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Search of human proteins with 239745435
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745435 PREDICTED: hypothetical protein XP_002343464 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745435 PREDICTED: hypothetical protein XP_002343464 [Homo ... 301 1e-82
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 168 1e-42
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 168 1e-42
gi|9910352 SH3-domain GRB2-like endophilin B2 [Homo sapiens] 31 0.43
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 30 0.56
gi|209969757 early growth response 2 protein isoform b [Homo sap... 28 2.8
gi|209969755 early growth response 2 protein isoform a [Homo sap... 28 2.8
gi|209969753 early growth response 2 protein isoform a [Homo sap... 28 2.8
gi|9845524 early growth response 2 protein isoform a [Homo sapiens] 28 2.8
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|30425446 hypothetical protein LOC255783 [Homo sapiens] 28 2.8
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 28 3.6
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 28 3.6
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 27 4.7
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 27 4.7
gi|19923084 polycystin-1L1 [Homo sapiens] 27 4.7
gi|239757641 PREDICTED: similar to hCG1646661 [Homo sapiens] 27 6.2
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 27 8.0
gi|7657520 ring finger protein 11 [Homo sapiens] 27 8.0
gi|197209974 coiled-coil and C2 domain containing 2A isoform a [... 27 8.0
gi|197209817 coiled-coil and C2 domain containing 2A isoform b [... 27 8.0
>gi|239745435 PREDICTED: hypothetical protein XP_002343464 [Homo
sapiens]
Length = 146
Score = 301 bits (771), Expect = 1e-82
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MNRMQGLRVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 60
MNRMQGLRVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF
Sbjct: 1 MNRMQGLRVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 60
Query: 61 PVPDPSVAQVLVEHNVTHTYAAPGADPQWPGAHCVLGVCVLQGTGRVRSEPQLLRVPGGP 120
PVPDPSVAQVLVEHNVTHTYAAPGADPQWPGAHCVLGVCVLQGTGRVRSEPQLLRVPGGP
Sbjct: 61 PVPDPSVAQVLVEHNVTHTYAAPGADPQWPGAHCVLGVCVLQGTGRVRSEPQLLRVPGGP 120
Query: 121 LPQLQQRLQARAVGCTYVQQQDAGAG 146
LPQLQQRLQARAVGCTYVQQQDAGAG
Sbjct: 121 LPQLQQRLQARAVGCTYVQQQDAGAG 146
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 168 bits (426), Expect = 1e-42
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 1 MNRMQGLRVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 60
MNRMQGL+VSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF
Sbjct: 1016 MNRMQGLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 1075
Query: 61 PVPDPSVAQVLVEHNVTHTYAAPG 84
PVPDPSVAQVLVEHNV HTYAAPG
Sbjct: 1076 PVPDPSVAQVLVEHNVMHTYAAPG 1099
Score = 30.8 bits (68), Expect = 0.43
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 18 PNATLALTAGVLV------------DSAVEVAFLWTFGDGEQALHQFQPPYNESFPVPDP 65
P+ + ++ GVLV S V + W FGDG L Q QP N ++
Sbjct: 1127 PSVAVGVSDGVLVAGRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTY--ASR 1184
Query: 66 SVAQVLVEHNVTHTYAAPGAD 86
V +E N T + AA AD
Sbjct: 1185 GTYHVRLEVNNTVSGAAAQAD 1205
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 168 bits (426), Expect = 1e-42
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 1 MNRMQGLRVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 60
MNRMQGL+VSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF
Sbjct: 1016 MNRMQGLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESF 1075
