Guide to the Human Genome
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Search of human proteins with 239745445

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens]
         (143 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens]          285   9e-78
gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens]          285   9e-78
gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens]          285   9e-78
gi|110347568 centrosomal protein 152kDa [Homo sapiens]                 31   0.31 
gi|24431933 reticulon 4 isoform B [Homo sapiens]                       31   0.40 
gi|47519490 reticulon 4 isoform D [Homo sapiens]                       31   0.40 
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       31   0.40 
gi|23238248 sorting nexin 16 isoform b [Homo sapiens]                  29   1.5  
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    28   2.0  
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    28   2.0  
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i...    28   2.0  
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i...    28   2.0  
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is...    28   2.0  
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]               28   2.6  
gi|209954825 minichromosome maintenance complex component-like i...    28   3.4  
gi|209954823 minichromosome maintenance complex component-like i...    28   3.4  
gi|209954821 minichromosome maintenance complex component-like i...    28   3.4  
gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]       27   4.4  
gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]       27   4.4  
gi|23238244 sorting nexin 16 isoform a [Homo sapiens]                  27   4.4  
gi|23238246 sorting nexin 16 isoform a [Homo sapiens]                  27   4.4  
gi|55749678 ninein-like [Homo sapiens]                                 27   5.8  
gi|226246554 hypothetical protein LOC643677 [Homo sapiens]             27   7.6  
gi|22024390 potassium voltage-gated channel, subfamily H, member...    27   7.6  
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap...    27   7.6  
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap...    27   7.6  
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap...    27   7.6  
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ...    26   9.9  
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ...    26   9.9  
gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi...    26   9.9  

>gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score =  285 bits (729), Expect = 9e-78
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60
           MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS
Sbjct: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60

Query: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120
           SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT
Sbjct: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120

Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143
           DGGSHRGVLKLKGKKLRGGYGLA
Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143


>gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score =  285 bits (729), Expect = 9e-78
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60
           MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS
Sbjct: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60

Query: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120
           SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT
Sbjct: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120

Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143
           DGGSHRGVLKLKGKKLRGGYGLA
Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143


>gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score =  285 bits (729), Expect = 9e-78
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60
           MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS
Sbjct: 1   MEIMADLFLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPS 60

Query: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120
           SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT
Sbjct: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRT 120

Query: 121 DGGSHRGVLKLKGKKLRGGYGLA 143
           DGGSHRGVLKLKGKKLRGGYGLA
Sbjct: 121 DGGSHRGVLKLKGKKLRGGYGLA 143


>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
          Length = 1654

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 14  LNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEEPSS-GLKFTGLPAVP 72
           ++L+F  +  P  +  +  ++ D   E++  + L+ +  D+L+++ SS  L+++      
Sbjct: 1   MSLDFGSVALPVQNEDEEYDEEDYEREKELQQLLTDLPHDMLDDDLSSPELQYSDCSEDG 60

Query: 73  LTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQR 112
             G     +Q      +Q++ K +SV G  E+ S   G++
Sbjct: 61  TDGQPHHPEQLEMSWNEQMLPKSQSVNGYNEIQSLYAGEK 100


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
          EE+ +  EE+D  + L  +  ++LE +P++GL    +P  P  G  L
Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
          EE+ +  EE+D  + L  +  ++LE +P++GL    +P  P  G  L
Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 32 EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
          EE+ +  EE+D  + L  +  ++LE +P++GL    +P  P  G  L
Sbjct: 34 EEEEEEEEEEDEDEDLEEL--EVLERKPAAGLSAAPVPTAPAAGAPL 78


>gi|23238248 sorting nexin 16 isoform b [Homo sapiens]
          Length = 315

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 27  SLKKREEQSDNPEEQDW---PKTLSLIGGDILEEEPSSGLK 64
           S + R+ +  NPE  +W   P T +++G +++EE     LK
Sbjct: 87  STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEERAKFTLK 127


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 22   LFPRGSLKKRE-EQSDNPEEQDWPKTLSLIGGDILEE 57
            +F RGS  ++E + SD+  E+ W KTL  I    LEE
Sbjct: 1333 MFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEE 1369


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 22   LFPRGSLKKRE-EQSDNPEEQDWPKTLSLIGGDILEE 57
            +F RGS  ++E + SD+  E+ W KTL  I    LEE
Sbjct: 1333 MFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEE 1369


>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
            isoform 4 [Homo sapiens]
          Length = 2490

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 76   NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135
            +DL +   +  R+  I+N +   Q VAE+V    G+  H    R+D  S  GV KL   K
Sbjct: 971  HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025


>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
            isoform 1 [Homo sapiens]
          Length = 2485

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 76   NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135
            +DL +   +  R+  I+N +   Q VAE+V    G+  H    R+D  S  GV KL   K
Sbjct: 971  HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025


>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
            2 [Homo sapiens]
          Length = 2466

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 76   NDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGKK 135
            +DL +   +  R+  I+N +   Q VAE+V    G+  H    R+D  S  GV KL   K
Sbjct: 971  HDLSQASLYPHRKNVIVNMEPPPQTVAELV----GKPSH-QMSRSDAESLAGVTKLNNSK 1025


