo sapiens]                    33   0.11 
gi|156415998 zinc finger protein 219 [Homo sapiens]                    33   0.11 
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]            33   0.11 
gi|87298937 centrosomal protein 110kDa [Homo sapiens]                  33   0.11 
gi|156415996 zinc finger protein 219 [Homo sapiens]                    33   0.11 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      33   0.15 
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi...    33   0.15 
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    33   0.19 
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ...    33   0.19 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    33   0.19 
gi|194272140 dendrin [Homo sapiens]                                    33   0.19 
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi...    32   0.25 
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi...    32   0.25 
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi...    32   0.25 
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi...    32   0.25 

>gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo
           sapiens]
          Length = 192

 Score =  398 bits (1023), Expect = e-111
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
           MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60

Query: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120
           GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV
Sbjct: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120

Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
           AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180

Query: 181 ANPDEQQPQVAY 192
           ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192


>gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo
           sapiens]
          Length = 192

 Score =  398 bits (1023), Expect = e-111
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
           MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60

Query: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120
           GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV
Sbjct: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120

Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
           AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180

Query: 181 ANPDEQQPQVAY 192
           ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192


>gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
          Length = 192

 Score =  397 bits (1019), Expect = e-111
 Identities = 191/192 (99%), Positives = 191/192 (99%)

Query: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
           MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1   MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60

Query: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120
           GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLG 
Sbjct: 61  GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA 120

Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
           AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180

Query: 181 ANPDEQQPQVAY 192
           ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 37/117 (31%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 62  MHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTP-RRGSLGV 120
           + R P    P A         + PG P +PRA R    G L A P   P  P RR S   
Sbjct: 758 VRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRAS 817

Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQA----VGPSGARRPEAPGWFRKSDRSGRAGTG 173
              S+S  +    A G     RPA +    +GP+ A R  AP   R+   S  A  G
Sbjct: 818 RPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGG 874


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 11  SDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSST 70
           S G  ++G   P    G S   +   A    L  + P  ++   P  T S +H  P  ++
Sbjct: 764 SSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPAS 823

Query: 71  PIAHCESQRRGTTGPGM-PCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLT 129
             A   S +  TT PGM P  P A  + +  V  +  + P  TP  GS+  A  + S  T
Sbjct: 824 TAAGMPSLQH-TTPPGMTPPQPAAPTQPSTPVS-SSGQTPTPTP--GSVPSATQTQSTPT 879

Query: 130 FDAEAQGQVRRPRPAQAVGPSGARRPEA 157
             A AQ QV  P+P   V P     P++
Sbjct: 880 VQAAAQAQV-TPQPQTPVQPPSVATPQS 906


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 11  SDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSST 70
           S G  ++G   P    G S   +   A    L  + P  ++   P  T S +H  P  ++
Sbjct: 802 SSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPAS 861

Query: 71  PIAHCESQRRGTTGPGM-PCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLT 129
             A   S +  TT PGM P  P A  + +  V  +  + P  TP  GS+  A  + S  T
Sbjct: 862 TAAGMPSLQH-TTPPGMTPPQPAAPTQPSTPVS-SSGQTPTPTP--GSVPSATQTQSTPT 917

Query: 130 FDAEAQGQVRRPRPAQAVGPSGARRPEA 157
             A AQ QV  P+P   V P     P++
Sbjct: 918 VQAAAQAQV-TPQPQTPVQPPSVATPQS 944


>gi|92859670 solute carrier family 6 (neurotransmitter transporter,
           glycine), member 5 [Homo sapiens]
          Length = 797

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 85  PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDL-TFDAEAQG----QVR 139
           P  PCAPR    + +    APP  PPR PR  S G   F S+D    +AE  G    ++ 
Sbjct: 26  PDGPCAPRTSPEQELPAAAAPP--PPRVPRSASTGAQTFQSADARACEAERPGVGSCKLS 83

Query: 140 RPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTG 173
            PR AQA   +     EA G  + S   G +G G
Sbjct: 84  SPR-AQAASAALRDLREAQG-AQASPPPGSSGPG 115


>gi|153792110 HEG homolog 1 [Homo sapiens]
          Length = 1381

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 17/108 (15%)

Query: 101 VLVAPP-----RVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPR--PAQAVGPS--- 150
           +L+ PP     R PP +P R +L +A  + + L    E + +   P   P +  GP+   
Sbjct: 20  LLLLPPAAPGTRDPPPSPARRALSLAPLAGAGLELQLERRPEREPPPTPPRERRGPATPG 79

