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Search of human proteins with 239745494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745494 PREDICTED: similar to NPIP-like protein
ENSP00000346774 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745494 PREDICTED: similar to NPIP-like protein ENSP0000034... 456 e-129
gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo sap... 389 e-109
gi|239745607 PREDICTED: nuclear pore complex interacting protein... 358 3e-99
gi|239745430 PREDICTED: hypothetical protein XP_002343465 [Homo ... 273 1e-73
gi|239745418 PREDICTED: similar to GPS, PLAT and transmembrane d... 273 1e-73
gi|239745416 PREDICTED: similar to GPS, PLAT and transmembrane d... 273 1e-73
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 268 4e-72
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 266 1e-71
gi|239745482 PREDICTED: hypothetical protein [Homo sapiens] 266 1e-71
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 266 1e-71
gi|239745469 PREDICTED: nuclear pore complex interacting protein... 203 1e-52
gi|239745475 PREDICTED: similar to NPIP-like protein ENSP0000028... 201 3e-52
gi|169212906 PREDICTED: NPIP-like protein ENSP00000283050 isofor... 185 2e-47
gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo sapi... 179 2e-45
gi|148596994 nuclear pore complex interacting protein [Homo sapi... 151 4e-37
gi|193290184 hypothetical protein LOC339047 [Homo sapiens] 148 3e-36
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 34 0.11
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 34 0.11
gi|239835767 developmental pluripotency associated 2 [Homo sapiens] 33 0.15
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 32 0.43
gi|157364937 OTU domain containing 6B [Homo sapiens] 32 0.43
gi|4506609 ribosomal protein L19 [Homo sapiens] 31 0.96
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|219555718 synaptonemal complex central element protein 1 isof... 30 1.2
gi|219555716 synaptonemal complex central element protein 1 isof... 30 1.2
gi|18640754 synaptonemal complex central element protein 1 isofo... 30 1.2
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 30 2.1
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.1
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.1
>gi|239745494 PREDICTED: similar to NPIP-like protein
ENSP00000346774 [Homo sapiens]
Length = 221
Score = 456 bits (1172), Expect = e-129
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MRLRFWLLIWLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSI 60
MRLRFWLLIWLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSI
Sbjct: 1 MRLRFWLLIWLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSI 60
Query: 61 CMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK 120
CMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK
Sbjct: 61 CMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK 120
Query: 121 QKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSLQLC 180
QKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSLQLC
Sbjct: 121 QKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSLQLC 180
Query: 181 AQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI 221
AQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
Sbjct: 181 AQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI 221
>gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo
sapiens]
Length = 224
Score = 389 bits (1000), Expect = e-109
Identities = 196/224 (87%), Positives = 201/224 (89%), Gaps = 3/224 (1%)
Query: 1 MRLR---FWLLIWLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGL 57
MR+R FWLL LLL FISHQ +SLLKTI WSRNGHDGSTDVQQRAWRSNR RQKGL
Sbjct: 1 MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL 60
Query: 58 RSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKT 117
RSICMHTKKRVSSF GNKIGLKDVITL RHVETKVRAKIRKRKVTTKIN HDKINGKRKT
Sbjct: 61 RSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKT 120
