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Search of human proteins with 239745977
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 356 7e-99
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 55 4e-08
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 49 2e-06
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 49 2e-06
gi|11641239 hypothetical protein LOC53838 [Homo sapiens] 48 5e-06
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 45 4e-05
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 43 1e-04
gi|41281612 zinc finger protein 828 [Homo sapiens] 42 2e-04
gi|112421108 capicua homolog [Homo sapiens] 42 2e-04
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 41 5e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 41 6e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 41 6e-04
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 41 6e-04
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 40 8e-04
gi|46852392 chromobox homolog 6 [Homo sapiens] 40 8e-04
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 40 8e-04
gi|242247193 SH2B adaptor protein 2 [Homo sapiens] 40 0.001
gi|154146199 sal-like 3 [Homo sapiens] 40 0.001
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 40 0.001
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 40 0.001
gi|91199550 CD68 antigen isoform B [Homo sapiens] 40 0.001
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 40 0.001
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 40 0.001
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 40 0.001
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 40 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni... 39 0.002
gi|7662162 ALEX2 protein [Homo sapiens] 39 0.002
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 39 0.002
gi|29540562 ALEX2 protein [Homo sapiens] 39 0.002
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 356 bits (913), Expect = 7e-99
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
MASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTT
Sbjct: 1 MASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP
Sbjct: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
Query: 121 ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAPLAHR 177
ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAPLAHR
Sbjct: 121 ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAPLAHR 177
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 54.7 bits (130), Expect = 4e-08
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 5 AAVLPSE----SSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
AA+ P++ SSS S+ + + + S S ++G++SS SLP AL +
Sbjct: 2522 AALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPS 2581
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
P AP + AVR G + P PA + S + S+SS S+ S
Sbjct: 2582 PTPAP-------KEAVREG-----RPPEPTPAKRK-RRSSSSSSSSSSSSSSSSSSSSSS 2628
Query: 121 ANCSSSGKDEAAASSTTPPSMGPAAPGP-------GPTPPPPG-RRERQRRS------NS 166
++ SSS +++SS++ S PA PGP P PPPG RR R R +S
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDS 2688
Query: 167 SSASVAPLAHR 177
S S +P+ R
Sbjct: 2689 RSLSYSPVERR 2699
Score = 35.8 bits (81), Expect = 0.020
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 1 MASEAAVLPSESSSWSAVAGGLGAQPAQS---GSWPAAGAASSRRM-KYSLPSDGLCALS 56
M SE A PS SS PAQ P+A + SR + + P G +LS
Sbjct: 2419 MTSERA--PSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLS 2476
Query: 57 TGTTPGGAPS-GAHSSCRRAVRPGL--SVAGKASAPRPASHLYSKLRPRLVSVTVSTSSP 113
+G S G H+ PG+ S G+ A A + + S+SS
Sbjct: 2477 SGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSS 2536
Query: 114 SAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPG---------PGPTPPP---------- 154
S+ S ++ SSS +++ S++ S G + P P PTP P
Sbjct: 2537 SSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPP 2596
Query: 155 ---PGRRERQRRSNSSSAS 170
P +R+R R S+SSS+S
Sbjct: 2597 EPTPAKRKR-RSSSSSSSS 2614
Score = 35.0 bits (79), Expect = 0.034
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 4/153 (2%)
Query: 2 ASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP 61
A+ AA + S+ A+ + +++ + AA +S R + + L T T P
Sbjct: 2234 AASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPTAP 2293
Query: 62 GGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPA 121
+GA + A LS+ G + P A++ S P+ + SA +P
Sbjct: 2294 AVNLAGARTPAALAA---LSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPV 2350
Query: 122 NCSSSGKDEA-AASSTTPPSMGPAAPGPGPTPP 153
N + S A A +S T M PA G T P
Sbjct: 2351 NIAGSRTAAALAPASLTSARMAPALSGANLTSP 2383
Score = 34.3 bits (77), Expect = 0.058
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 87 SAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAP 146
S P S S+L R S++ S+ P +P S SG + A S TPP ++
Sbjct: 761 SLSSPRSKAKSRLSLRR-SLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSS 819
Query: 147 GPGPTPPPPGRRERQRRSNSSSA 169
P PP + R+S+SSS+
Sbjct: 820 SP---PPKQKSKTPSRQSHSSSS 839
Score = 34.3 bits (77), Expect = 0.058
Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 24 AQPAQSGS--WPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLS 81
A AQSGS P A + R + S G + G +P G+ S SS + +
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRS-GSSSKGRGPSPEGS-SSTESSPEHPPKSRTA 1668
Query: 82 VAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP-ANCSSSGKDEAAASSTTPPS 140
G S+P P + S+ PR S S SSP + + + S S S TPP
Sbjct: 1669 RRGSRSSPEPKTK--SRTPPRRRS---SRSSPELTRKARLSRRSRSASSSPETRSRTPPR 1723
Query: 141 MGPAAPGPGPTPPPPGRRERQRRSNSS 167
+ P P R R+RRS SS
Sbjct: 1724 HRRSPSVSSPEPAEKSRSSRRRRSASS 1750
Score = 34.3 bits (77), Expect = 0.058
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 8 LPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSG 67
LP S S S+ + G G P G++S+ P + ++P
Sbjct: 1632 LPRRSRSGSS-SKGRGPSPE--------GSSSTESSPEHPPKSRTARRGSRSSPEPKTKS 1682
Query: 68 AHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSG 127
RR+ R + KA R + S R + SPS P PA S S
Sbjct: 1683 RTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSS 1742
Query: 128 KDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRS 164
+ +ASS P + + G P+P P G + + RS
Sbjct: 1743 RRRRSASS--PRTKTTSRRGRSPSPKPRGLQRSRSRS 1777
Score = 32.3 bits (72), Expect = 0.22
Identities = 37/133 (27%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 37 AASSRRMKYSLPSDGLCALSTGTTPG-GAPSGAHSSCR--RAVRPGLSVAGKASAPRPAS 93
A SRR S +D + T + A + H++ R+ P G+ AP
Sbjct: 254 APKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEP 313
Query: 94 HLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPP 153
S RP S +T PS SP K E +A T PS P GP PP
Sbjct: 314 GTTSTQRPS--SPETATKQPS----SPYEDKDKDKKEKSA---TRPSPSPERSSTGPEPP 364
Query: 154 PPGRRERQRRSNS 166
P +R S
Sbjct: 365 APTPLLAERHGGS 377
Score = 32.0 bits (71), Expect = 0.29
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 73 RRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVT---VSTSSPSAWKPSPAN-CSSSGK 128
RR G S SA PA+ +S R V++ +S S + P+P + C S G
Sbjct: 2076 RRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGM 2135