>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
          Length = 107

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 32  EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQI 91
           EEQ+ + E + W      I   + E +     +F GL    + G  L      + RRK+ 
Sbjct: 24  EEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL-----IQPRRKKA 78

Query: 92  INKKESVQGVAEVVSSVKGQREHFSEGRTD 121
              + + QG+        G+R  F+EGR D
Sbjct: 79  YQLEHTFQGLL-------GKRSLFTEGRED 101


>gi|209954825 minichromosome maintenance complex component-like
           isoform c [Homo sapiens]
          Length = 590

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 45  KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
           KTLSLIG    E + +  LK T LP +P  G DL
Sbjct: 82  KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115


>gi|209954823 minichromosome maintenance complex component-like
           isoform b [Homo sapiens]
          Length = 632

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 45  KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
           KTLSLIG    E + +  LK T LP +P  G DL
Sbjct: 82  KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115


>gi|209954821 minichromosome maintenance complex component-like
           isoform a [Homo sapiens]
          Length = 681

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 45  KTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDL 78
           KTLSLIG    E + +  LK T LP +P  G DL
Sbjct: 82  KTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDL 115


>gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]
          Length = 574

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 8   FLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEE 58
           F+++ ++N  F  +LFP    +       N     WPK    I   +L EE
Sbjct: 506 FIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREE 556


>gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]
          Length = 565

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 8   FLRRAALNLEFSHLLFPRGSLKKREEQSDNPEEQDWPKTLSLIGGDILEEE 58
           F+++ ++N  F  +LFP    +       N     WPK    I   +L EE
Sbjct: 497 FIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREE 547


>gi|23238244 sorting nexin 16 isoform a [Homo sapiens]
          Length = 344

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 27  SLKKREEQSDNPEEQDW---PKTLSLIGGDILEE 57
           S + R+ +  NPE  +W   P T +++G +++EE
Sbjct: 87  STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEE 120


>gi|23238246 sorting nexin 16 isoform a [Homo sapiens]
          Length = 344

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 27  SLKKREEQSDNPEEQDW---PKTLSLIGGDILEE 57
           S + R+ +  NPE  +W   P T +++G +++EE
Sbjct: 87  STRPRDTEEQNPETVNWEDRPSTPTILGYEVMEE 120


>gi|55749678 ninein-like [Homo sapiens]
          Length = 1382

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 50  IGGDILEEEP------SSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAE 103
           + GDI+ +EP      ++GL+  G   +PL G +    Q      +  +    S +G AE
Sbjct: 914 VDGDIVPKEPEPFGASAAGLEQPGARELPLLGTERDASQTQPRMWEPPLRPAASCRGQAE 973

Query: 104 VVSSVKGQR-EHFSEGRTDGGSHR 126
            + +++ +R   +S G  +  S +
Sbjct: 974 RLQAIQEERARSWSRGTQEQASEQ 997


>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
          Length = 7081

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 95   KESVQGVAEVVSSVKGQREHFSEGRTD 121
            KE++ GV  + S+VK  ++H S+G+ D
Sbjct: 3640 KETIDGV--ISSNVKSTKQHISQGKND 3664


>gi|22024390 potassium voltage-gated channel, subfamily H, member 5
           isoform 1 [Homo sapiens]
          Length = 988

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 76  NDLQKQQAFEGRRKQIINKKESVQG-VAEVVSSVKGQREHFSEGRTDGGSHRGVLKLKGK 134
           +D++K++    R+K  +     V   V ++    K Q+E  ++G T G   R  L+++ +
Sbjct: 680 SDVKKEEEERLRQKNEVTLSIPVDHPVRKLFQKFKQQKELRNQGSTQGDPERNQLQVESR 739

Query: 135 KLRGG 139
            L+ G
Sbjct: 740 SLQNG 744


>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 95   KESVQGVAEVVSSVKGQREHFSEGRTD 121
            KE++ GV  + S+VK  ++H S+G+ D
Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593


>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 95   KESVQGVAEVVSSVKGQREHFSEGRTD 121
            KE++ GV  + S+VK  ++H S+G+ D
Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593


>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 95   KESVQGVAEVVSSVKGQREHFSEGRTD 121
            KE++ GV  + S+VK  ++H S+G+ D
Sbjct: 3569 KETIDGV--ISSNVKSTKQHISQGKND 3593


>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
            sapiens]
          Length = 5033

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 74   TGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLK 132
            T  + ++ +  EG  +    K+E  +  A+     + + E  +EG  + G   G+L++K
Sbjct: 1872 TEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930


>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
            sapiens]
          Length = 5038

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 74   TGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKGQREHFSEGRTDGGSHRGVLKLK 132
            T  + ++ +  EG  +    K+E  +  A+     + + E  +EG  + G   G+L++K
Sbjct: 1872 TEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930


>gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo
           sapiens]
          Length = 253

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 61  SGLKFTGLPAVPLTGNDLQKQQAFEGRRKQIINKKESVQGVAEVVSSVKG 110
           SG K   +  +PLT   L+      G  KQ+ N+  ++   AE ++ VKG
Sbjct: 177 SGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKG 226


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,647,191
Number of Sequences: 37866
Number of extensions: 265449
Number of successful extensions: 603
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 40
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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