Query: 118 ARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSL 177
A+ QKMFQR QEL RRAEDYHK KIPPSARK LCNWVSL VFLAF HSLPGQDMDTFFSL
Sbjct: 121 AKNQKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSL 180
Query: 178 QLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI 221
QLCAQALQREMAER+AAY+ HSPIPVGNRV QKHLHPHPVGPLI
Sbjct: 181 QLCAQALQREMAERRAAYKPHSPIPVGNRVAQKHLHPHPVGPLI 224
>gi|239745607 PREDICTED: nuclear pore complex interacting
protein-like 2 [Homo sapiens]
Length = 265
Score = 358 bits (918), Expect = 3e-99
Identities = 179/199 (89%), Positives = 179/199 (89%), Gaps = 17/199 (8%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIFWSRNGHDGSTDVQQRAWRSNRSRQKG NKIGLKDVI
Sbjct: 84 VSFLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKG-----------------NKIGLKDVI 126
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 142
TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI
Sbjct: 127 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 186
Query: 143 PPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIP 202
PPSARK LCNWVSL VFLAFEHSLPGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIP
Sbjct: 187 PPSARKPLCNWVSLLVFLAFEHSLPGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIP 246
Query: 203 VGNRVVQKHLHPHPVGPLI 221
VGNRVVQKHLHPHPVGPLI
Sbjct: 247 VGNRVVQKHLHPHPVGPLI 265
>gi|239745430 PREDICTED: hypothetical protein XP_002343465 [Homo
sapiens]
Length = 317
Score = 273 bits (697), Expect = 1e-73
Identities = 149/233 (63%), Positives = 162/233 (69%), Gaps = 53/233 (22%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIF S+NGHDGSTDVQQRA RSN RQ+G+ KI L+D+
Sbjct: 84 VSFLKTIFPSQNGHDGSTDVQQRARRSNCRRQEGI-----------------KIVLEDIF 126
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQ--------------------- 121
TL R VETKVRAKIRK KVTTK+NRHDKINGKRKTA++
Sbjct: 127 TLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEA 186
Query: 122 ---------------KMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSL 166
+MFQRAQ LRRRAEDY++CKI PSARK LCN VSL VFLAF HSL
Sbjct: 187 EENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVSLLVFLAFGHSL 246
Query: 167 PGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGP 219
PGQDMDTFFSL+LCAQALQREMAERKAAY+HHSPIPVGNRV QKHLHPHPVGP
Sbjct: 247 PGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIPVGNRVAQKHLHPHPVGP 299
>gi|239745418 PREDICTED: similar to GPS, PLAT and transmembrane
domain-containing protein FLJ00285 [Homo sapiens]
Length = 317
Score = 273 bits (697), Expect = 1e-73
Identities = 149/233 (63%), Positives = 162/233 (69%), Gaps = 53/233 (22%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIF S+NGHDGSTDVQQRA RSNR RQ+G+ KI L+D+
Sbjct: 84 VSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI-----------------KIVLEDIF 126
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQ--------------------- 121
TL R VETKVRAKI K KVTTK+NRHDKINGKRKTA++
Sbjct: 127 TLWRQVETKVRAKICKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEA 186
Query: 122 ---------------KMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSL 166
+MFQRAQ LRRRAEDY++CKI PSARK LCN VSL VFLAF HSL
Sbjct: 187 EENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVSLLVFLAFGHSL 246
Query: 167 PGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGP 219
PGQDMDTFFSL+LCAQALQREMAERKAAY+HHSPIPVGNRV QKHLHPHPVGP
Sbjct: 247 PGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIPVGNRVAQKHLHPHPVGP 299
>gi|239745416 PREDICTED: similar to GPS, PLAT and transmembrane
domain-containing protein FLJ00285 [Homo sapiens]
Length = 317
Score = 273 bits (697), Expect = 1e-73
Identities = 149/233 (63%), Positives = 162/233 (69%), Gaps = 53/233 (22%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIF S+NGHDGSTDVQQRA RSNR RQ+G+ KI L+D+
Sbjct: 84 VSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI-----------------KIVLEDIF 126
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQ--------------------- 121