Query: 129 DEAAASSTTPPSM-----GPAAPGPGPTPP 153
E SS TP S+ G GPGP P
Sbjct: 2136 LEPLGSSRTPMSVLQQAGGSMMDGPGPRIP 2165
Score = 31.6 bits (70), Expect = 0.38
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 34 AAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPR--- 90
++ ++SS S S + S+ ++ + S + SS +PG K ++P+
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669
Query: 91 --------PASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMG 142
P + S R +S + + +PSP + SS + + S
Sbjct: 2670 PGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRS 2729
Query: 143 PAAPGPGPTPPPPGRRERQRRS 164
P+ TP P R R RS
Sbjct: 2730 PSHKRRRETPSPRPMRHRSSRS 2751
Score = 30.4 bits (67), Expect = 0.84
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 60 TPGGAPSGAHSSCRRAVRPGLSVAGKA---SAPRPASHLYSKLRPRLVSVT---VSTSSP 113
TP G S + SS V+P S ++ S+P + + LR R S + V + S
Sbjct: 1531 TPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSR 1590
Query: 114 SAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAP 173
+ + S + S KD+ A+ P + + P P P P R+ RS SSS P
Sbjct: 1591 LSPRRSRSGSSPEVKDKPRAA---PRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGP 1647
Score = 26.9 bits (58), Expect = 9.3
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 56 STGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSA 115
S TTP AH S SA +S S+ R R + T++ +
Sbjct: 248 SRSTTPAPKSRRAHRS--------------TSADSASSSDTSRSRSRSAAAKTHTTALAG 293
Query: 116 WKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSAS 170
PSPA+ D + T + P++P P ++ + SA+
Sbjct: 294 RSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSAT 348
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 49.3 bits (116), Expect = 2e-06
Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 12/178 (6%)
Query: 9 PSESSSWSAVA--GGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPS 66
PS S W + GG G + G P G+A S K S PS + + P
Sbjct: 302 PSGGSGWGSPQRNGGSGQRSGAHGGRP--GSAHSPPDKPSSPSPRVRDKAAAAAPTPPAR 359
Query: 67 GAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSS 126
G S R+ G+A+ + R R S + +P PA S
Sbjct: 360 GKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGS 419
Query: 127 GKDEAAASSTTPPSMGPAAPGPGPTPPPP------GRRERQR--RSNSSSASVAPLAH 176
+ + A S++ G APGPGP P G+R ++R R+ +S S +P AH
Sbjct: 420 SRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAH 477
Score = 26.9 bits (58), Expect = 9.3
Identities = 44/204 (21%), Positives = 65/204 (31%), Gaps = 31/204 (15%)
Query: 5 AAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPG-- 62
AA P+ + A +Q AAG A RR + + S G
Sbjct: 350 AAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRR 409
Query: 63 ----GAPSGAHSSCRRAVRPGLSVAGKAS---APRPASHLYSKLRPRLVSVTVSTSSPSA 115
P G+ S RA S +G+ + P P S + + P++
Sbjct: 410 RPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPAS 469
Query: 116 WKPSPANCSSSGKDEAAASSTTP------------PSMG--------PAAPGPGPTPPPP 155
PSP G E +SS +P PS P +P P+P P
Sbjct: 470 TSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKP 529
Query: 156 GRRER--QRRSNSSSASVAPLAHR 177
R++ + R+ S A R
Sbjct: 530 LSRDKDGEGRARHSEAEATRARRR 553
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 48.9 bits (115), Expect = 2e-06
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 2 ASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLP-SDGLCALSTGTT 60
AS +A +P+ S +A L + A + P A ++S + S+P S A+++ +
Sbjct: 1779 ASTSAPVPA-----STLAPVLASTSAPVPASPLAPVSASASVSASVPASTSAAAITSSSA 1833
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPS- 119
P AP+ + +++ AS P AS L S P S ++P P+
Sbjct: 1834 PASAPAPTPILASVSTPASVTILASASIPILASALASTSAPTPAPAASSPAAPVITAPTI 1893
Query: 120 PANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQ 161
PA+ ++ A AS++ P P P PP P + + Q
Sbjct: 1894 PASAPTASVPLAPASASAPAPAPTPVSAPNPAPPAPAQTQAQ 1935
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 59 TTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKP 118
+T P+ + + P V SAP PAS L V STS+P P
Sbjct: 1757 STSASVPASTSAPLPATLTP---VPASTSAPVPAS--------TLAPVLASTSAPVPASP 1805
Query: 119 -SPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPP 154
+P + S+S AS++ +AP P P P
Sbjct: 1806 LAPVSASASVSASVPASTSAAAITSSSAPASAPAPTP 1842
>gi|11641239 hypothetical protein LOC53838 [Homo sapiens]
Length = 449
Score = 47.8 bits (112), Expect = 5e-06
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 5 AAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGA 64
A+ P+ ++S + VA A S + AASS M +LP+ + STG TP
Sbjct: 129 ASSAPTTAASSTTVASIAPTTAASSMT-----AASSTPMTLALPAP--TSTSTGRTPSTT 181
Query: 65 PSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCS 124
+G H S A+ V ++ PR A+ R + V+ T +TSSP + +PSP+
Sbjct: 182 ATG-HPSLSTALA---QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHM 237
Query: 125 SSGKDEAAASSTTPPSMGPAAPGP 148
S A+S PP M P A GP
Sbjct: 238 PSD----TAASPVPP-MRPQAQGP 256
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 44.7 bits (104), Expect = 4e-05
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAW-KPS 119
PGG P GA + RR +P A P+ AS L + LRP +P+ + +PS
Sbjct: 252 PGGPPVGAEAWARRVPQP---AAPPRRPPQSASSLSASLRP--------PGAPATFLRPS 300
Query: 120 PANCSSSGKDEAAASSTTP------PSMGPAAPGPGPTPP--PPGRRERQRRSNSSSAS 170
P CSS G ++ P P+ GP PG T P PG + S AS
Sbjct: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQAS 359
Score = 33.5 bits (75), Expect = 0.099
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 18/92 (19%)
Query: 100 RPRLVSVTVSTSSPSAWKPS--PANCSSSGKDEAAASSTTPPSMGPAAPGPGP------- 150
RPRL + SP + P C SG EA + + P PAAP GP
Sbjct: 127 RPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPL 186
Query: 151 ---------TPPPPGRRERQRRSNSSSASVAP 173
TPPP RRS+ P
Sbjct: 187 FSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGP 218
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/152 (26%), Positives = 55/152 (36%), Gaps = 39/152 (25%)
Query: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGA 68
PS+ S ++ GG G P PS T +TPGG P
Sbjct: 487 PSQGPSTTSSGGGTGPHP---------------------PSGTTLRPPTSSTPGGPPGAE 525
Query: 69 HSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGK 128
+S+ + PG A P+P + +P V STS +P+ + ++
Sbjct: 526 NSTSHQPATPG---GDTAQTPKPGTS-----QPMPPGVGTSTSH----QPATPSGGTAQT 573
Query: 129 DEAAASSTTPPSMG------PAAPGPGPTPPP 154
E S PPSMG PA PG G P
Sbjct: 574 PEPGTSQPMPPSMGTSTSHQPATPGGGTAQTP 605
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 83 AGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMG 142
+GKA P+P P + W P P+ + K A P G
Sbjct: 702 SGKAPEPQPQGFDNQAFLP---------DHKANWAPVPSP-THDPKPAEAPMPAEPAPPG 751
Query: 143 PAAPGPGPTPPPPGR 157
PA+PG P PP R
Sbjct: 752 PASPGGAPEPPAAAR 766
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 42.4 bits (98), Expect = 2e-04
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 24/184 (13%)
Query: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGA 68
PS SS S V L A P G PAA S + + + P + S P
Sbjct: 240 PSASSPESPV---LAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAV 296
Query: 69 HSSCRR---AVRPGLSVAGKASAPRP----ASHLYSKLRPRLVSVTVSTS--------SP 113