Query: 151 -GARRPEAPGWFRKSDRSGRAGTG-----AWSQWPQANPDEQQPQVAY 192
              R PE PG   +   SGRA  G     AW  WP++N +     + +
Sbjct: 80  PSYRAPE-PGAATQRGPSGRAPRGGSADAAWKHWPESNTEAHVENITF 126


>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
          Length = 1834

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 24/115 (20%)

Query: 63   HREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAV--------GVLVAPP-------- 106
            H EPLS  PI H   +R   TGP    +P  +  EA         G+L   P        
Sbjct: 1429 HMEPLSPIPIDHWNLER---TGPLSTSSPSRRMNEAADSRDCRSPGLLDTTPIRGSCTTQ 1485

Query: 107  -RVPPRTPRRGSLGVA--VFSSSDL--TFDAEAQGQVRRPRPAQAVGPSGARRPE 156
             ++  ++   GSLG +   F +S L   +D E Q     P PAQ     GA++PE
Sbjct: 1486 RKLQEKSSGAGSLGNSRPSFLNSALWDVWDGEEQRPPETPPPAQMPSAGGAQKPE 1540


>gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens]
          Length = 233

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 85  PGMPCAPRAQRREAVGVLVA--------PPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQG 136
           P  PCAP      A G L A        PP VP   P   +  V    S  L      +G
Sbjct: 60  PASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRG 119

Query: 137 QVR-RPRP----AQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQ 177
           +VR R  P      A GPS    P   GW R +  S R     W+Q
Sbjct: 120 RVRGRAAPYCVAEVAAGPSALPGPCRRGWLRDAVTSRRLQQRRWTQ 165


>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
           sapiens]
          Length = 547

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 8   PSPSDGLGALGTTY-----------PGVHRGQSMAGLRVPAFNAGL-RAITPSRAETQHP 55
           P P  G G  G              PG HR  S  GLR      G+ R I PSR     P
Sbjct: 257 PGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAP 316

Query: 56  ETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRR 115
           +       ++ L++ P        RG+  PG P  PR Q     G L   P        +
Sbjct: 317 D-------KKRLNNAP--------RGSAAPGPPRGPRLQ---GGGSLTLQPDYAKYATFK 358

Query: 116 GSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPS 150
            +   A    +  + +   +    RPRPA A  PS
Sbjct: 359 AAALKAAVPRARRSANRLPRPSGPRPRPAPARSPS 393


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 47   PSRAETQHPETTSSGMH---REPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLV 103
            PS A ++ P+T         + P  +   A  + Q + TT    P A +   +   G   
Sbjct: 3768 PSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPST 3827

Query: 104  AP---PRVPPRTPR-RGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG 159
            A    P  PPR  +  GS G A          A  QG+  + +PA   GP+G +    PG
Sbjct: 3828 ATGPQPAGPPRAEQTNGSKGTA---------KAPQQGRAPQAQPAPGPGPAGVKAGARPG 3878



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 49/182 (26%), Positives = 67/182 (36%), Gaps = 34/182 (18%)

Query: 2    QRGPLSPSPSDGL----GALGT-TYPGVHRGQSMAGLRVPAFNAG--LRAITPSRAETQH 54
            Q GP   +P   +    G LG  T+P  H          PA   G  +R + PS A  + 
Sbjct: 2130 QHGPGLSAPQSLVPLRPGLLGNPTFPEGHPSPGNLAQYGPAAGQGTAVRQLLPSTATVRA 2189

Query: 55   PETTSSGMHREPLSST-PIAHCESQRRGTTGPGMPCAPRAQ----RREAVGVLVAPP--- 106
             +         P+++T PI         TT P     P  +    R  A G + A P   
Sbjct: 2190 ADGMIYSTINTPIAATLPI---------TTQPASVLRPMVRGGMYRPYASGGITAVPLTS 2240

Query: 107  --RVPPRTPR--RGSLGV------AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPE 156
              RVP   PR   G  G+      + F  +     AE    + +P  A+A G  G  RPE
Sbjct: 2241 LTRVPMIAPRVPLGPTGLYRYPAPSRFPIASSVPPAEGPVYLGKPAAAKAPGAGGPSRPE 2300

Query: 157  AP 158
             P
Sbjct: 2301 MP 2302


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 7     SPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQH-PETTSSGMHRE 65
             SP P +   A+ TT         +  L VP+         P+ +ET + PETT++ +   
Sbjct: 11524 SPGP-EASSAVSTTTISPDMSDLVTSL-VPSSGTDTSTTFPTLSETPYEPETTATWLTHP 11581