Query: 61 PVPDPSVAQVLVEHNVTHTYAAPG 84
PVPDPSVAQVLVEHNV HTYAAPG
Sbjct: 1076 PVPDPSVAQVLVEHNVMHTYAAPG 1099
Score = 30.8 bits (68), Expect = 0.43
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 18 PNATLALTAGVLV------------DSAVEVAFLWTFGDGEQALHQFQPPYNESFPVPDP 65
P+ + ++ GVLV S V + W FGDG L Q QP N ++
Sbjct: 1127 PSVAVGVSDGVLVAGRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTY--ASR 1184
Query: 66 SVAQVLVEHNVTHTYAAPGAD 86
V +E N T + AA AD
Sbjct: 1185 GTYHVRLEVNNTVSGAAAQAD 1205
>gi|9910352 SH3-domain GRB2-like endophilin B2 [Homo sapiens]
Length = 395
Score = 30.8 bits (68), Expect = 0.43
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 1 MNRMQGLRVSTVPAVLSP-NATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNES 59
+ R G V T P ++T TA + VA L G+ L + PP + +
Sbjct: 278 LGRFPGTFVGTTEPASPPLSSTSPTTAAATMPVVPSVASLAPPGEASLCLEEVAPPASGT 337
Query: 60 --------FPVPDPSVAQVLVEHNVTHTYAAPGADPQW 89
+ D S +L + +T Y+ PG DP W
Sbjct: 338 RKARVLYDYEAADSSELALLADELIT-VYSLPGMDPDW 374
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 30.4 bits (67), Expect = 0.56
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 97 GVCVLQGTG--RVRSEPQLLRVPGGPLPQLQQRLQARAVGCTYVQQQDAGAG 146
G CVL G R+ E LL++ G P PQ + VG YV DA +G
Sbjct: 441 GYCVLIGPAAERISEEVGLLQLLGDPPPQQVTQTDDPDVGLAYVFGPDANSG 492
>gi|209969757 early growth response 2 protein isoform b [Homo
sapiens]
Length = 426
Score = 28.1 bits (61), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 SFPVPDPS-VAQVLVEHNVTHTYAAP-GADPQWPGAHC-------VLGVCVLQG 103
S +P PS A V N T TY DPQ+PGA C ++ +LQG
Sbjct: 20 SLDLPYPSSFAPVSAPRNQTFTYMGKFSIDPQYPGASCYPEGIINIVSAGILQG 73
>gi|209969755 early growth response 2 protein isoform a [Homo
sapiens]
Length = 476
Score = 28.1 bits (61), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 SFPVPDPS-VAQVLVEHNVTHTYAAP-GADPQWPGAHC-------VLGVCVLQG 103
S +P PS A V N T TY DPQ+PGA C ++ +LQG
Sbjct: 70 SLDLPYPSSFAPVSAPRNQTFTYMGKFSIDPQYPGASCYPEGIINIVSAGILQG 123
>gi|209969753 early growth response 2 protein isoform a [Homo
sapiens]
Length = 476
Score = 28.1 bits (61), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 SFPVPDPS-VAQVLVEHNVTHTYAAP-GADPQWPGAHC-------VLGVCVLQG 103
S +P PS A V N T TY DPQ+PGA C ++ +LQG
Sbjct: 70 SLDLPYPSSFAPVSAPRNQTFTYMGKFSIDPQYPGASCYPEGIINIVSAGILQG 123
>gi|9845524 early growth response 2 protein isoform a [Homo sapiens]
Length = 476
Score = 28.1 bits (61), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 SFPVPDPS-VAQVLVEHNVTHTYAAP-GADPQWPGAHC-------VLGVCVLQG 103
S +P PS A V N T TY DPQ+PGA C ++ +LQG
Sbjct: 70 SLDLPYPSSFAPVSAPRNQTFTYMGKFSIDPQYPGASCYPEGIINIVSAGILQG 123
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.1 bits (61), Expect = 2.8
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 62 VPDP--SVAQVLVEH------NVTHTYAAP--------GADPQWPGAHCVLGVCVLQGTG 105
V DP VA VLV H ++ H +AAP A + G H VLGV L G
Sbjct: 108 VGDPLHEVAAVLVLHVEHLLVHLLHGHAAPEDGSHRQVAAVARVAGGHHVLGVEHLLGEL 167
Query: 106 RVRSEPQLLRVPGG 119
R P LL P G
Sbjct: 168 GHRERPVLLAAPAG 181
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.1 bits (61), Expect = 2.8
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 62 VPDP--SVAQVLVEH------NVTHTYAAP--------GADPQWPGAHCVLGVCVLQGTG 105
V DP VA VLV H ++ H +AAP A + G H VLGV L G
Sbjct: 108 VGDPLHEVAAVLVLHVEHLLVHLLHGHAAPEDGSHRQVAAVARVAGGHHVLGVEHLLGEL 167
Query: 106 RVRSEPQLLRVPGG 119
R P LL P G
Sbjct: 168 GHRERPVLLAAPAG 181
>gi|30425446 hypothetical protein LOC255783 [Homo sapiens]
Length = 142
Score = 28.1 bits (61), Expect = 2.8