RR AV PG G +PRP S +P + +VS SP
Sbjct: 297 SPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSP 356
Query: 114 SAWKPSPANCSSSGKDEAAASSTTPPS--MGPAAPGPGPTPPPPGRRERQRRSNSSSASV 171
WKP+P+ S+S K +SS +P S PA+P + PP R+ S +V
Sbjct: 357 GPWKPTPSVSSASWK----SSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSPEHWKAV 412
Query: 172 APLA 175
P++
Sbjct: 413 PPVS 416
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 38/142 (26%)
Query: 30 GSWPAAGAASSRRMKYS--LPSDGLCALST---------GTTPGGAPSGAHSSCRRAVRP 78
G +P+A A ++ + +Y+ PS L TP P GA A P
Sbjct: 1482 GFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAE-----APLP 1536
Query: 79 GLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP 138
G A+AP P T SP+ + S SG +AA P
Sbjct: 1537 VPPPTGTAAAPAP------------------TPSPAGGPDPTSPSSDSGTAQAAPPLPPP 1578
Query: 139 PSMGPAAPG----PGPTPPPPG 156
P GP PG P P+PPPPG
Sbjct: 1579 PESGPGQPGWEGAPQPSPPPPG 1600
Score = 32.0 bits (71), Expect = 0.29
Identities = 44/179 (24%), Positives = 61/179 (34%), Gaps = 44/179 (24%)
Query: 24 AQPAQSGSWPAAGAASSRRMKYSL-------PSD--------GLCALSTGTTPGGAPSGA 68
A PA + +P+A A S M YSL PS + ++ G+ GA
Sbjct: 1144 ATPAPTSPFPSATAGS---MTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRP 1200
Query: 69 HSSCRRAVRPG---------LSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPS 119
+ R+ + PG + G+ + P P P L T+ S P
Sbjct: 1201 GPAPRQPLEPGPVREPTAPESELEGQPTPPAP---------PPLPETWTPTARSSPPLPP 1251
Query: 120 PANCSSSGKDEAAASSTTP--------PSMGPAAPGPGPTPPPPGRRERQRRSNSSSAS 170
PA +S K +S P P G G PTPP P SS +S
Sbjct: 1252 PAEERTSAKGPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESS 1310
Score = 29.6 bits (65), Expect = 1.4
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 48 PSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVA-GKASAP--RPASHLYSKLRPRLV 104
PS G L T P R P S+A G +AP RPA+ + + + V
Sbjct: 621 PSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGAPAAPLSRPAATMVTNV----V 676
Query: 105 SVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGP 150
ST P A KP P + + A + T G PG P
Sbjct: 677 RPVSSTPVPIASKPFPTSGRAEASPNDTAGARTEMGTGSRVPGGSP 722
Score = 29.6 bits (65), Expect = 1.4
Identities = 54/191 (28%), Positives = 76/191 (39%), Gaps = 30/191 (15%)
Query: 4 EAAVLPSESS-SWSAVAGG----LGAQPA--QSGSWPAAGAASSRRMKY-SLPSDGLCAL 55
+ +LPS + ++ AGG LG PA Q+G+ + G SS + + SL G +
Sbjct: 994 QKVLLPSSTRITYVQSAGGHALPLGTSPASSQAGTVTSYGPTSSVALGFTSLGPSGPAFV 1053
Query: 56 STGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPR-PASHLYSKLRPRLVSVTVSTSSPS 114
+ G AP A + P + +AP P + P TSS
Sbjct: 1054 QPLLSAGQAPLLAPGQVGVSPVPSPQLPPACAAPGGPVITAFYSGSP------APTSSAP 1107
Query: 115 AWKPSPANCSSSGKDEAAASSTTPPSM-----GPAAPG---PGPTPPPPGRRERQRRSNS 166
+PS A S A+STTPP+ GP AP P PT P P +
Sbjct: 1108 LAQPSQAPPSLV---YTVATSTTPPAATILPKGPPAPATATPAPTSPFPS----ATAGSM 1160
Query: 167 SSASVAPLAHR 177
+ + VAP A R
Sbjct: 1161 TYSLVAPKAQR 1171
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 131 AAASSTTPPSMGPAAPGPGPTPPPPGRRE-RQRRSNSSSASVAP 173
A A PP G AA P PTP P G + S+S +A AP
Sbjct: 1531 AEAPLPVPPPTGTAA-APAPTPSPAGGPDPTSPSSDSGTAQAAP 1573
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 41.2 bits (95), Expect = 5e-04
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 62 GGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLR----PRLVSVTVSTSSPSAWK 117
GG P GA + G VA P P + P+L T S+SS SA
Sbjct: 8 GGGPGGAGGGSGQR---GSGVAQSPQQPPPQQQQQQPPQQPTPPKLAQATSSSSSTSAAA 64
Query: 118 PSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPP 154
S ++ S+S A +S + P P PGPG TP P
Sbjct: 65 ASSSSSSTSTSMAVAVASGSAP---PGGPGPGRTPAP 98
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 40.8 bits (94), Expect = 6e-04
Identities = 52/172 (30%), Positives = 63/172 (36%), Gaps = 32/172 (18%)
Query: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGA 68
P + +A+ GG Q S S P + + LP AL P P G
Sbjct: 221 PFPGNRGTALGGGSIRQSPLSSSSPFSN-------RPPLPPTPSRALDDKPPPPPPPVGN 273
Query: 69 HSSCRR-AVRPGLSVAGKA---SAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCS 124
S R AV P K S PRP++ + P PS P P S
Sbjct: 274 RPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP---------PPPSRPGPPPLPPS 324
Query: 125 SSGKDEA--------AASSTTPPSMGPAAPGPGPTP----PPPGRRERQRRS 164
SSG DE + SS+TPP P GP P P PPP R+ RS
Sbjct: 325 SSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRS 376
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 56 STGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSA 115
ST P PSG P S ++ P P + RP + S S P
Sbjct: 135 STSAKPFSPPSGPGRF------PVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVP 188
Query: 116 WKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPP-PGRR 158
P P S + + P GP P PGPTPPP PG R
Sbjct: 189 STPRPIQSSPHNR------GSPPVPGGPRQPSPGPTPPPFPGNR 226
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 89 PRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMG--PAAP 146
P P S + PRL +S SS + PSP SG S PP + P
Sbjct: 320 PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR---SGPLPPPPSERPPPPVRDPPGRS 376
Query: 147 GPGPTPPPPGRRERQRRS 164
GP P PPP R R+
Sbjct: 377 GPLPPPPPVSRNGSTSRA 394
Score = 32.0 bits (71), Expect = 0.29
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 131 AAASSTTPPSMGPAAPGPGPTPP-PPGRRERQR---RSNSSSASVAPL 174
+A+S PP P+ PGP P PP G E R R+ S S+S PL
Sbjct: 301 SASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPL 348
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 40.8 bits (94), Expect = 6e-04
Identities = 52/172 (30%), Positives = 63/172 (36%), Gaps = 32/172 (18%)
Query: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGA 68
P + +A+ GG Q S S P + + LP AL P P G
Sbjct: 221 PFPGNRGTALGGGSIRQSPLSSSSPFSN-------RPPLPPTPSRALDDKPPPPPPPVGN 273
Query: 69 HSSCRR-AVRPGLSVAGKA---SAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCS 124
S R AV P K S PRP++ + P PS P P S
Sbjct: 274 RPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP---------PPPSRPGPPPLPPS 324
Query: 125 SSGKDEA--------AASSTTPPSMGPAAPGPGPTP----PPPGRRERQRRS 164
SSG DE + SS+TPP P GP P P PPP R+ RS
Sbjct: 325 SSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRS 376
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 56 STGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSA 115
ST P PSG P S ++ P P + RP + S S P
Sbjct: 135 STSAKPFSPPSGPGRF------PVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVP 188
Query: 116 WKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPP-PGRR 158
P P S + + P GP P PGPTPPP PG R
Sbjct: 189 STPRPIQSSPHNR------GSPPVPGGPRQPSPGPTPPPFPGNR 226
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 89 PRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMG--PAAP 146
P P S + PRL +S SS + PSP SG S PP + P
Sbjct: 320 PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR---SGPLPPPPSERPPPPVRDPPGRS 376
Query: 147 GPGPTPPPPGRRERQRRS 164
GP P PPP R R+
Sbjct: 377 GPLPPPPPVSRNGSTSRA 394
Score = 32.0 bits (71), Expect = 0.29
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 131 AAASSTTPPSMGPAAPGPGPTPP-PPGRRERQR---RSNSSSASVAPL 174