Query: 66    PLSSTPIAHCE---SQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVP 109
               +ST ++      S R   T P M  +P    R  V     PP +P
Sbjct: 11582 AETSTTVSGTIPNFSHRGSDTAPSMVTSPGVDTRSGVPTTTIPPSIP 11628



 Score = 32.0 bits (71), Expect = 0.33
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 19/120 (15%)

Query: 6     LSPSPSDG-LGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
             L+PSP +    A   T+PG   G          F   +R +  S      P+T +S +  
Sbjct: 11649 LTPSPGEPETTASSATHPGTQTG----------FTVPIRTVPSSE-----PDTMASWVTH 11693

Query: 65    EPLSSTPIAHCESQRRGTT---GPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVA 121
              P +STP++   S    ++    P M  +PR +   AV   ++P      T +  S G A
Sbjct: 11694 PPQTSTPVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAA 11753


>gi|134276943 separase [Homo sapiens]
          Length = 2120

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 47   PSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPP 106
            PS+ + Q      SG  R+ L+S P+    + ++G  G G+PC P+   R    +  A P
Sbjct: 1307 PSKTQGQK----RSGRGRQKLASAPLRLNNTSQKGLEGRGLPCTPKPPDR----IRQAGP 1358

Query: 107  RVP 109
             VP
Sbjct: 1359 HVP 1361


>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
          Length = 494

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 45/176 (25%), Positives = 61/176 (34%), Gaps = 38/176 (21%)

Query: 5   PLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
           PL PS     G +GT         S A     + +A  +A+ PS A+ Q       G   
Sbjct: 269 PLFPSA----GQMGTPVTS----SSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDF 320

Query: 65  EPLSSTPIAHCESQRRGTTGPGMPCAP-----RAQRREAVGVLVAPPRV-----PPRTPR 114
           +PL+STP          TT P  P  P      A          A P       P     
Sbjct: 321 KPLNSTPAT--------TTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTT 372

Query: 115 RGSLGVAVFSSSDLTFDAEAQGQVRR-----PRPAQA------VGPSGARRPEAPG 159
             +    +    D++ + E + Q+ +     PRP QA      VGP G   P  PG
Sbjct: 373 TSATSKLIHPDEDISLE-ERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPG 427



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 85  PGMPCAPRAQRREAVGVLVAPPRV--------PPRT----PRRGSLGVAVFSSSDLTFDA 132
           PG+P   +AQ   A G+L  PP          PP T    P  G +G  V SSS  + ++
Sbjct: 232 PGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNS 291

Query: 133 E---AQGQVRRPRPAQA 146
           E   A  +   P  AQA
Sbjct: 292 ESLSASSKALFPSTAQA 308


>gi|156416026 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 92  RAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
           R  R +  G    PP  PP   +RGS   +    S             RP P+   GP  
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605

Query: 152 ARRPEAPGWFRKSDRSGRA 170
            R+P +PG   ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624


>gi|156415998 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 92  RAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
           R  R +  G    PP  PP   +RGS   +    S             RP P+   GP  
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605

Query: 152 ARRPEAPGWFRKSDRSGRA 170
            R+P +PG   ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624


>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
          Length = 478

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 45/176 (25%), Positives = 61/176 (34%), Gaps = 38/176 (21%)

Query: 5   PLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
           PL PS     G +GT         S A     + +A  +A+ PS A+ Q       G   
Sbjct: 253 PLFPSA----GQMGTPVTS----SSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDF 304

Query: 65  EPLSSTPIAHCESQRRGTTGPGMPCAP-----RAQRREAVGVLVAPPRV-----PPRTPR 114
           +PL+STP          TT P  P  P      A          A P       P     
Sbjct: 305 KPLNSTPAT--------TTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTT 356

Query: 115 RGSLGVAVFSSSDLTFDAEAQGQVRR-----PRPAQA------VGPSGARRPEAPG 159
             +    +    D++ + E + Q+ +     PRP QA      VGP G   P  PG
Sbjct: 357 TSATSKLIHPDEDISLE-ERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPG 411



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 85  PGMPCAPRAQRREAVGVLVAPPRV--------PPRT----PRRGSLGVAVFSSSDLTFDA 132
           PG+P   +AQ   A G+L  PP          PP T    P  G +G  V SSS  + ++
Sbjct: 216 PGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNS 275

Query: 133 E---AQGQVRRPRPAQA 146
           E   A  +   P  AQA
Sbjct: 276 ESLSASSKALFPSTAQA 292


>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
          Length = 2325

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 109  PPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG-WFRKSDRS 167
            PP + +  S        S +     A   VR+PRP Q  G  G++ P A G W     RS
Sbjct: 1148 PPPSSKVSSHSSQATKDSGVGLKYSASTPVRKPRPGQQDGKEGSQPPPASGYWVYSPIRS 1207