TL R VETKVRAKI K KVTTK+NRHDKINGKRKTA++
Sbjct: 127 TLWRQVETKVRAKICKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEA 186
Query: 122 ---------------KMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSL 166
+MFQRAQ LRRRAEDY++CKI PSARK LCN VSL VFLAF HSL
Sbjct: 187 EENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVSLLVFLAFGHSL 246
Query: 167 PGQDMDTFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGP 219
PGQDMDTFFSL+LCAQALQREMAERKAAY+HHSPIPVGNRV QKHLHPHPVGP
Sbjct: 247 PGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIPVGNRVAQKHLHPHPVGP 299
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 268 bits (684), Expect = 4e-72
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VSLLKTIFWSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSFRGNKIGLKDVI
Sbjct: 84 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 142
TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203
Query: 143 PPSARKALCNWVSL 156
PPSARKALCNWV +
Sbjct: 204 PPSARKALCNWVRM 217
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 266 bits (679), Expect = 1e-71
Identities = 129/134 (96%), Positives = 131/134 (97%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VSLLKTIFWSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSFRGNKIGLKDVI
Sbjct: 84 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 142
TLRRHVETKVRAKIRKRKVTTKIN HDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203
Query: 143 PPSARKALCNWVSL 156
PPSARKALCNWV +
Sbjct: 204 PPSARKALCNWVRM 217
>gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 266 bits (679), Expect = 1e-71
Identities = 137/169 (81%), Positives = 142/169 (84%), Gaps = 6/169 (3%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIFWSRNGHDGS DVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI
Sbjct: 119 VSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 178
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 142
TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI
Sbjct: 179 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 238
Query: 143 PPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSLQLCAQALQREMAER 191
PPSARK LCNWV + A EH + L L A+ L+ M +
Sbjct: 239 PPSARKPLCNWVRM---AAAEHR---HSSGLPYWLYLTAETLKNRMGRQ 281
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 266 bits (679), Expect = 1e-71
Identities = 129/134 (96%), Positives = 131/134 (97%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VSLLKTIFWSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSFRGNKIGLKDVI
Sbjct: 84 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 142
TLRRHVETKVRAKIRKRKVTTKIN HDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203
Query: 143 PPSARKALCNWVSL 156
PPSARKALCNWV +
Sbjct: 204 PPSARKALCNWVRM 217
>gi|239745469 PREDICTED: nuclear pore complex interacting
protein-like 1 [Homo sapiens]
Length = 371
Score = 203 bits (516), Expect = 1e-52
Identities = 122/218 (55%), Positives = 129/218 (59%), Gaps = 59/218 (27%)
Query: 10 WLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVS 69
WL G + VS LKTIFWSRNGHDGS DVQQRAWRSNRSRQKG
Sbjct: 9 WLSGGCKTWHSAWVSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKG------------- 55
Query: 70 SFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK--------- 120
NKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK
Sbjct: 56 ----NKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKHIRKLSMKE 111
Query: 121 ---------------------------QKMFQRAQELRRRAEDYHKCKIPPSARKALCNW 153
+KMFQRAQELRRRAEDYHKCKIPPSARK LCNW
Sbjct: 112 CEHAEKERQVSEAEENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKCKIPPSARKPLCNW 171
Query: 154 VSLFVFLAFEHSLPGQDMDTFFSLQLCAQALQREMAER 191
V + A EH + L L A+ L+ M +
Sbjct: 172 VRM---AAAEHC---HSSGLPYWLYLTAETLKNRMGRQ 203
>gi|239745475 PREDICTED: similar to NPIP-like protein
ENSP00000283050 isoform 1 [Homo sapiens]
Length = 385
Score = 201 bits (512), Expect = 3e-52