+A+S PP P+ PGP P PP G E R R+ S S+S PL
Sbjct: 301 SASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPL 348
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 40.8 bits (94), Expect = 6e-04
Identities = 53/165 (32%), Positives = 68/165 (41%), Gaps = 47/165 (28%)
Query: 33 PAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPA 92
P A SS R++ + DG G G A +GA RP +SVAG +P P
Sbjct: 351 PPAAKCSSCRVRTASEGDG------GAAAGAAAAGA--------RP-VSVAGSPLSPGPV 395
Query: 93 ------SHLYS----------KLRP--------RLVSVTVSTSSPSAWKPSPANCSSSGK 128
SH S L P R +S+ V+ S P+A P + SSSG
Sbjct: 396 RAPLSRSHTLSGGCGGRGSKVALLPAGGALQHSRSMSMPVAHSPPAATSPGSLS-SSSGH 454
Query: 129 DEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAP 173
S + PP GP P P P PG+R S S+SAS +P
Sbjct: 455 ----GSGSYPPPPGPHPPLPHPLHHGPGQRP---SSGSASASGSP 492
Score = 30.4 bits (67), Expect = 0.84
Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 7 VLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPG-GAP 65
+L S +SS S ++ A SG+ G +S R + L S+ +P GAP
Sbjct: 938 LLASAASSSSLLSASSPASSLGSGT---PGTSSDSRQRSPLSDYMNLDFSSPKSPKPGAP 994
Query: 66 SGAH-SSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVT------VSTSSPSAWKP 118
SG S + P S PRP++ S L+P + +S A
Sbjct: 995 SGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPPPAPGELYRLPPASAVATAQ 1054
Query: 119 SPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
P SS D T + G AA P P PP
Sbjct: 1055 GPGAASSLSSDTGDNGDYTEMAFGVAATPPQPIAAPP 1091
Score = 28.1 bits (61), Expect = 4.2
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 60 TPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVS-VTVSTSSPSAWKP 118
+P P A ++ ++ S A + P + S+ R L + + SSP + KP
Sbjct: 932 SPPAPPLLASAASSSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLDFSSPKSPKP 991
Query: 119 SPANCSSSGKDEAAASSTTPPSMGPAAPGPG--------PTPPPPGRRERQRRSNSSSAS 170
+ G + S P P P P PPPP E R +S+ +
Sbjct: 992 GAPSGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPPPAPGELYRLPPASAVA 1051
Query: 171 VA 172
A
Sbjct: 1052 TA 1053
Score = 27.7 bits (60), Expect = 5.4
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 78 PGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTT 137
PG ++AG S + Y + P VS P A AAA++
Sbjct: 658 PGAALAGSGSGSCRSDD-YMPMSPASVSAPKQILQPRA---------------AAAAAAA 701
Query: 138 PPSMGPAAPGP----GPTPPPPG 156
PS GPA P P G T P G
Sbjct: 702 VPSAGPAGPAPTSAAGRTFPASG 724
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 40.4 bits (93), Expect = 8e-04
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 GLSVAGK-ASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTT 137
GLS A AS P P S L + + P S +ST++ S P PA+ S A +T
Sbjct: 906 GLSAAQPPASYPLPGSPLAAGVLPSQNSSVLSTAATS---PQPASAGIS-----QAQATV 957
Query: 138 PPSMGPAAPGPGPTPPP 154
PP++ PGP P+P P
Sbjct: 958 PPAVPTHTPGPAPSPSP 974
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 138 PPSMGPAAPGPGPTPPPPGRR 158
PP PA P GP PPPP R
Sbjct: 45 PPPPPPAGPSRGPLPPPPPPR 65
Score = 28.9 bits (63), Expect = 2.4
Identities = 34/129 (26%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 19 AGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRP 78
AG AQP S P + A+ LPS LST T S S + V P
Sbjct: 905 AGLSAAQPPASYPLPGSPLAAG-----VLPSQNSSVLSTAATSPQPASAGISQAQATVPP 959
Query: 79 GLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP 138
+ AP P+ P L T + S S S+ G A + P
Sbjct: 960 AVPTHTPGPAPSPS--------PALTHSTAQSDSTS-------YISAVGNTNANGTVVPP 1004
Query: 139 PSMGPAAPG 147
MG G
Sbjct: 1005 QQMGSGPCG 1013
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 40.4 bits (93), Expect = 8e-04
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 37 AASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLY 96
A S + + S P GL L+ P A S S C +P P S
Sbjct: 244 APSPGKAEASAPGPGLL-LAAPAAPYDARSSGSSGC--------------PSPTPQSSDP 288
Query: 97 SKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPG 156
P+L+ TVS S+PS W+ S + AA S PP + AA PT P P
Sbjct: 289 DDTPPKLLPETVSPSAPS-WREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPA 347
Query: 157 RRERQRRSNSSSASVAPLAH 176
+ + ++P ++
Sbjct: 348 GASSEPEAGDWRPEMSPCSN 367
Score = 27.3 bits (59), Expect = 7.1
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 52 LCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTS 111
L + G GGA GA + R V V GK+ S LR ++ +
Sbjct: 178 LKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSK-----KFSESVLRTQIRHMKFGAF 232
Query: 112 SPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAP----------GPGPTP 152
+ P+P S GK EA+A PAAP P PTP
Sbjct: 233 ALYKPPPAPLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTP 283
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 40.4 bits (93), Expect = 8e-04
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 23/175 (13%)
Query: 1 MASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
+ASE LPS + A PA + + A AA+ R + +P T +
Sbjct: 494 LASEE--LPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSP 551
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
P A + RR RP + + P P V+ S SSP A P P
Sbjct: 552 PETA-APVEDMARRTKRPA---PARPTMPPP-------------QVSGSRSSPPA-PPLP 593
Query: 121 ANCSSSGKDEAAASSTTPPSM-GPAAPGP-GPTPPPPGRRERQRRSNSSSASVAP 173
S G +A S+ P P P PTPP P RR+ RRS +S + +P
Sbjct: 594 PGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQ-SRRSPASPSPASP 647
Score = 33.5 bits (75), Expect = 0.099
Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 39 SSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSK 98
S R LPS + +T P AP+ A P ++A A+ R S +
Sbjct: 491 SDRLASEELPSTAVPTPATTPAPAPAPAPA---------PAPALASAATKERTES----E 537
Query: 99 LRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPG 156
+ PR S V+ S P P + + A + PP + + P P PPG
Sbjct: 538 VPPRPASPKVTRSPPETAAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPG 595
Score = 30.8 bits (68), Expect = 0.64
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 61 PG-GAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPS 119
PG G+P + RR V L P ++ + R + S +SP PS
Sbjct: 594 PGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPS 653
Query: 120 PANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPP--PPGRRERQRRSNSS 167
P + S+ + + A+ T P A PTPP PP R R S ++
Sbjct: 654 PVSLSNPAQVDLGAA--TAEGGAPEAISGVPTPPAIPPQPRPRSLASETN 701
>gi|242247193 SH2B adaptor protein 2 [Homo sapiens]
Length = 675
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 111 SSPSAWKPSP----------ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRER 160
+SP+ W SP A C + +AA +S++ S AA GP P P G+
Sbjct: 576 ASPACWSDSPGQHYFSSLAAAACPPASPSDAAGASSSSASSSSAASGPAPPRPVEGQLSA 635
Query: 161 QRRSNSSSASVAPLA 175
+ RSNS+ + +A
Sbjct: 636 RSRSNSAERLLEAVA 650
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 77 RPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPS----------------- 119
RP LS A SAP PA S+L P L ++ +S +P+A
Sbjct: 239 RPSLSPAAAPSAPGPAP---SQL-PGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSR 294
Query: 120 PANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAP 173
P + +S+ A S+ PS PA P P P P Q +S S+ ++AP
