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Search of human proteins with 239745972
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745972 PREDICTED: hypothetical protein XP_002343629 [Homo
sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745972 PREDICTED: hypothetical protein XP_002343629 [Homo ... 519 e-148
gi|118498362 kinectin 1 isoform b [Homo sapiens] 37 0.022
gi|118498356 kinectin 1 isoform a [Homo sapiens] 37 0.022
gi|33620775 kinectin 1 isoform a [Homo sapiens] 37 0.022
gi|118498368 kinectin 1 isoform c [Homo sapiens] 35 0.048
gi|31742484 erythroid differentiation-related factor 1 [Homo sap... 35 0.082
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 34 0.11
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 34 0.11
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 34 0.11
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 34 0.11
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 34 0.11
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 34 0.11
gi|221219020 NYD-SP11 protein [Homo sapiens] 32 0.41
gi|21361820 IFT46 [Homo sapiens] 32 0.41
gi|31542634 filamin A interacting protein 1 [Homo sapiens] 32 0.53
gi|38202246 syntaphilin [Homo sapiens] 32 0.70
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 31 0.91
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 31 0.91
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 31 0.91
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 31 0.91
gi|203096856 kinesin family member 7 [Homo sapiens] 31 1.2
gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 30 1.6
gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 30 1.6
gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 30 1.6
gi|5730009 ret finger protein [Homo sapiens] 30 1.6
gi|212276078 leucine rich repeat (in FLII) interacting protein 1... 30 2.0
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 30 2.0
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 2.0
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 2.0
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 2.0
>gi|239745972 PREDICTED: hypothetical protein XP_002343629 [Homo
sapiens]
Length = 254
Score = 519 bits (1337), Expect = e-148
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAGKIDLLRDSHIFQLFWREAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYLY 60
MAGKIDLLRDSHIFQLFWREAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYLY
Sbjct: 1 MAGKIDLLRDSHIFQLFWREAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYLY 60
Query: 61 QPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDR 120
QPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDR
Sbjct: 61 QPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDR 120
Query: 121 VEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQE 180
VEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQE
Sbjct: 121 VEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQE 180
Query: 181 LIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGKISLWGCVEVWRKFSDGALCGV 240
LIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGKISLWGCVEVWRKFSDGALCGV
Sbjct: 181 LIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGKISLWGCVEVWRKFSDGALCGV 240
Query: 241 PKLFGNTSPWPRTT 254
PKLFGNTSPWPRTT
Sbjct: 241 PKLFGNTSPWPRTT 254
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 36.6 bits (83), Expect = 0.022
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 38 LSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTD 97
L E E + H+ E+ + ++ S +F +L LK E L ++ + K+ + +D
Sbjct: 877 LQEENESLKAHVQEVAQ-HNLKEASSASQFEELEIVLKEKENELKRLEAMLKE---RESD 932
Query: 98 LDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQA-----VHAAKVILQ-VKESLGLNG 151
L S+ +++ D QD+ K ++EQ+K+ ++ + KVI + KE GL
Sbjct: 933 LSSKTQLL--QDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWN 990
Query: 152 DFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQD----ISEARCKGLQALSL 204
+ L + ++ RE + + L +K+LQD S+ R + ++A+ L
Sbjct: 991 ELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVEL 1047
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 36.6 bits (83), Expect = 0.022
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 38 LSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTD 97
L E E + H+ E+ + ++ S +F +L LK E L ++ + K+ + +D