Identities = 119/205 (58%), Positives = 125/205 (60%), Gaps = 59/205 (28%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIFWSRNGHDGS DVQQRAWRSNRSRQKG NKIGLKDVI
Sbjct: 36 VSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKG-----------------NKIGLKDVI 78
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK---------------------- 120
TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK
Sbjct: 79 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKHIRKLSMKECEHAEKERQVSEA 138
Query: 121 --------------QKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSL 166
+KMFQRAQELRRRAEDYHKCKIPPSARK LCNWV + A EH
Sbjct: 139 EENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM---AAAEHR- 194
Query: 167 PGQDMDTFFSLQLCAQALQREMAER 191
+ L L A+ L+ M +
Sbjct: 195 --HSSGLPYWLYLTAETLKNRMGRQ 217
>gi|169212906 PREDICTED: NPIP-like protein ENSP00000283050 isoform 3
[Homo sapiens]
Length = 363
Score = 185 bits (470), Expect = 2e-47
Identities = 104/170 (61%), Positives = 109/170 (64%), Gaps = 53/170 (31%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
+SLLKTI WSRNGHDGSTDVQQRAWRSNR RQ+G NKIGLKDVI
Sbjct: 65 MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQEG-----------------NKIGLKDVI 107
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK---------------------- 120
TL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+
Sbjct: 108 TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNHIRKLSMKECEHAEKERQVSEA 167
Query: 121 --------------QKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSL 156
+KMFQRAQELRRRAEDYHK KIPPSARK LCNWV +
Sbjct: 168 EENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKRKIPPSARKPLCNWVRM 217
>gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo
sapiens]
Length = 380
Score = 179 bits (454), Expect = 2e-45
Identities = 103/168 (61%), Positives = 107/168 (63%), Gaps = 51/168 (30%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
+S LKTIF S NGHD STDVQQRA RSNR RQ+G NKIGLKDVI
Sbjct: 65 LSFLKTIFQSENGHDVSTDVQQRARRSNRRRQEG-----------------NKIGLKDVI 107
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQK-------------------- 122
TLRRHVETK RAKIRK KVTTKIN HDKINGKRKTA+KQK
Sbjct: 108 TLRRHVETKGRAKIRKMKVTTKINHHDKINGKRKTAKKQKLSVKECEHAEKERQVSEAEE 167
Query: 123 --------------MFQRAQELRRRAEDYHKCKIPPSARKALCNWVSL 156
MFQRAQELRRRAEDYHKCKIPPSARKALCNWV +
Sbjct: 168 NGKLDMKEIHTYMKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRM 215
>gi|148596994 nuclear pore complex interacting protein [Homo
sapiens]
Length = 350
Score = 151 bits (382), Expect = 4e-37
Identities = 93/178 (52%), Positives = 105/178 (58%), Gaps = 56/178 (31%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIF S+NGHDGSTDVQQRA RSNR RQ+G+ KI L+D+
Sbjct: 65 VSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI-----------------KIVLEDIF 107
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQ--------------------- 121
TL R VETKVRAKIRK KVTTK+NRHDKINGKRKTA++
Sbjct: 108 TLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEA 167
Query: 122 ---------------KMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEH 164
+MFQRAQ LRRRAEDY++CKI PSARK LCN V + A EH
Sbjct: 168 EENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRM---AAVEH 222
>gi|193290184 hypothetical protein LOC339047 [Homo sapiens]
Length = 369
Score = 148 bits (374), Expect = 3e-36
Identities = 92/178 (51%), Positives = 104/178 (58%), Gaps = 56/178 (31%)
Query: 23 VSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVI 82
VS LKTIF S+NGHDGSTDVQQRA RSN RQ+G+ KI L+D+
Sbjct: 65 VSFLKTIFPSQNGHDGSTDVQQRARRSNCRRQEGI-----------------KIVLEDIF 107
Query: 83 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQ--------------------- 121
TL R VETKVRAKIRK KVTTK+NRHDKINGKRKTA++
Sbjct: 108 TLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEA 167
Query: 122 ---------------KMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEH 164