Sbjct: 295 PESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAP 348
Score = 35.0 bits (79), Expect = 0.034
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 48 PSDGLCALSTGTTPGGAPS---GAHSSCRRAVRPGLSVAGKASAP-----------RPAS 93
P L + + PG APS G + A P ++AG A RP S
Sbjct: 238 PRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPES 297
Query: 94 HLYSKLRPRLVSVTVSTSS-PSAWKPSPANCSSSGKDEAAASSTTPPSMGP-----AAPG 147
+ P S + S+ P+ P+PA S S++TPP++ P AAPG
Sbjct: 298 GASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPG 357
Query: 148 -PGPTPP 153
P P P
Sbjct: 358 LPSPLLP 364
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 40.0 bits (92), Expect = 0.001
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 68 AHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSG 127
AH S A P A SAP P P + T ++SS S+ S ++ SS+
Sbjct: 43 AHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSAS 102
Query: 128 KDEAAASSTTPPSMGPAAPGP 148
+++SS+ PP+ PA+ P
Sbjct: 103 SSSSSSSSSPPPASPPASSPP 123
Score = 31.2 bits (69), Expect = 0.49
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 RPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASST--TP-PSMGPAAPGPGPTP-PPP 155
+P+L ++ + P P S G EA S T TP P PA+P PGP P P P
Sbjct: 406 KPKLNTLKLYRLLPMRAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEP 465
Query: 156 G 156
G
Sbjct: 466 G 466
Score = 28.5 bits (62), Expect = 3.2
Identities = 43/168 (25%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 12 SSSWSAVAGGLGAQPAQS-----------GSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
SSS A G A+ A G P A+ + + L + G
Sbjct: 826 SSSGEAGGGSTAAEEASETASLQDPIISGGEEPPVVASGGSYVYPPVQEFPLALIGGGRE 885
Query: 61 PGGA--------PSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSS 112
PGG P GA R G+ A P P +Y P+L++ S
Sbjct: 886 PGGGRGKSGSEGPVGAGEGDRME---GIGAAKVTFYPEPYPLVYG---PQLLAAYPYNFS 939
Query: 113 PSAWKPSPANCSSSGKDEAAASSTTPPSMG-----PAAPGPGPTPPPP 155
A P N + A A P G AAP PTPPPP
Sbjct: 940 NLAALPVALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPPTPPPP 987
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 138 PPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVA 172
PP+ G AAP P T S+SSS+S +
Sbjct: 68 PPATGGAAPNPATTTAASSSSSSSSSSSSSSSSAS 102
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 40.0 bits (92), Expect = 0.001
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 68 AHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSG 127
AH S A P A SAP P P + T ++SS S+ S ++ SS+
Sbjct: 43 AHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSAS 102
Query: 128 KDEAAASSTTPPSMGPAAPGP 148
+++SS+ PP+ PA+ P
Sbjct: 103 SSSSSSSSSPPPASPPASSPP 123
Score = 31.2 bits (69), Expect = 0.49
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 RPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASST--TP-PSMGPAAPGPGPTP-PPP 155
+P+L ++ + P P S G EA S T TP P PA+P PGP P P P
Sbjct: 406 KPKLNTLKLYRLLPMRAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEP 465
Query: 156 G 156
G
Sbjct: 466 G 466
Score = 28.5 bits (62), Expect = 3.2
Identities = 43/168 (25%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 12 SSSWSAVAGGLGAQPAQS-----------GSWPAAGAASSRRMKYSLPSDGLCALSTGTT 60
SSS A G A+ A G P A+ + + L + G
Sbjct: 826 SSSGEAGGGSTAAEEASETASLQDPIISGGEEPPVVASGGSYVYPPVQEFPLALIGGGRE 885
Query: 61 PGGA--------PSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSS 112
PGG P GA R G+ A P P +Y P+L++ S
Sbjct: 886 PGGGRGKSGSEGPVGAGEGDRME---GIGAAKVTFYPEPYPLVYG---PQLLAAYPYNFS 939
Query: 113 PSAWKPSPANCSSSGKDEAAASSTTPPSMG-----PAAPGPGPTPPPP 155
A P N + A A P G AAP PTPPPP
Sbjct: 940 NLAALPVALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPPTPPPP 987
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 138 PPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVA 172
PP+ G AAP P T S+SSS+S +
Sbjct: 68 PPATGGAAPNPATTTAASSSSSSSSSSSSSSSSAS 102
>gi|91199550 CD68 antigen isoform B [Homo sapiens]
Length = 327
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 51 GLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASA---PRPASHLYSKLRPRLVSVT 107
GL A STGTT ++ R G + G +A P SH + P S T
Sbjct: 13 GLLAESTGTTSHRTTKSHKTTTHRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNS-T 71
Query: 108 VSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMG------PAAPGPGPTPPPPGR 157
++ PS SPA S S++T S G P P P P+P P +
Sbjct: 72 ATSQGPSTATHSPATTSHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSK 127
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 39.7 bits (91), Expect = 0.001
Identities = 49/182 (26%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 8 LPSESSSWSAVAGGLGAQPAQSG----SWPAAGAASSRRMKYSLPSDGLCALSTGTTPGG 63
LP S SA A GA +SG GAA+ R + P+ G+ L+ GT P
Sbjct: 268 LPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGV-GLARGTAPQP 326
Query: 64 APSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPAN- 122
A + A ++ RA G + + A R +H + R R + ++ W P P
Sbjct: 327 ASTWALAARPRA---GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQ 383
Query: 123 -------CSSSGKDEAAASSTTPPSMGPAAPGP----GPTPPPPGRRERQRRSNSSSASV 171
S + + P GPA GP G P PP R RR +
Sbjct: 384 RPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPR 443
Query: 172 AP 173
AP
Sbjct: 444 AP 445
Score = 29.6 bits (65), Expect = 1.4
Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 15/151 (9%)
Query: 20 GGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCAL-----STGTTPGGAPSG-AHSSCR 73
GG A G PA G +R S A T T+ A G AH +
Sbjct: 299 GGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQ 358
Query: 74 RAVRPGL----SVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKD 129
R R G S + +P P +L PR P +PS A + G
Sbjct: 359 RRTRDGAGNHASEPARVWSPPPRRQRPRRL-PRASLQEEPKRRPPCARPSGAGPAREGPA 417
Query: 130 EAAASSTTPPSMGPAA----PGPGPTPPPPG 156
+ TPP P P PGP P G
Sbjct: 418 AWPGGAPTPPHARPTGRRQDPEPGPRAPRGG 448
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 39.7 bits (91), Expect = 0.001
Identities = 49/182 (26%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 8 LPSESSSWSAVAGGLGAQPAQSG----SWPAAGAASSRRMKYSLPSDGLCALSTGTTPGG 63
LP S SA A GA +SG GAA+ R + P+ G+ L+ GT P
Sbjct: 268 LPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGV-GLARGTAPQP 326
Query: 64 APSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPAN- 122
A + A ++ RA G + + A R +H + R R + ++ W P P
Sbjct: 327 ASTWALAARPRA---GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQ 383
Query: 123 -------CSSSGKDEAAASSTTPPSMGPAAPGP----GPTPPPPGRRERQRRSNSSSASV 171
S + + P GPA GP G P PP R RR +
Sbjct: 384 RPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPR 443
Query: 172 AP 173
AP
Sbjct: 444 AP 445
Score = 29.6 bits (65), Expect = 1.4
Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 15/151 (9%)
Query: 20 GGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCAL-----STGTTPGGAPSG-AHSSCR 73
GG A G PA G +R S A T T+ A G AH +
Sbjct: 299 GGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQ 358
Query: 74 RAVRPGL----SVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKD 129