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 77 THTYAAP-GADPQWPGAHCVL--GVCVLQGTGRVRSEPQLLRVPGGPLPQLQQRLQAR 131
T + AAP G P P C GV + S LL VPGGP PQLQ L R
Sbjct: 58 TRSPAAPAGPQPSAPSPPCAARPGVPPVPAPAAA-SLSCLLGVPGGPRPQLQLPLSRR 114
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 27.7 bits (60), Expect = 3.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 91 GAHCVLGVCVLQGTGRVRSEPQLLRVPGGPLPQLQQRLQARAVGCTYVQQ 140
G VLG +++ VR + +L+ P LP ++R V C Y+ +
Sbjct: 1320 GTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNR 1369
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 27.7 bits (60), Expect = 3.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 91 GAHCVLGVCVLQGTGRVRSEPQLLRVPGGPLPQLQQRLQARAVGCTYVQQ 140
G VLG +++ VR + +L+ P LP ++R V C Y+ +
Sbjct: 1341 GTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNR 1390
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 27.3 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 100 VLQGTGRVRSEPQLLRVPGGPLP 122
+L+G GR R+ R PG PLP
Sbjct: 90 ILEGCGRARAGVPQTRAPGSPLP 112
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 27.3 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 100 VLQGTGRVRSEPQLLRVPGGPLP 122
+L+G GR R+ R PG PLP
Sbjct: 90 ILEGCGRARAGVPQTRAPGSPLP 112
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 27.3 bits (59), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 11 TVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQAL 49
T P+ NA++A + + +VA+LW FGDG +L
Sbjct: 597 TSPSSALVNASVAFECWI--NFGTDVAYLWDFGDGTVSL 633
>gi|239757641 PREDICTED: similar to hCG1646661 [Homo sapiens]
Length = 190
Score = 26.9 bits (58), Expect = 6.2
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 7 LRVSTVPAVLSPN-ATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESFPVPDP 65
LR + + A + PN ++ AG L E LWT + + Q + P P
Sbjct: 87 LRSTFLLASMRPNTSSYCRFAGSLTPPDCEPTVLWTVFEDPIPIRWVQMTLFHTVPQAGP 146
Query: 66 SVAQVLVEHNVTHTYAAPGADPQWPGAHCVL 96
S H + T AAP + P G HC L
Sbjct: 147 SHF-----HPIPLT-AAPRSSPTLAGVHCAL 171
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 26.6 bits (57), Expect = 8.0
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 82 APGADPQWPGAHCVLGVC----VLQGTGRVRSEPQ-------LLRVPGGPLPQLQQRLQA 130
AP WP +L V +L G +EP+ LL++ G P PQ +
Sbjct: 2 APRCPWPWPRRRRLLDVLAPLVLLLGVRAASAEPERISEEVGLLQLLGDPPPQQVTQTDD 61
Query: 131 RAVGCTYVQQQDAGAG 146
VG YV DA +G
Sbjct: 62 PDVGLAYVFGPDANSG 77
>gi|7657520 ring finger protein 11 [Homo sapiens]
Length = 154
Score = 26.6 bits (57), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 41 TFGDGEQALHQFQPPYNESFPVP 63
+FG+G + + PPY E PVP
Sbjct: 25 SFGEGTEPDQEPPPPYQEQVPVP 47
>gi|197209974 coiled-coil and C2 domain containing 2A isoform a [Homo
sapiens]
Length = 1620
Score = 26.6 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 52 FQPPYNESFPVPDPSV---AQVLVEHNVTHTYAAPGADPQW 89
+ P +N +P+ V +V + V HT A G +P W
Sbjct: 1084 YSPTHNADYPLGQVLVRPFVEVSFQRTVCHTTTAEGPNPSW 1124
>gi|197209817 coiled-coil and C2 domain containing 2A isoform b [Homo
sapiens]
Length = 1512
Score = 26.6 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 52 FQPPYNESFPVPDPSV---AQVLVEHNVTHTYAAPGADPQW 89
+ P +N +P+ V +V + V HT A G +P W
Sbjct: 1035 YSPTHNADYPLGQVLVRPFVEVSFQRTVCHTTTAEGPNPSW 1075
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,682,588
Number of Sequences: 37866
Number of extensions: 355367
Number of successful extensions: 858
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 28
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.