Sbjct: 900 LQEENESLKAHVQEVAQ-HNLKEASSASQFEELEIVLKEKENELKRLEAMLKE---RESD 955
Query: 98 LDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQA-----VHAAKVILQ-VKESLGLNG 151
L S+ +++ D QD+ K ++EQ+K+ ++ + KVI + KE GL
Sbjct: 956 LSSKTQLL--QDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWN 1013
Query: 152 DFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQD----ISEARCKGLQALSL 204
+ L + ++ RE + + L +K+LQD S+ R + ++A+ L
Sbjct: 1014 ELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVEL 1070
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 36.6 bits (83), Expect = 0.022
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 38 LSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTD 97
L E E + H+ E+ + ++ S +F +L LK E L ++ + K+ + +D
Sbjct: 900 LQEENESLKAHVQEVAQ-HNLKEASSASQFEELEIVLKEKENELKRLEAMLKE---RESD 955
Query: 98 LDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQA-----VHAAKVILQ-VKESLGLNG 151
L S+ +++ D QD+ K ++EQ+K+ ++ + KVI + KE GL
Sbjct: 956 LSSKTQLL--QDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWN 1013
Query: 152 DFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQD----ISEARCKGLQALSL 204
+ L + ++ RE + + L +K+LQD S+ R + ++A+ L
Sbjct: 1014 ELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVEL 1070
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 35.4 bits (80), Expect = 0.048
Identities = 32/157 (20%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 38 LSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTD 97
L E E + H+ E+ + ++ S +F +L LK E L ++ + K+ + +D
Sbjct: 900 LQEENESLKAHVQEVAQ-HNLKEASSASQFEELEIVLKEKENELKRLEAMLKE---RESD 955
Query: 98 LDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQA---VHAAKVILQVKESLGLNGDFS 154
L S+ +++ D QD+ K ++EQ+K+ ++ + H + + + ++G ++
Sbjct: 956 LSSKTQLL--QDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWN 1013
Query: 155 VLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQDI 191
L++L + ++ E Q+ ++AK++L+ +
Sbjct: 1014 ELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKL 1050
>gi|31742484 erythroid differentiation-related factor 1 [Homo sapiens]
Length = 1204
Score = 34.7 bits (78), Expect = 0.082
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 1 MAGKIDLL-RDSHIFQLFWREAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYL 59
++G +D++ R H FQL +E E +PK AA + P E +++L +++
Sbjct: 1070 LSGALDIMVRTEHAFQLIQKELIEEFGQPKSGDAAAAADASPSLNRE-EVMKLLSIFESR 1128
Query: 60 YQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDL 98
+ IKL K E D I K + Y+ L
Sbjct: 1129 LSFLLLQSIKLLSSTKKKTSNNIEDDTILKTNKHIYSQL 1167
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Query: 70 LHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEYHH 129
L +DLK+G++ LA++++ + ++TDL+ E K +D Q I+ +EQ + H
Sbjct: 651 LEEDLKNGKILLAKVELEKRQLQERFTDLEKE-KSNMEIDMTYQLKVIQQSLEQEEAEH- 708
Query: 130 LHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQ 189
A K L K + ++ ++ + E + ++ ++L++ + L Q
Sbjct: 709 -----KATKARLADKNKI---------------YESIEEAKSEAMKEMEKKLLEERTLKQ 748
Query: 190 DI------SEARC 196
+ +E RC
Sbjct: 749 KVENLLLEAEKRC 761
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 29 KEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKS-GEVTLAEIDVI 87
KED +AE L + ER++ + L P R+F++ + ++ G TL+ ++
Sbjct: 226 KEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLL 285
Query: 88 FKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIK-EYHHLHQAVHAAKVILQVKES 146
NK TD S++ T+ + W ++++++++ E L + + ++ ++
Sbjct: 286 --KMFNKATDAVSKM----TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKE 339
Query: 147 LGLN 150
L LN
Sbjct: 340 LALN 343
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 29 KEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKS-GEVTLAEIDVI 87
KED +AE L + ER++ + L P R+F++ + ++ G TL+ ++
Sbjct: 161 KEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLL 220
Query: 88 FKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIK-EYHHLHQAVHAAKVILQVKES 146
NK TD S++ T+ + W ++++++++ E L + + ++ ++
Sbjct: 221 --KMFNKATDAVSKM----TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKE 274
Query: 147 LGLN 150
L LN
Sbjct: 275 LALN 278
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 29 KEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKS-GEVTLAEIDVI 87
KED +AE L + ER++ + L P R+F++ + ++ G TL+ ++