R R G S + +P P +L PR P +PS A + G
Sbjct: 359 RRTRDGAGNHASEPARVWSPPPRRQRPRRL-PRASLQEEPKRRPPCARPSGAGPAREGPA 417
Query: 130 EAAASSTTPPSMGPAA----PGPGPTPPPPG 156
+ TPP P P PGP P G
Sbjct: 418 AWPGGAPTPPHARPTGRRQDPEPGPRAPRGG 448
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 39.7 bits (91), Expect = 0.001
Identities = 45/154 (29%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGA 68
P S +WS G G+ S P+ G A S YS S S G +PS +
Sbjct: 1559 PGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSP--SYSPTSPAYEPRSPGGYTPQSPSYS 1616
Query: 69 HSSCRRAVRPGLSVAGKASAPR-----PASHLYSKLRPRL--VSVTVSTSSP--SAWKPS 119
+S P S + +P P S YS P S + S +SP S PS
Sbjct: 1617 PTS------PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1670
Query: 120 PANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPP 153
+ S S + + S T PS P +P PT P
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1704
Score = 38.1 bits (87), Expect = 0.004
Identities = 44/155 (28%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 14 SWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGT---------TPGGA 64
+WS G G P +G P+A + +S P+ S G+ +PGGA
Sbjct: 1530 AWSPSVGS-GMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGA 1588
Query: 65 PSGAHSSCRRAVRPGLSVAGKASAPR--PASHLYSKLRPRL--VSVTVSTSSPSAWKPSP 120
S ++S A P +P P S YS P S S +SPS SP
Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648
Query: 121 --ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPP 153
+ S S + + S T PS P +P PT P
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 33.1 bits (74), Expect = 0.13
Identities = 38/141 (26%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 23 GAQPAQSGSW-PAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLS 81
G QS S+ P + + S YS S S +P S P S
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 82 VAGKASAPR-----PASHLYSKLRPRL--VSVTVSTSSP--SAWKPSPANCSSSGKDEAA 132
+ +P P S YS P S + S +SP S PS + S S +
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 133 ASSTTPPSMGPAAPGPGPTPP 153
+ S T PS P +P PT P
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSP 1746
Score = 32.7 bits (73), Expect = 0.17
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1729 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP 1788
Query: 86 ASAPR-----PASHLYSKLRPRLV--SVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP 138
+ +P P S YS PR S T + SSPS SP+ +S K + S +P
Sbjct: 1789 SYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSP 1848
Query: 139 --PSMGPAAPGPGPTPP 153
P P +P PT P
Sbjct: 1849 SSPEYTPTSPKYSPTSP 1865
Score = 32.3 bits (72), Expect = 0.22
Identities = 36/139 (25%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 25 QPAQSGSW-PAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVA 83
+P G + P + + S YS S S +P S P S
Sbjct: 1601 EPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPT 1660
Query: 84 GKASAPR-----PASHLYSKLRPRL--VSVTVSTSSP--SAWKPSPANCSSSGKDEAAAS 134
+ +P P S YS P S + S +SP S PS + S S + +
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720
Query: 135 STTPPSMGPAAPGPGPTPP 153
S T PS P +P PT P
Sbjct: 1721 SPTSPSYSPTSPSYSPTSP 1739
Score = 32.0 bits (71), Expect = 0.29
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1617 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1676
Query: 86 ASAPR-----PASHLYSKLRPRL--VSVTVSTSSP--SAWKPSPANCSSSGKDEAAASST 136
+ +P P S YS P S + S +SP S PS + S S + + S
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 137 TPPSMGPAAPGPGPTPP 153
T PS P +P PT P
Sbjct: 1737 TSPSYSPTSPNYSPTSP 1753
Score = 32.0 bits (71), Expect = 0.29
Identities = 34/137 (24%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1697
Query: 86 ASAPR-----PASHLYSKLRPRL--VSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP 138
+ +P P S YS P S + S +SPS SP+ +S + + TP
Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757
Query: 139 --PSMGPAAPGPGPTPP 153
PS P +P PT P
Sbjct: 1758 TSPSYSPTSPSYSPTSP 1774
Score = 31.2 bits (69), Expect = 0.49
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 2/130 (1%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1708 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSP 1767
Query: 86 ASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP--PSMGP 143
+ +P ++ + S + S +SPS SP+ SS + + + TP PS P
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 144 AAPGPGPTPP 153
++P PT P
Sbjct: 1828 SSPSYSPTSP 1837
Score = 29.6 bits (65), Expect = 1.4
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 9/137 (6%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1718
Query: 86 ASAPR-----PASHLYSKLRPRL--VSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP 138
+ +P P S YS P S S +SP+ SP+ +S + + TP
Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778
Query: 139 --PSMGPAAPGPGPTPP 153
P+ P +P PT P
Sbjct: 1779 TSPNYSPTSPSYSPTSP 1795
Score = 28.9 bits (63), Expect = 2.4
Identities = 33/137 (24%), Positives = 44/137 (32%), Gaps = 9/137 (6%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S +P S P S
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 86 ASAPR-----PASHLYSKLRPRL--VSVTVSTSSPSAWKPSPANCSSSGKDEAAAS--ST 136
+ +P P S YS P S + +SPS SP+ +S + S
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785
Query: 137 TPPSMGPAAPGPGPTPP 153
T PS P +P PT P
Sbjct: 1786 TSPSYSPTSPSYSPTSP 1802
Score = 28.9 bits (63), Expect = 2.4
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 91 PASHLYSKLRPRLV--SVTVSTSSPSAWKPSPANCSSSGKDEAAAS--STTPPSMGPAAP 146
P+S YS P+ S + S SSP SP +S K + S T P+ P P
Sbjct: 1827 PSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTP 1886
Query: 147 GPGPTPP 153
PT P
Sbjct: 1887 KYSPTSP 1893
Score = 28.1 bits (61), Expect = 4.2
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 57 TGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPR--PASHLYSKLRPRLV--SVTVSTSS 112
T T+P +P+ S S + S+PR P S Y+ P S + S +S
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTS 1836
Query: 113 PSAWKPSPANCSSSGK--DEAAASSTTPPSMGPAAPGPGPTPP 153
P SP+ SS + + S T P P +P PT P
Sbjct: 1837 PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSP 1879
Score = 27.7 bits (60), Expect = 5.4
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 57 TGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPR--PASHLYSKLRPRLVSVTVSTSSPS 114
T T+P +PS + S ++P+ P S YS P+ S +SP+
Sbjct: 1840 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY-----SPTSPT 1894
Query: 115 AWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPP 153
SP +S K S T P+ P +P PT P
Sbjct: 1895 YSPTSPVYTPTSPK-----YSPTSPTYSPTSPKYSPTSP 1928
Score = 26.9 bits (58), Expect = 9.3
Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGK 85
P P + + S YS S S TP S P +
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 86 ASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTP--PSMGP 143
+P S+ + S + S SSP SP SS ++ S +P P P
Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841
Query: 144 AAPGPGPTPP 153
+P P+ P
Sbjct: 1842 TSPSYSPSSP 1851
Score = 26.9 bits (58), Expect = 9.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 91 PASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCS-SSGKDEAAASSTTPPSMGPAAPGPG 149