+MFQRAQ LRRRAEDY++CKI PSARK LCN V + A EH
Sbjct: 168 EENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRM---AAVEH 222
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 33.9 bits (76), Expect = 0.11
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 48 RSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINR 107
+ N++R KG + KKR SS R K R ++ R++ RKR +K +R
Sbjct: 1804 KKNKNRDKGEKE-----KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHR 1858
Query: 108 HDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSAR 147
+ R R++ R++ RR+ K K P R
Sbjct: 1859 SQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHR 1898
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 33.9 bits (76), Expect = 0.11
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 48 RSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINR 107
+ N++R KG + KKR SS R K R ++ R++ RKR +K +R
Sbjct: 1804 KKNKNRDKGEKE-----KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHR 1858
Query: 108 HDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSAR 147
+ R R++ R++ RR+ K K P R
Sbjct: 1859 SQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHR 1898
>gi|239835767 developmental pluripotency associated 2 [Homo sapiens]
Length = 298
Score = 33.5 bits (75), Expect = 0.15
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 70 SFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQE 129
S G KI + + L RH + R + + T++ R + KRK K+ QR+ E
Sbjct: 110 STNGKKIEV--YLRLHRHAYPEQRQDMPEMSQETRLQRCSR---KRKAVTKRARLQRSYE 164
Query: 130 LRRRAEDYHKCKIPPSARKA-LCNWVSL 156
+ RAE+ + ++ SA A L +W +
Sbjct: 165 MNERAEETNTVEVITSAPGAMLASWARI 192
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 33.1 bits (74), Expect = 0.19
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 43 QQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVR----AKIRK 98
++R + R+K R KKR RG + K R E K R K R+
Sbjct: 80 KEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRR 139
Query: 99 RKVTTKINRHDKINGKRKTARKQKMFQRAQELRRR 133
+K K + +K GKR+ RK++ + ++ R R
Sbjct: 140 KKKRRKERKREKERGKRERKRKKRKKEEREKKRER 174
Score = 31.2 bits (69), Expect = 0.73
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 43 QQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVT 102
++R R R++G + KKR RG + K ++ E R K R+++
Sbjct: 46 RKREREKERKRERGKKE----KKKRKKRERGKERERKRKEREKQRKER--REKERRKRKK 99
Query: 103 TKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARK 148
K R K G+R+ +K++ +R +E ++R E K + RK
Sbjct: 100 EKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRK 145
Score = 28.1 bits (61), Expect = 6.2
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 48 RSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINR 107
R N+ R++ R K+R R + G ++ +R E + + + R RK K R
Sbjct: 125 RENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKK-ER 183
Query: 108 HDKINGKRKTARKQKMFQRAQELRRRAED 136
K +RK RK++ ++ + + R D
Sbjct: 184 ERKERRERKKERKKERRKKKERKKDRKTD 212
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.43
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 43 QQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVT 102
QQ+A +N R+ C++ K+++ R I + RH++ K + ++ K
Sbjct: 981 QQKAELANIERE------CLNNKQQLMRAREAAIWELE----ERHLQEKHQLLKQQLKDQ 1030
Query: 103 TKINRHDKINGKRK-TARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLA 161
+ RH + K T + Q+ QR E + + + ++P R +++F
Sbjct: 1031 YFMQRHQLLKRHEKETEQMQRYNQRLIEELKNRQTQERARLPKIQRSEAKTRMAMFKKSL 1090
Query: 162 FEHSLPGQDMDTFFSLQLCAQALQREMAERKAAYRHH 198
+S D D Q AQ +R+ ER A ++ H
Sbjct: 1091 RINSTATPDQDRDKIKQFAAQEEKRQKNERMAQHQKH 1127
>gi|157364937 OTU domain containing 6B [Homo sapiens]
Length = 323
Score = 32.0 bits (71), Expect = 0.43
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 41 DVQQRAWRSNRSRQKGLRSICMHTKKRV--SSFRGNKIGLKDVITLRRHVETKVRAKIRK 98
D +++ R +R +K L++ K V + + K +DV L + +E K R ++ +
Sbjct: 40 DEEEQLLRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQ 99