Query: 168  G--------RAGTGAWSQWPQANPDEQQP 188
            G         A +G  SQ      D+++P
Sbjct: 1208 GLHKLFPSRDADSGGDSQEESELDDQEEP 1236


>gi|156415996 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 92  RAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
           R  R +  G    PP  PP   +RGS   +    S             RP P+   GP  
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605

Query: 152 ARRPEAPGWFRKSDRSGRA 170
            R+P +PG   ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 43/159 (27%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 5    PLSPSPSDGLGALGTT-YPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMH 63
            P +P P    G  G    PG    +   GL  P+   G +  + +  E   P      M 
Sbjct: 946  PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP----GPMG 1001

Query: 64   REPLSSTPIAHCESQRRGTTG----PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLG 119
               L+  P    ES R G  G    PG   +P A+          PP  P      G +G
Sbjct: 1002 PPGLAGPP---GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG 1058

Query: 120  VAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAP 158
             A  S          +G+     PA  VGP GAR P  P
Sbjct: 1059 PAGKSGD--------RGETGPAGPAGPVGPVGARGPAGP 1089


>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
           sapiens]
          Length = 492

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 50/199 (25%), Positives = 68/199 (34%), Gaps = 40/199 (20%)

Query: 8   PSPSDGLGALGTTY-----------PGVHRGQSMAGLRVPAFNAGL-RAITPSRAETQHP 55
           P P  G G  G              PG HR  S  GLR      G+ R I PSR     P
Sbjct: 257 PGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAP 316

Query: 56  ETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRR 115
           +       ++ L++ P        RG+  PG P  PR Q      + + P      T + 
Sbjct: 317 D-------KKRLNNAP--------RGSAAPGPPRGPRLQ--GGGSLTLQPDYAKYATFKA 359

Query: 116 GSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG------WFRKSDRSGR 169
            +L  A  +  D      A     R  PA+A  PS    P+ P       W      +  
Sbjct: 360 AALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPS----PDLPAPLDACPW-APPVYAPP 414

Query: 170 AGTGAWSQWPQANPDEQQP 188
           A  G ++ W  + P    P
Sbjct: 415 AAPGPYAAWTSSRPARPAP 433


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 57/220 (25%), Positives = 74/220 (33%), Gaps = 54/220 (24%)

Query: 2   QRGPLSPSPSDGL----GALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPET 57
           QR P   SP  G     G   T   G   G++   +  P   A     +PS A+   P +
Sbjct: 119 QRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPAD---PGS 175

Query: 58  TSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAP------------ 105
           TSS       +  P A   S+R        P AP A  R        P            
Sbjct: 176 TSSA------TRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGA 229

Query: 106 PRVPPRTPRR---GSLGVAVFSSSDLTFD-------AEAQGQVRRPRPAQAVGPSGARRP 155
           PR+  RT +R   GS   +V  S D+T         A+   QV    P +   P   R P
Sbjct: 230 PRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289

Query: 156 E--------------APGWFRK-----SDRSGRAGTGAWS 176
           +               P  F +       R GR GTG+WS
Sbjct: 290 DFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSWS 329


>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
           sapiens]
          Length = 459

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 57/220 (25%), Positives = 74/220 (33%), Gaps = 54/220 (24%)

Query: 2   QRGPLSPSPSDGL----GALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPET 57
           QR P   SP  G     G   T   G   G++   +  P   A     +PS A+   P +
Sbjct: 119 QRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPAD---PGS 175

Query: 58  TSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAP------------ 105
           TSS       +  P A   S+R        P AP A  R        P            
Sbjct: 176 TSSA------TRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGA 229

Query: 106 PRVPPRTPRR---GSLGVAVFSSSDLTFD-------AEAQGQVRRPRPAQAVGPSGARRP 155
           PR+  RT +R   GS   +V  S D+T         A+   QV    P +   P   R P
Sbjct: 230 PRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289

Query: 156 E--------------APGWFRK-----SDRSGRAGTGAWS 176
           +               P  F +       R GR GTG+WS
Sbjct: 290 DFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSWS 329


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 37/196 (18%)

Query: 7    SPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREP 66
            S SP  G    G + P    GQ    L+        +   PSR+    PE   +    + 
Sbjct: 3707 SGSPRPGTKTGGGSQPQPASGQ----LQSETATTPAKPSFPSRSPA--PERLPARAQAKS 3760