P S +Y+ P+ S T T SP++ K SP + + S + + S T P P +P
Sbjct: 1897 PTSPVYTPTSPKY-SPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1955
Query: 150 PTPP 153
T P
Sbjct: 1956 LTSP 1959
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 23 GAQPAQSGSWPAAGAASSRRMKYSLPSD------GLCALSTGTTPGGAPSGAHSSCRRAV 76
GA+ ++S S ++G++SS S S+ G G GG A SS +
Sbjct: 2553 GAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612
Query: 77 RPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASST 136
S + +S+ +S S S + S+SS S+ S ++ SSS +++SST
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 137 TPPSMGPAA---PGPGPTPPPPGRRERQRRSNSSSASVAPLAH 176
T ++ P PT P + ++ + P AH
Sbjct: 2673 TDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAH 2715
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/119 (24%), Positives = 48/119 (40%)
Query: 2 ASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP 61
AS ++ S SSS S+ + + + S S ++ ++SS S S + S+ ++
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 62 GGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
S S A P + +A+ P A+ K RP S T +P P P
Sbjct: 2673 TDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPP 2731
Score = 35.0 bits (79), Expect = 0.034
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 25/176 (14%)
Query: 2 ASEAAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP 61
+S ++ S SSS S+ + G + + G G + S S + ++ ++
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSS 2618
Query: 62 GGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPA 121
+ S + SS + S + +S+ +S S S + S+SS S+ +
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SSSSSSSSSSSSSTTDE 2675
Query: 122 NCSSSGKDEAAASSTTPPSM----------------------GPAAPGPGPTPPPP 155
+ S S DEAA + T PS G P P P PPP
Sbjct: 2676 DSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPP 2731
Score = 31.6 bits (70), Expect = 0.38
Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 33 PAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPA 92
PA S++R D TG G +G+ +A G + KA R A
Sbjct: 2293 PALLVPSAKRRSRKTSKD------TGEGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAA 2346
Query: 93 SHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTP 152
+ + S+P A +PS S E P PA P P P P
Sbjct: 2347 TLEEGNPTDEV------PSTPLALEPSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAP 2400
Query: 153 P 153
P
Sbjct: 2401 P 2401
Score = 28.9 bits (63), Expect = 2.4
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 79 GLSVAGKASAPRPASHLYSKLRPRLVSVTVST-----SSPSAWKPSPANCSSS------- 126
GL AGKA L + P L + T S P + + SP +
Sbjct: 954 GLEAAGKAGLATAGPGLLPRKPPGLAAGPAGTYGKAVSPPPSPRASPVAALKAKVIQKLE 1013
Query: 127 --GKDEAAASSTTPPSMGPAAPGPGPTPPPPG 156
K A A TP S P +P P PP PG
Sbjct: 1014 DVSKPPAYAYPATPSSH-PTSPPPASPPPTPG 1044
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 0.002
Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 16 SAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSG-AHSSCRR 74
+A AG LG AAGA + P++G + G P P+G A
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAA------PAEG----APGAAPEPPPAGRARPGGGG 101
Query: 75 AVRPGLSVAGKASAPRPASHLYSKLRP-------RLVSVTVSTSSPSAWKPSPANCSSSG 127
RPG + P + +KLRP V + + + +P+PA +
Sbjct: 102 PQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPA 161
Query: 128 KDEAAASSTTP-PSMGPAAPGPGPTPPPPGRRERQRRSNSSSA 169
A A+ P P GP PGPGP P P + N S+A
Sbjct: 162 GPAALAARAGPGPGPGPG-PGPGPGPGKPAGPGAAQTLNGSAA 203
Score = 38.1 bits (87), Expect = 0.004
Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 21 GLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPGL 80
G A PA + P+ AA + + P A +T P G P+G ++ P
Sbjct: 245 GAAAPPAPAA--PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAA 302
Query: 81 SV----AGKASAPRPASH----LYSKLRPRLVSVT----VSTSSPS----AWKPSPANCS 124
+ AG A AP PA+ + + P + V SP A P+ +
Sbjct: 303 AQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLA 362
Query: 125 SSGKDEAAASSTTPPSMGPAAPGPGPTPPP-PG 156
+SG AAS P+M A P P PPP PG
Sbjct: 363 ASGPASTAASMVIGPTMQGALPSPAAVPPPAPG 395
Score = 34.7 bits (78), Expect = 0.044
Identities = 45/180 (25%), Positives = 61/180 (33%), Gaps = 30/180 (16%)
Query: 16 SAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPG-GAPSG------- 67
+A A G +PA +G AG A+ P G G PG G P+G
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP---GPGPGPGPGKPAGPGAAQTL 198
Query: 68 ----AHSSCRRAVRPGLSVAGKASA-----PRPASHLYSKLRPRLVSVTV-----STSSP 113
A + A P +S+ A P+PA+ P V + S P
Sbjct: 199 NGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPP 258
Query: 114 SAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAP 173
+A P+ + A A+ PP P P PPP + N SA AP
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ-----NGGSAGAAP 313
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/136 (26%), Positives = 46/136 (33%), Gaps = 4/136 (2%)
Query: 20 GGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPG 79
GG + P A S + + PS TP PS S G
Sbjct: 975 GGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTP---PSPKGSPAATPFPKG 1031
Query: 80 LSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPP 139
S A+ P P + P+ T + + PS K PA S G A++ P
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSP-KGGPATPSLKGAPTPPAATPPSP 1090
Query: 140 SMGPAAPGPGPTPPPP 155
GPA P P P PP
Sbjct: 1091 KGGPATPSPKGAPMPP 1106
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 20 GGLGAQPAQSG-SWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRP 78
GGL P + + PAA S + + P G TTP P
Sbjct: 1138 GGLATPPPKGAPTTPAATPPSPKGGLATPPPKG-----APTTPAATPPSPKGGLATPSPK 1192
Query: 79 GLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPAN--CSSSGKDEAAASST 136
G A+ P P L + S + ++P+A PSP + S K +
Sbjct: 1193 GAPTTPAATPPSPKGGLATP------SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1246
Query: 137 TPPSM--GPAAPGPGPTPPPP 155
TPPS GPA P P P PP
Sbjct: 1247 TPPSPKGGPATPPPKGAPTPP 1267
Score = 34.3 bits (77), Expect = 0.058
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 105 SVTVST----SSPSAWKPSPANCSSSGKDEAAASSTTPPS--MGPAAPGPGPTP-PPPGR 157
+VT ST SP PA S S K+ + TPPS GPA P P TP PP
Sbjct: 1584 AVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVT 1643
Query: 158 RERQRRSNSSSASV 171
+ S +S ASV
Sbjct: 1644 PSSLKDSPTSPASV 1657
Score = 33.9 bits (76), Expect = 0.076
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 107 TVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
T ++P + K PA S G A++ P GPA P P P PP
Sbjct: 964 TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPP 1012
Score = 31.2 bits (69), Expect = 0.49
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 78 PGLSVAGKASAPRPASHLYS-KLRPRLVSVTVSTSSPSAWKPSPAN--CSSSGKDEAAAS 134
P LS+ +S+P+ A + K P S + + P+A PSP + S K
Sbjct: 909 PALSMT--SSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPP 966
Query: 135 STTPPSM--GPAAPGPGPTPPPP 155
+ TPPS GPA P P P PP
Sbjct: 967 AATPPSPKGGPATPSPKGAPTPP 989
Score = 30.4 bits (67), Expect = 0.84
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 86 ASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAA 145