Sbjct: 226 KEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLL 285
Query: 88 FKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIK-EYHHLHQAVHAAKVILQVKES 146
NK TD S++ T+ + W ++++++++ E L + + ++ ++
Sbjct: 286 --KMFNKATDAVSKM----TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKE 339
Query: 147 LGLN 150
L LN
Sbjct: 340 LALN 343
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 34.3 bits (77), Expect = 0.11
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 36 ELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAE-----IDVIFKD 90
E L +E ER++ L++ D + + RK ++ +++ E+ AE + +F +
Sbjct: 1701 ETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGE 1760
Query: 91 FVNKYTDLDSELKIMCTVDHQ----DQRDWIKDRVEQIKEYHHLHQAVHAAKVILQVKES 146
+ +++ +L+ D++ D D +++ ++I+E + L L+ K+
Sbjct: 1761 SRGENEEMEKDLREKLA-DYKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKE 1819
Query: 147 LGLNGDFSVLNTLLNFTDNFDDFRRETLDQIN 178
+G + NTL D D+ R D+IN
Sbjct: 1820 AVESGKRQIENTLKEGNDILDEANR-LADEIN 1850
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 34.3 bits (77), Expect = 0.11
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 36 ELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAE-----IDVIFKD 90
E L +E ER++ L++ D + + RK ++ +++ E+ AE + +F +
Sbjct: 1701 ETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGE 1760
Query: 91 FVNKYTDLDSELKIMCTVDHQ----DQRDWIKDRVEQIKEYHHLHQAVHAAKVILQVKES 146
+ +++ +L+ D++ D D +++ ++I+E + L L+ K+
Sbjct: 1761 SRGENEEMEKDLREKLA-DYKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKE 1819
Query: 147 LGLNGDFSVLNTLLNFTDNFDDFRRETLDQIN 178
+G + NTL D D+ R D+IN
Sbjct: 1820 AVESGKRQIENTLKEGNDILDEANR-LADEIN 1850
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 32.3 bits (72), Expect = 0.41
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 118 KDRVEQIKE--YHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLD 175
K+++ Q KE ++ + H+ K ++QVK LG+ N +L + +ET+
Sbjct: 1850 KEKLAQRKENLLYNKERLTHSKKQLVQVKNKLGM------FNKILAQVEEKLTQEKETVI 1903
Query: 176 QINQELIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGKISLWGCVEV 228
+ ++L + +K L + ++ K + L+ K + + + GK L G +++
Sbjct: 1904 KKKEKLAETEKKLVQVEDSLAKKQEKLAQEKMKLALEKAMVQGKKRLRGELDI 1956
>gi|21361820 IFT46 [Homo sapiens]
Length = 355
Score = 32.3 bits (72), Expect = 0.41
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 19 REAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVY---DYLYQPSYRKFIKLHQDLK 75
R +E + +D +++E S+ +++ E H LE Y DY + P + +L Q +
Sbjct: 78 RGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAEIKELFQYIS 137
Query: 76 SGEVTLAEIDVIFK----DFVNKYTDLDSELKI 104
L ++D K DF+ D+D+ LK+
Sbjct: 138 RYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKV 170
>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
Length = 1213
Score = 32.0 bits (71), Expect = 0.53
Identities = 43/214 (20%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 19 REAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLH--QDLKS 76
RE E + + K ++E + LS + ++ + +EEV + + RK +L +D K
Sbjct: 570 RERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPEDNKI 629
Query: 77 GEVTLA---------EIDVIFKDFV---NKYTDLDSELKIMCTVDHQDQRDWIKDRVEQI 124
E+TL +++V+ D + ++Y L+ + + QD+ +++ ++E+I
Sbjct: 630 KELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRT-----EQDKANFLSQQLEEI 684
Query: 125 KEYHHLHQAVHAAKVILQVKE-----------SLGLNGDFSVLNTLLNFTDNFDDFRRET 173
K ++A+ +V+ Q E S L + L ++ N +D +
Sbjct: 685 KHQIAKNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELMNKEDQLSQL 744
Query: 174 LDQINQELIQAKKLLQDISEARCKGLQALSLRKE 207
Q++ ++Q ++ +++ ++ + G + L+L KE
Sbjct: 745 --QVDYSVLQ-QRFMEEENKNKNMGQEVLNLTKE 775
>gi|38202246 syntaphilin [Homo sapiens]
Length = 494
Score = 31.6 bits (70), Expect = 0.70
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 74 LKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQA 133
L+ EV + + KD ++ D D+E+ + T + Q DWI++ +++ L +A
Sbjct: 79 LQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEA 138
Query: 134 VHAAKVILQVKESLGLN 150
K + QV +++ N
Sbjct: 139 RKEIKQLKQVIDTVKNN 155
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 31.2 bits (69), Expect = 0.91
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 61 QPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDR 120
+ + ++ KL QDL + + E+D + + NK +L SE + W ++