Query: 99 RKVTTKINRHDKI----------NGKRKTARKQKMFQRAQELRRRAED 136
K+TTK N+ D + N + ++ QK ++ L + E+
Sbjct: 100 LKLTTKENKIDSVAVNISNLVLENQPPRISKAQKRREKKAALEKEREE 147
>gi|4506609 ribosomal protein L19 [Homo sapiens]
Length = 196
Score = 30.8 bits (68), Expect = 0.96
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 78 LKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRR 132
+KD + +R+ V RA+ RK + + RH I GKRK +M ++ +RR
Sbjct: 45 IKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGI-GKRKGTANARMPEKVTWMRR 98
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 43 QQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVT 102
++ AW+ R ++ TKK+ K K + +TK R K+ T
Sbjct: 19 KESAWKRGRKKKT--------TKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTT 70
Query: 103 TKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCK 141
T +K K K K+K ++ +E +++ + K K
Sbjct: 71 TTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109
>gi|219555718 synaptonemal complex central element protein 1 isoform
4 [Homo sapiens]
Length = 351
Score = 30.4 bits (67), Expect = 1.2
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 41 DVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVIT--------LRRHVETKV 92
+VQQ ++N+ + R+IC +K + S G K+ LK++++ LR H + K
Sbjct: 62 EVQQAKKKANKDLGEA-RTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLHCQEKE 120
Query: 93 RAKIRKRKVTTKINRHDKINGKRKTARKQKMFQR---------AQELRRRAEDYHKCKIP 143
RK + + ++I+ ++K QR ++L + +D +P
Sbjct: 121 SEAHRKHTMLQECK--ERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFHMP 178
Query: 144 PSARKALC 151
K +C
Sbjct: 179 ERLAKEIC 186
>gi|219555716 synaptonemal complex central element protein 1 isoform
3 [Homo sapiens]
Length = 318
Score = 30.4 bits (67), Expect = 1.2
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 41 DVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVIT--------LRRHVETKV 92
+VQQ ++N+ + R+IC +K + S G K+ LK++++ LR H + K
Sbjct: 62 EVQQAKKKANKDLGEA-RTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLHCQEKE 120
Query: 93 RAKIRKRKVTTKINRHDKINGKRKTARKQKMFQR---------AQELRRRAEDYHKCKIP 143
RK + + ++I+ ++K QR ++L + +D +P
Sbjct: 121 SEAHRKHTMLQECK--ERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFHMP 178
Query: 144 PSARKALC 151
K +C
Sbjct: 179 ERLAKEIC 186
>gi|18640754 synaptonemal complex central element protein 1 isoform
1 [Homo sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 1.2
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 41 DVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLKDVIT--------LRRHVETKV 92
+VQQ ++N+ + R+IC +K + S G K+ LK++++ LR H + K
Sbjct: 26 EVQQAKKKANKDLGEA-RTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLHCQEKE 84
Query: 93 RAKIRKRKVTTKINRHDKINGKRKTARKQKMFQR---------AQELRRRAEDYHKCKIP 143
RK + + ++I+ ++K QR ++L + +D +P
Sbjct: 85 SEAHRKHTMLQECK--ERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFHMP 142
Query: 144 PSARKALC 151
K +C
Sbjct: 143 ERLAKEIC 150
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 88 VETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAED 136
++TK++ + + ++VT + ++IN + TA+K+K+ EL++ +D
Sbjct: 913 IKTKIQLEAKIKEVTERAEDEEEINAE-LTAKKRKLEDECSELKKDIDD 960
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 88 VETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAED 136
++TK++ + + ++VT + ++IN + TA+K+K+ EL++ +D
Sbjct: 915 IKTKIQLEAKIKEVTERAEDEEEINAE-LTAKKRKLEDECSELKKDIDD 962
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 88 VETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAED 136
++TK++ + + ++VT + ++IN + TA+K+K+ EL++ +D
Sbjct: 915 IKTKIQLEAKIKEVTERAEDEEEINAE-LTAKKRKLEDECSELKKDIDD 962
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,843,754
Number of Sequences: 37866
Number of extensions: 363536
Number of successful extensions: 1589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 111
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.