Query: 67   LSSTPIAHCESQRRGTTGPG-------------MPCAPRAQRREAVGVLVAPPRVPPRTP 113
             +  P    E    G+ GP              +P   R++   + G   + P  PPRTP
Sbjct: 3761 CTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTP 3820

Query: 114  RRGSLGVAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTG 173
            R+ +    V  +              +PRP     P   +R   PG  ++ DR G+A   
Sbjct: 3821 RKQATPSRVLPTK------PKPNSQNKPRP-----PPSEQRKAEPGHTQRKDRLGKA--- 3866

Query: 174  AWSQWPQANPDEQQPQ 189
                +PQ  P  + P+
Sbjct: 3867 ----FPQGRPLLRPPK 3878



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 77   SQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQG 136
            SQ  G+  PG      +Q + A G L +     P  P   S   A      L   A+A+ 
Sbjct: 3704 SQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPA---PERLPARAQAKS 3760

Query: 137  QVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQ 177
              + PR A   GP G+  P+  G      + G+    A S+
Sbjct: 3761 CTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSE 3801


>gi|194272140 dendrin [Homo sapiens]
          Length = 711

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 94  QRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQV-RRPRPAQA------ 146
           +RR+A G   +PP  P   PR     VA  +        E    V R PRP+        
Sbjct: 128 KRRKAGGARRSPPGRPRPEPRNAPR-VAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPG 186

Query: 147 ---VGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANP 183
               GP G RRP  P +       G AGT    +W +  P
Sbjct: 187 SAWAGPWGGRRPGPPSYEAHLLLRGSAGTAPRRRWDRPPP 226


>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 483

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 46/169 (27%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 25  HRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTG 84
           H GQ   G R PA   GL +  P             G H  P S    AH  +   G   
Sbjct: 210 HPGQ---GGRAPAQAGGLCSAAPG------------GGHPAP-SWVAFAHTGAWGTGLPA 253

Query: 85  PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPA 144
           P +PCAP A  + A  V  A    P   P + +       +  ++  A A+G      PA
Sbjct: 254 PHVPCAPGALPQGAF-VSQAARAAPALQPSQAA------PAEGISQPAPARGDFAYAAPA 306

Query: 145 QAVG----PSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQPQ 189
              G    P   R P  PG  R+     R G        Q  P +  PQ
Sbjct: 307 PPDGALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQ 355


>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 483

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 46/169 (27%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 25  HRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTG 84
           H GQ   G R PA   GL +  P             G H  P S    AH  +   G   
Sbjct: 210 HPGQ---GGRAPAQAGGLCSAAPG------------GGHPAP-SWVAFAHTGAWGTGLPA 253

Query: 85  PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPA 144
           P +PCAP A  + A  V  A    P   P + +       +  ++  A A+G      PA
Sbjct: 254 PHVPCAPGALPQGAF-VSQAARAAPALQPSQAA------PAEGISQPAPARGDFAYAAPA 306

Query: 145 QAVG----PSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQPQ 189
              G    P   R P  PG  R+     R G        Q  P +  PQ
Sbjct: 307 PPDGALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQ 355


>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 483

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 46/169 (27%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 25  HRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTG 84
           H GQ   G R PA   GL +  P             G H  P S    AH  +   G   
Sbjct: 210 HPGQ---GGRAPAQAGGLCSAAPG------------GGHPAP-SWVAFAHTGAWGTGLPA 253

Query: 85  PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPA 144
           P +PCAP A  + A  V  A    P   P + +       +  ++  A A+G      PA
Sbjct: 254 PHVPCAPGALPQGAF-VSQAARAAPALQPSQAA------PAEGISQPAPARGDFAYAAPA 306

Query: 145 QAVG----PSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQPQ 189
              G    P   R P  PG  R+     R G        Q  P +  PQ
Sbjct: 307 PPDGALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQ 355


>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 483

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 46/169 (27%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 25  HRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTG 84
           H GQ   G R PA   GL +  P             G H  P S    AH  +   G   
Sbjct: 210 HPGQ---GGRAPAQAGGLCSAAPG------------GGHPAP-SWVAFAHTGAWGTGLPA 253

Query: 85  PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRPA 144
           P +PCAP A  + A  V  A    P   P + +       +  ++  A A+G      PA
Sbjct: 254 PHVPCAPGALPQGAF-VSQAARAAPALQPSQAA------PAEGISQPAPARGDFAYAAPA 306

Query: 145 QAVG----PSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQPQ 189
              G    P   R P  PG  R+     R G        Q  P +  PQ
Sbjct: 307 PPDGALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQ 355


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,738,845
Number of Sequences: 37866
Number of extensions: 541895
Number of successful extensions: 2121
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 307
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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