Sbjct: 428 EKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYL----------WREEN 477
Query: 121 VEQIKEYHHLHQAVHAAKVILQVKESL--GLNGDFSVLNTLLNFTDNFDDFRRETLDQ 176
EQ QA+ A + L+ K+ L G ++LN + + D FRR+ ++Q
Sbjct: 478 AEQ--------QALAAKREDLEKKQQLLRAATGK-AILNGIDSINKVLDHFRRKGINQ 526
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 31.2 bits (69), Expect = 0.91
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 26/195 (13%)
Query: 21 AAEPLSEPKEDQEAAELLSEPEEES-----------ERHILELEEVYDYLYQPSYRK--F 67
AA+ K +QE AEL EEE+ +RH LEE+ + L Q K
Sbjct: 1163 AAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANL 1222
Query: 68 IKLHQDLKSGEVTLA-EIDVIFK---DFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQ 123
K Q L++ LA E+ V+ + + +K LD++++ + H + + RVE
Sbjct: 1223 EKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQEL----HAKVSEGDRLRVEL 1278
Query: 124 IKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQIN----- 178
++ L + +L+ E G+ + D + + ET ++N
Sbjct: 1279 AEKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRI 1338
Query: 179 QELIQAKKLLQDISE 193
++L + K LQ+ E
Sbjct: 1339 RQLEEEKNSLQEQQE 1353
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 31.2 bits (69), Expect = 0.91
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 27 EPKEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDV 86
E ++ Q+ +LL+ E+E + + E D +Q + K ++ ++ K E + E
Sbjct: 477 EREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAK--EIAKEEKKHEQMIKEYQE 534
Query: 87 IFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQI 124
+Y DL++E +I TV+ + +D +KD E +
Sbjct: 535 KIDVLSQQYMDLENEFRIALTVEARRFQD-VKDGFENV 571
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 31.2 bits (69), Expect = 0.91
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 27 EPKEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDV 86
E ++ Q+ +LL+ E+E + + E D +Q + K ++ ++ K E + E
Sbjct: 570 EREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAK--EIAKEEKKHEQMIKEYQE 627
Query: 87 IFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQI 124
+Y DL++E +I TV+ + +D +KD E +
Sbjct: 628 KIDVLSQQYMDLENEFRIALTVEARRFQD-VKDGFENV 664
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 30.8 bits (68), Expect = 1.2
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 32/191 (16%)
Query: 29 KEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIF 88
KE ++A E L +SE+ + ELE + Q + +L ++ + AE+
Sbjct: 801 KEKKQATERLVSLSAQSEKRLQELERNVQLMRQQQGQLQRRLREETEQKRRLEAEMS--- 857
Query: 89 KDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQAVHAAKVILQVKESLG 148
++ + ELK H+ Q+ +K + E+I + Q K G
Sbjct: 858 ---KRQHRVKELELK------HEQQQKILKIKTEEIAAF--------------QRKRRSG 894
Query: 149 LNGDFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQDISEARCKGLQALSLRKEF 208
NG L + +++ LDQ ++++Q ++ L+++ E K +A+ +KE
Sbjct: 895 SNGSVVSLEQQQKIEE-----QKKWLDQEMEKVLQQRRALEELGEELHK-REAILAKKEA 948
Query: 209 ICWVREALGGK 219
+ + L K
Sbjct: 949 LMQEKTGLESK 959
>gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1363
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 36 ELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQD----LKSGEVTLAEIDVIFKDF 91
E SE +E + + I +LEE++ ++ +L++D LK E+TL +++ F
Sbjct: 929 EYKSELDERAMQAIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKM 988
Query: 92 VNKYTDLDSELK 103
Y D+ +EL+
Sbjct: 989 KTAYEDVTTELE 1000
>gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1366
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 36 ELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQD----LKSGEVTLAEIDVIFKDF 91
E SE +E + + I +LEE++ ++ +L++D LK E+TL +++ F
Sbjct: 958 EYKSELDERAMQAIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKM 1017
Query: 92 VNKYTDLDSELK 103
Y D+ +EL+
Sbjct: 1018 KTAYEDVTTELE 1029
>gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1139
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 36 ELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQD----LKSGEVTLAEIDVIFKDF 91
E SE +E + + I +LEE++ ++ +L++D LK E+TL +++ F
Sbjct: 958 EYKSELDERAMQAIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKM 1017
Query: 92 VNKYTDLDSELK 103
Y D+ +EL+
Sbjct: 1018 KTAYEDVTTELE 1029
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 31 DQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQ 72
+Q AELLS + E E+ + E E++Y L + YR +L +