A P A+ K P S + + P+A PSP ++ + A TPP+ P +
Sbjct: 939 APTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP---TPPAATPPS 995
Query: 146 PGPGPTPPPP 155
P GP P P
Sbjct: 996 PKGGPATPSP 1005
Score = 29.6 bits (65), Expect = 1.4
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 21 GLGAQPAQSGS-WPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHSSCRRAVRPG 79
G+ A P+ G+ P A S + + PS TP G + + G
Sbjct: 929 GIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPK----G 984
Query: 80 LSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTTPP 139
A+ P P K P S + + P+ PSP ++ AS TPP
Sbjct: 985 APTPPAATPPSP------KGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS--TPP 1036
Query: 140 SMGPAAP--GPGPTPPPPG 156
+ P +P P TP P G
Sbjct: 1037 AATPPSPKGSPAATPLPKG 1055
Score = 29.6 bits (65), Expect = 1.4
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 28/120 (23%)
Query: 59 TTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYS-KLRPRLVSVTVSTSSPSAWK 117
T P P S P + K + PA+ L S K P S+ + + P+A
Sbjct: 1034 TPPAATPPSPKGS------PAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087
Query: 118 PSP----ANCSSSGKDEAAASS--------TTPPSMG----PAAPGPGP-----TPPPPG 156
PSP A S G A++ TPP G PAA P P TPPP G
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKG 1147
Score = 29.3 bits (64), Expect = 1.9
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 61 PGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSP 120
P GAP+ ++ +++ GL+ AP PA V+ SP K P
Sbjct: 1260 PKGAPTPP-AATPPSLKGGLATPPHKGAPNPA--------------VVTPPSP---KGGP 1301
Query: 121 ANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
A G A++ P P P P P PP
Sbjct: 1302 ATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPP 1336
Score = 28.9 bits (63), Expect = 2.4
Identities = 40/163 (24%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 5 AAVLPSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP--- 61
AA LPS GG + P A S + + PS + TP
Sbjct: 1061 AATLPSPK-------GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Query: 62 -GGAPSGAHSSCRR--AVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKP 118
GG + H A P G A+ P + P ++T P
Sbjct: 1114 KGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPT 1173
Query: 119 SPANCSSSGKDEAAASSTTPPSMGPAAPGPGP-----TPPPPG 156
+PA S K A S PAA P P TP P G
Sbjct: 1174 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG 1216
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 111 SSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
SSP A PS + S K+ + T PS A P TPP P
Sbjct: 1580 SSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSP 1624
Score = 26.9 bits (58), Expect = 9.3
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 40/189 (21%)
Query: 20 GGLGA-QPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP---GGAPSGAHSSCRR- 74
GGL P + + PAA S + + P G T P GG + H
Sbjct: 1230 GGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNP 1289
Query: 75 -AVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAA 133
V P G A++P + P + T P PA S K
Sbjct: 1290 AVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTL 1349
Query: 134 SSTTP---------------------------PSMGPAAPGPGPTPPPPGRRERQRRSNS 166
+TTP P+M P +P GP P P + +
Sbjct: 1350 PATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP-------KGDP 1402
Query: 167 SSASVAPLA 175
+S +V PL+
Sbjct: 1403 TSPAVIPLS 1411
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 39.3 bits (90), Expect = 0.002
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 15/180 (8%)
Query: 6 AVLPSESSSWSAVAGGLGAQPAQ-SGSWPAAGAASSRRMKYSL-PSDGLC-ALSTGTTPG 62
AV P+ SS+ + G AQ A +G P A + M ++ P G+ AL P
Sbjct: 97 AVAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGVTEALGAAEAPA 156
Query: 63 --GAPSGAHS-----SCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSA 115
GAP A + + R AV PG V +A+AP + P V+ +SP+
Sbjct: 157 MAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTE 216
Query: 116 WKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAPLA 175
+P + +G A++ T + P G T PG ++ + + P A
Sbjct: 217 AAEAPVPATPTG-----AAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKA 271
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/168 (29%), Positives = 62/168 (36%), Gaps = 36/168 (21%)
Query: 16 SAVAGGLGAQ-PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTP----GGAPSGAHS 70
+A+ G G Q P ++ S P A LP L A P GGAP+ A S
Sbjct: 411 AAMLNGEGLQSPPRAQSAPPEAAV--------LPPSPLPAPVASPRPFQPGGGAPTPAPS 462
Query: 71 SCRRAVRP---GL--------SVAGKASAPRPASHLYSKLRPR------------LVSVT 107
R+ RP GL SV + AP+ A+ L P L S T
Sbjct: 463 IFNRSARPFTPGLQGQRPTTTSVIFRPLAPKRANDSLGGLSPAPPPFLSSQGPTPLPSFT 522
Query: 108 VSTSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
S + SP+ SSG A +S P P PG P PP P
Sbjct: 523 SGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAP 570
Score = 35.8 bits (81), Expect = 0.020
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 13/145 (8%)
Query: 26 PAQSGSWPAAGAASSRRMKYSLPSDGLCALSTGTTPGGAPSGAHS--SCRRAVRPGLSVA 83
P G P + R + +D L LS P + G S V V+
Sbjct: 473 PGLQGQRPTTTSVIFRPLAPKRANDSLGGLSPAPPPFLSSQGPTPLPSFTSGVPSHAPVS 532
Query: 84 GKASAPRPA------SHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSGKDEAAASSTT 137
G S PR + S LY R V+ + P+ PS A +S+ S+
Sbjct: 533 GSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAP--PSAAAMTSTAS--IFLSAPL 588
Query: 138 PPSMGPAAPGPGP-TPPPPGRRERQ 161
PS P AP PGP P PP RE++
Sbjct: 589 RPSARPEAPAPGPGAPEPPSAREQR 613
Score = 27.3 bits (59), Expect = 7.1
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 88 APRPASHLYSKLRPRLVSVTVSTSSPSAWKPSPANCSSSG----------KDEAAASSTT 137
AP+P S L+ V+ ++ SA P P G D T
Sbjct: 726 APKPPSR-------GLLDGLVNGAASSAGIPEPPRLQGRGGELFAKRQSRADRYVVEGTP 778
Query: 138 PPSMGPAAPGPGPTPPPP 155
P +GP P PTP P
Sbjct: 779 GPGLGPRPRSPSPTPSLP 796
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 39.3 bits (90), Expect = 0.002
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 15/180 (8%)
Query: 6 AVLPSESSSWSAVAGGLGAQPAQ-SGSWPAAGAASSRRMKYSL-PSDGLC-ALSTGTTPG 62
AV P+ SS+ + G AQ A +G P A + M ++ P G+ AL P
Sbjct: 97 AVAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGVTEALGAAEAPA 156
Query: 63 --GAPSGAHS-----SCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSA 115
GAP A + + R AV PG V +A+AP + P V+ +SP+
Sbjct: 157 MAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTE 216
Query: 116 WKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPPGRRERQRRSNSSSASVAPLA 175
+P + +G A++ T + P G T PG ++ + + P A
Sbjct: 217 AAEAPVPATPTG-----AAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKA 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.119 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,139,526
Number of Sequences: 37866
Number of extensions: 680534
Number of successful extensions: 13889
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 1159
Number of HSP's that attempted gapping in prelim test: 7655
Number of HSP's gapped (non-prelim): 5624
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.