BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens] (143 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens] 285 9e-78 gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens] 285 9e-78 gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens] 285 9e-78 gi|110347568 centrosomal protein 152kDa [Homo sapiens] 31 0.31 gi|24431933 reticulon 4 isoform B [Homo sapiens] 31 0.40 gi|47519490 reticulon 4 isoform D [Homo sapiens] 31 0.40 gi|24431935 reticulon 4 isoform A [Homo sapiens] 31 0.40 gi|23238248 sorting nexin 16 isoform b [Homo sapiens] 29 1.5 gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 28 2.0 gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 28 2.0 gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 28 2.0 gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 28 2.0 gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 28 2.0 gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens] 28 2.6 gi|209954825 minichromosome maintenance complex component-like i... 28 3.4 gi|209954823 minichromosome maintenance complex component-like i... 28 3.4 gi|209954821 minichromosome maintenance complex component-like i... 28 3.4 gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens] 27 4.4 gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens] 27 4.4 gi|23238244 sorting nexin 16 isoform a [Homo sapiens] 27 4.4 gi|23238246 sorting nexin 16 isoform a [Homo sapiens] 27 4.4 gi|55749678 ninein-like [Homo sapiens] 27 5.8 gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 27 7.6 gi|22024390 potassium voltage-gated channel, subfamily H, member... 27 7.6 gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 7.6 gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 7.6 gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 7.6 gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 26 9.9 gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 26 9.9 gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi... 26 9.9 >gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens] Length = 143 Score = 285 bits (729), Expect = 9e-78 Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS Sbjct: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 Query: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT Sbjct: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 DGGSHRGVLKLKGKKLRGGYGLA Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 >gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens] Length = 143 Score = 285 bits (729), Expect = 9e-78 Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS Sbjct: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 Query: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT Sbjct: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 DGGSHRGVLKLKGKKLRGGYGLA Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 >gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens] Length = 143 Score = 285 bits (729), Expect = 9e-78 Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS Sbjct: 1 MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60 Query: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT Sbjct: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120 Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 DGGSHRGVLKLKGKKLRGGYGLA Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143 >gi|110347568 centrosomal protein 152kDa [Homo sapiens] Length = 1654 Score = 31.2 bits (69), Expect = 0.31 Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 14 LNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPSS-GLKFTGLPAVP 72 ++L+F + P + + ++ D E++ + L+ + D+L+++ SS L+++ Sbjct: 1 MSLDFGSVALPVQNEDEEYDEEDYEREKELQQLLTDLPHDMLDDDLSSPELQYSDCSEDG 60 Query: 73 LTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQR 112 G +Q +Q++ K +SV G E+ S G++ Sbjct: 61 TDGQPHHPEQLEMSWNEQMLPKSQSVNGYNEIQSLYAGEK 100 >gi|24431933 reticulon 4 isoform B [Homo sapiens] Length = 373 Score = 30.8 bits (68), Expect = 0.40 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 EE+ + EE+D + L + ++LE +P++GL +P P G L Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78 >gi|47519490 reticulon 4 isoform D [Homo sapiens] Length = 392 Score = 30.8 bits (68), Expect = 0.40 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 EE+ + EE+D + L + ++LE +P++GL +P P G L Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78 >gi|24431935 reticulon 4 isoform A [Homo sapiens] Length = 1192 Score = 30.8 bits (68), Expect = 0.40 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 EE+ + EE+D + L + ++LE +P++GL +P P G L Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78 >gi|23238248 sorting nexin 16 isoform b [Homo sapiens] Length = 315 Score = 28.9 bits (63), Expect = 1.5 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 27 SLKKREEQSDNPEEQDW---PKTLSLIGGDILEEEPSSGLK 64 S + R+ + NPE +W P T +++G +++EE LK Sbjct: 87 STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEERAKFTLK 127 >gi|192807316 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform D [Homo sapiens] Length = 1616 Score = 28.5 bits (62), Expect = 2.0 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 22 LFPRGSLKKRE-EQSDNPEEQDWPKTLSLIGGDILEE 57 +F RGS ++E + SD+ E+ W KTL I LEE Sbjct: 1333 MFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEE 1369 >gi|192807314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform C [Homo sapiens] Length = 1617 Score = 28.5 bits (62), Expect = 2.0 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 22 LFPRGSLKKRE-EQSDNPEEQDWPKTLSLIGGDILEE 57 +F RGS ++E + SD+ E+ W KTL I LEE Sbjct: 1333 MFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEE 1369 >gi|18375650 protein tyrosine phosphatase, non-receptor type 13 isoform 4 [Homo sapiens] Length = 2490 Score = 28.5 bits (62), Expect = 2.0 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 76 NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135 +DL + + R+ I+N + Q VAE+V G+ H R+D S GV KL K Sbjct: 971 HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025 >gi|18375646 protein tyrosine phosphatase, non-receptor type 13 isoform 1 [Homo sapiens] Length = 2485 Score = 28.5 bits (62), Expect = 2.0 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 76 NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135 +DL + + R+ I+N + Q VAE+V G+ H R+D S GV KL K Sbjct: 971 HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025 >gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform 2 [Homo sapiens] Length = 2466 Score = 28.5 bits (62), Expect = 2.0 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 