Sbjct: 165 EQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEE 206
>gi|212276078 leucine rich repeat (in FLII) interacting protein 1
isoform 1 [Homo sapiens]
Length = 640
Score = 30.0 bits (66), Expect = 2.0
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 21/183 (11%)
Query: 38 LSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTD 97
+S E S R I EL E+ D + K Q LK + +LAE++ +K +
Sbjct: 253 ISIDTEASIREIKELNELKDQIQDVEG----KYMQGLKEMKDSLAEVEEKYKKAMVSNAQ 308
Query: 98 LDSE-LKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVL 156
LD+E M VD +D + + EQ+ E ++ + KE S+L
Sbjct: 309 LDNEKTNFMYQVD--TLKDMLLELEEQLAESRRQYEEKN--------KEFEREKHAHSIL 358
Query: 157 NTLLNFTDNFDDFRRETLDQINQ-ELIQAKKL-----LQDISEARCKGLQALSLRKEFIC 210
R E L++I Q + QA + LQ+ E + K + AL +KEF
Sbjct: 359 QFQFAEVKEALKQREEMLEEIRQLQQKQASSIREISDLQETIEWKDKKIGALERQKEFFD 418
Query: 211 WVR 213
VR
Sbjct: 419 SVR 421
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 30.0 bits (66), Expect = 2.0
Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 1 MAGKIDLLRDSHIFQLFWREAAEPLSEP--KEDQEAAELLSEPEEESERHILELEEVYDY 58
++ K+++L + + + + + LS+ KE + + + E SER I LE+ ++
Sbjct: 503 LSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEH 562
Query: 59 LYQP----SYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELK-IMCTVDHQDQ 113
L Q R I +K E + K+ +K + ++ E + I ++H +
Sbjct: 563 LNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKE 622
Query: 114 RDWIKDRVEQIK-EYHH-------LHQAVHAAKVILQVKESLGL-NGDFSVLNTLLNFT- 163
+ +R E+++ E HH L + + K+ + E+L N + N L T
Sbjct: 623 KG---ERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTL 679
Query: 164 DNFDD--FRRETLDQINQELIQAK-KLLQDISEARCKGLQALSLRKE 207
D+F + F+ E+L++ N +L + +L +++ +C ++ L+ E
Sbjct: 680 DSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLE 726
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 30.0 bits (66), Expect = 2.0
Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 1 MAGKIDLLRDSHIFQLFWREAAEPLSEP--KEDQEAAELLSEPEEESERHILELEEVYDY 58
++ K+++L + + + + + LS+ KE + + + E SER I LE+ ++
Sbjct: 503 LSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEH 562
Query: 59 LYQP----SYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELK-IMCTVDHQDQ 113
L Q R I +K E + K+ +K + ++ E + I ++H +
Sbjct: 563 LNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKE 622
Query: 114 RDWIKDRVEQIK-EYHH-------LHQAVHAAKVILQVKESLGL-NGDFSVLNTLLNFT- 163
+ +R E+++ E HH L + + K+ + E+L N + N L T
Sbjct: 623 KG---ERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTL 679
Query: 164 DNFDD--FRRETLDQINQELIQAK-KLLQDISEARCKGLQALSLRKE 207
D+F + F+ E+L++ N +L + +L +++ +C ++ L+ E
Sbjct: 680 DSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLE 726
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 30.0 bits (66), Expect = 2.0
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 71 HQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEY--H 128
H L++ + L EID + + T++ EL + + +DQ +K R +I+ + +
Sbjct: 2874 HVTLEASQKELQEIDSGISTHLQELTNIYEELNVFERLFLEDQLKNLKIRTNRIQRFIQN 2933
Query: 129 HLHQAVHAAKVILQVKE---SLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQELIQAK 185
++ H K Q E +L D N LL +E + +E+ K
Sbjct: 2934 TCNEVEHKIKFCRQFHEKTSALQEEADSIQRNELL--------LNQEVNKGVKEEIYNLK 2985
Query: 186 KLLQDISEARCKGLQALSLRKEF 208
L I +C LQ L L+K F
Sbjct: 2986 DRLTAI---KCCILQVLKLKKVF 3005
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 30.0 bits (66), Expect = 2.0
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 71 HQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEY--H 128
H L++ + L EID + + T++ EL + + +DQ +K R +I+ + +
Sbjct: 2874 HVTLEASQKELQEIDSGISTHLQELTNIYEELNVFERLFLEDQLKNLKIRTNRIQRFIQN 2933
Query: 129 HLHQAVHAAKVILQVKE---SLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQELIQAK 185
++ H K Q E +L D N LL +E + +E+ K
Sbjct: 2934 TCNEVEHKIKFCRQFHEKTSALQEEADSIQRNELL--------LNQEVNKGVKEEIYNLK 2985
Query: 186 KLLQDISEARCKGLQALSLRKEF 208
L I +C LQ L L+K F
Sbjct: 2986 DRLTAI---KCCILQVLKLKKVF 3005
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,557,272
Number of Sequences: 37866
Number of extensions: 416753
Number of successful extensions: 2142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2096
Number of HSP's gapped (non-prelim): 103
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.