76 NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135 +DL + + R+ I+N + Q VAE+V G+ H R+D S GV KL K Sbjct: 971 HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025 >gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens] Length = 107 Score = 28.1 bits (61), Expect = 2.6 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%) Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQI 91 EEQ+ + E + W I + E + +F GL + G L + RRK+ Sbjct: 24 EEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL-----IQPRRKKA 78 Query: 92 INKKESVQGVAEVVSSVKGQREHFSEGRTD 121 + + QG+ G+R F+EGR D Sbjct: 79 YQLEHTFQGLL-------GKRSLFTEGRED 101 >gi|209954825 minichromosome maintenance complex component-like isoform c [Homo sapiens] Length = 590 Score = 27.7 bits (60), Expect = 3.4 Identities = 17/34 (50%), Positives = 20/34 (58%) Query: 45 KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 KTLSLIG E + + LK T LP +P G DL Sbjct: 82 KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115 >gi|209954823 minichromosome maintenance complex component-like isoform b [Homo sapiens] Length = 632 Score = 27.7 bits (60), Expect = 3.4 Identities = 17/34 (50%), Positives = 20/34 (58%) Query: 45 KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 KTLSLIG E + + LK T LP +P G DL Sbjct: 82 KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115 >gi|209954821 minichromosome maintenance complex component-like isoform a [Homo sapiens] Length = 681 Score = 27.7 bits (60), Expect = 3.4 Identities = 17/34 (50%), Positives = 20/34 (58%) Query: 45 KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78 KTLSLIG E + + LK T LP +P G DL Sbjct: 82 KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115 >gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens] Length = 574 Score = 27.3 bits (59), Expect = 4.4 Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 8 FLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEE 58 F+++ ++N F +LFP + N WPK I +L EE Sbjct: 506 FIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREE 556 >gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens] Length = 565 Score = 27.3 bits (59), Expect = 4.4 Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 8 FLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEE 58 F+++ ++N F +LFP + N WPK I +L EE Sbjct: 497 FIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREE 547 >gi|23238244 sorting nexin 16 isoform a [Homo sapiens] Length = 344 Score = 27.3 bits (59), Expect = 4.4 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 27 SLKKREEQSDNPEEQDW---PKTLSLIGGDILEE 57 S + R+ + NPE +W P T +++G +++EE Sbjct: 87 STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEE 120 >gi|23238246 sorting nexin 16 isoform a [Homo sapiens] Length = 344 Score = 27.3 bits (59), Expect = 4.4 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 27 SLKKREEQSDNPEEQDW---PKTLSLIGGDILEE 57 S + R+ + NPE +W P T +++G +++EE Sbjct: 87 STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEE 120 >gi|55749678 ninein-like [Homo sapiens] Length = 1382 Score = 26.9 bits (58), Expect = 5.8 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 50 IGGDILEEEP------SSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAE 103 + GDI+ +EP ++GL+ G +PL G + Q + + S +G AE Sbjct: 914 VDGDIVPKEPEPFGASAAGLEQPGARELPLLGTERDASQTQPRMWEPPLRPAASCRGQAE 973 Query: 104 VVSSVKGQR-EHFSEGRTDGGSHR 126 + +++ +R +S G + S + Sbjct: 974 RLQAIQEERARSWSRGTQEQASEQ 997 >gi|226246554 hypothetical protein LOC643677 [Homo sapiens] Length = 7081 Score = 26.6 bits (57), Expect = 7.6 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Query: 95 KESVQGVAEVVSSVKGQREHFSEGRTD 121 KE++ GV + S+VK ++H S+G+ D Sbjct: 3640 KETIDGV--ISSNVKSTKQHISQGKND 3664 >gi|22024390 potassium voltage-gated channel, subfamily H, member 5 isoform 1 [Homo sapiens] Length = 988 Score = 26.6 bits (57), Expect = 7.6 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 76 NDLQKQQAFEGRRKQIINKKESVQG-VAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGK 134 +D++K++ R+K + V V ++ K Q+E ++G T G R L+++ + Sbjct: 680 SDVKKEEEERLRQKNEVTLSIPVDHPVRKLFQKFKQQKELRNQGSTQGDPERNQLQVESR 739 Query: 135 KLRGG 139 L+ G Sbjct: 740 SLQNG 744 >gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 26.6 bits (57), Expect = 7.6 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Query: 95 KESVQGVAEVVSSVKGQREHFSEGRTD 121 KE++ GV + S+VK ++H S+G+ D Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593 >gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 26.6 bits (57), Expect = 7.6 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Query: 95 KESVQGVAEVVSSVKGQREHFSEGRTD 121 KE++ GV + S+VK ++H S+G+ D Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593 >gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 26.6 bits (57), Expect = 7.6 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Query: 95 KESVQGVAEVVSSVKGQREHFSEGRTD 121 KE++ GV + S+VK ++H S+G+ D Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593 >gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo sapiens] Length = 5033 Score = 26.2 bits (56), Expect = 9.9 Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 74 TGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLK 132 T + ++ + EG + K+E + A+ + + E +EG + G G+L++K Sbjct: 1872 TEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930 >gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo sapiens] Length = 5038 Score = 26.2 bits (56), Expect = 9.9 Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 74 TGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLK 132 T + ++ + EG + K+E + A+ + + E +EG + G G+L++K Sbjct: 1872 TEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930 >gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapiens] Length = 253 Score = 26.2 bits (56), Expect = 9.9 Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 61 SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKG 110 SG K + +PLT L+ G KQ+ N+ ++ AE ++ VKG Sbjct: 177 SGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKG 226 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,647,191 Number of Sequences: 37866 Number of extensions: 265449 Number of successful extensions: 603 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 582 Number of HSP's gapped (non-prelim): 40 length of query: 143 length of database: 18,247,518 effective HSP length: 92 effective length of query: 51 effective length of database: 14,763,846 effective search space: 752956146 effective search space used: 752956146 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.